Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Ingribelli, E., Modrackova, N., Tejnecky, V., Killer, J., Schwab, C. & Neuzil-Bunesova, V. (2023). Culture-dependent screening of endospore-forming clostridia in infant feces. BMC Microbiology, 23, Article 347. https://doi.org/10.1186/s12866-023-03104-4

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Effects of surfactant, oxidant, and flocculant treatments on methane emission from pig slurry during storage. Journal of Cleaner Production, 430, Article 139665. https://doi.org/10.1016/j.jclepro.2023.139665

Aagaard, J. B., Ballegaard, A-S. R., Andersen, P. O. & Spillner, E. (2023). Molekulares Design von Nanobodies als Werkzeuge in der Allergologie: Diagnostik und mehr. Allergo Journal, 32, 29-40. https://doi.org/10.1007/s15007-023-5829-1

Romani Fernandez, L. G., Aagaard, J. B., Spillner, E. & Jakob, T. (2023). Potential and limitations of epitope mapping and molecular targeting in Hymenoptera venom allergy. Frontiers in Allergy, 4. https://doi.org/10.3389/falgy.2023.1327391

Gkantzou, E., Weinhart, M. & Kara, S. (2023). 3D printing for flow biocatalysis. RSC Sustainability, 1(7), 1672-1685. https://doi.org/10.1039/d3su00155e

Palacios, P. A., Kleikamp, H., Nielsen, J. L., Jensen, M. B., Bentien, A. & Kofoed, M. V. W. (2023). Quinone-mediated extracellular electron transfer processes in ex situ biomethanation reactors. Bioresource Technology Reports, 24, Article 101671. https://doi.org/10.1016/j.biteb.2023.101671

Busk, M., Eggertsen, P. P., Overgaard, J., Horsman, M. R., Tørring, T., Jacobsen, K. M. & Poulsen, T. B. (2023). In Vitro Characterization of the Bacteria-derived Hypoxia-selective Cytotoxin BE-₄₃₅₄₇. Anticancer Research, 43(12), 5319-5329. https://doi.org/10.21873/anticanres.16735

Kuipers, S. B. & Kofoed, M. V. W. (2023). Biomethanation of syngas in packed bed reactors: A study of adaptation and microbial pathways in a thermophilic mixed consortium. Bioresource Technology Reports, 24, Article 101667. https://doi.org/10.1016/j.biteb.2023.101667

Xu, R., Gao, J., Cao, C., Shi, M., Zhang, Y., Hong, S., Guo, S., Chen, M., Song, P., Fu, G., Li, J., Liang, T., Miao, Y., Tang, L., Yang, J., Li, N. & Dong, M. (2023). HDL mimetics protect Alzheimer's patients carrying APOE ε4 from SARS-CoV-2 invasion. Nano Today, 53, Article 102051. https://doi.org/10.1016/j.nantod.2023.102051

Dai, R., Dai, C., Hou, S., He, Q., Liu, B., Huang, M., Jiang, H., Li, M. H., Pan, L., Guo, Z., Kim, J., Han, M., Yamauchi, Y. & Xu, X. (2023). Opportunities and challenges of hydrotalcite-related electrocatalysts for seawater splitting: a systematic perspective from materials synthesis, characterization and application. Journal of Materials Chemistry A, 11(38), 20383-20407. https://doi.org/10.1039/d3ta02524a

Zoppi, G., Andrade, T. A., Ward, A. J., Ambye-Jensen, M. & Biller, P. (2023). Biorefinery integration of a green protein platform for maximum resource utilization. Cleaner and Circular Bioeconomy, 6, Article 100064. https://doi.org/10.1016/j.clcb.2023.100064

Choi, J., Kim, Y., Eser, B. E. & Han, J. (2023). Theoretical study on the glycosidic C-C bond cleavage of 3''-oxo-puerarin. Scientific Reports, 13(1), Article 16282. https://doi.org/10.1038/s41598-023-43379-1

Shen, W., A. Dalby, P., Guo, Z., Li, W., Zhu, C. & Fan, D. (2023). Residue Effect-Guided Design: Engineering of S. Solfataricus β-Glycosidase to Enhance Its Thermostability and Bioproduction of Ginsenoside Compound K. Journal of Agricultural and Food Chemistry, 71(44), 16669–16680. https://doi.org/10.1021/acs.jafc.3c04575

Baumdick, M. E., Niehrs, A., Degenhardt, F., Schwerk, M., Hinrichs, O., Jordan-Paiz, A., Padoan, B., Wegner, L. H. M., Schloer, S., Zecher, B. F., Malsy, J., Joshi, V. R., Illig, C., Schröder-Schwarz, J., Möller, K. J., Akar, A., Flemming, C., Felix, Flomm ... International Inflammatory Bowel Disease Genetics Consortium (2023). HLA-DP on Epithelial Cells Enables Tissue Damage by NKp44⁺ Natural Killer Cells in Ulcerative Colitis. Gastroenterology, 165(4), 946-962.e13. https://doi.org/10.1053/j.gastro.2023.06.034

Ramirez Garcia, A., Greppi, A., Constancias, F., Ruscheweyh, H-J., Gasser, J., Hurley, K., Sturla, S. J., Schwab, C. & Lacroix, C. (2023). Anaerobutyricum hallii promotes the functional depletion of a food carcinogen in diverse healthy fecal microbiota. Frontiers Microbiomes, 2, Article 1194516. https://doi.org/10.3389/frmbi.2023.1194516

Høgsgaard, K., Vidal, N. P., Marietou, A., Fiehn, O. G., Li, Q., Bechtner, J., Catalano, J., Martinez, M. M. & Schwab, C. (2023). Fucose modifies short chain fatty acid and H2S formation through alterations of microbial cross-feeding activities. FEMS Microbiology Ecology, 99(10), Article fiad107. https://doi.org/10.1093/femsec/fiad107

Domínguez de María, P., Kara, S. & Gallou, F. (2023). Biocatalysis in Water or in Non-Conventional Media? Adding the CO2 Production for the Debate. Molecules, 28(18), Article 6452. https://doi.org/10.3390/molecules28186452

Huertas-Díaz, L., Kyhnau, R., Ingribelli, E., Neuzil-Bunesova, V., Li, Q., Sasaki, M., Lauener, R. P., Roduit, C., Frei, R., CK-CARE study group, Sundekilde, U. & Schwab, C. (2023). Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces. Gut Microbes, 15(1), Article 2241209. https://doi.org/10.1080/19490976.2023.2241209

Pourjafar, M., Saidijam, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2023). Surfaceome Profiling Suggests Potential of Anti-MUC1×EGFR Bispecific Antibody for Breast Cancer Targeted Therapy. Journal of Immunotherapy, 46(7), 245-261. https://doi.org/10.1097/CJI.0000000000000482

Gylling, M., Nord-Larsen, T., Bruhn, A., Thomsen, M., Ambye-Jensen, M., Mortensen, E. Ø. & Jørgensen, U. (2023). Potential Danish biomass production and utilization in 2030. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA Report No. 219 https://dcapub.au.dk/djfpublikation/djfpdf/DCArapport219.pdf

Vaupel, S., Mau, R., Kara, S., Seitz, H., Kragl, U. & Meyer, J. (2023). 3D printed and stimulus responsive drug delivery systems based on synthetic polyelectrolyte hydrogels manufactured via digital light processing. Journal of Materials Chemistry B, 28(11), 6547-6559. https://doi.org/10.1039/D3TB00285C

Röllig, R., Paul, C. E., Rousselot-Pailley, P., Kara, S. & Alphand, V. (2023). Hybrid catalysis for enantioselective Baeyer-Villiger oxidation and stereoselective epoxidation: A Cp*Ir complex to fuel FMN and FAD reduction for flavoprotein monooxygenase modules. Reaction Chemistry & Engineering , 8(12), 3117-3123. https://doi.org/10.1039/d3re00411b

Jopp, S., Fleischhammer, T., Lavrentieva, A., Kara, S. & Meyer, J. (2023). Synthesis, biocompatibility, and antimicrobial properties of glucose-based ionic liquids. RSC Sustainability, 1(7), 1751-1764. https://doi.org/10.1039/d3su00191a

Jensen, B. N., Wang, Y., Friec, A. L., Nabavi, S. . M. . S., Dong, MD., Seliktar, D. & Chen, M. (2023). Wireless electromagnetic neural stimulation patch with anisotropic guidance. npj Flexible Electronics, 7(1), Article 34. https://doi.org/10.1038/s41528-023-00270-3

Nasrollahzadeh, F., Spotti, M. J., Skov, K., Mekonen, T., Chen, M. & Martinez, M. M. (2023). Dispersion of low concentration of particulate or fibrillated protein fillers into plant protein melts and their impact on the elasticity and tenderness gap of plant-based foods. Food Hydrocolloids, 144, Article 108985. https://doi.org/10.1016/j.foodhyd.2023.108985

Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W., Andersen, G. R. & Guo, Z. (2023). Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation. Journal of Hazardous Materials, 458, Article 131986. https://doi.org/10.1016/j.jhazmat.2023.131986

Sieborg, M. U., Ottosen, L. D. M. & Kofoed, M. V. W. (2023). Enhanced process control of trickle-bed reactors for biomethanation by vertical profiling directed by hydrogen microsensor monitoring. Bioresource Technology, 384, Article 129242. https://doi.org/10.1016/j.biortech.2023.129242

Ye, S., Cheng, Y., Guo, Z., Wang, X. & Wei , W. (2023). A Lipid Toolbox of Sugar Alcohol Fatty Acid Monoesters for Single-component Lipid Nanoparticles with Temperature-controlled Release. Colloids and Surfaces B: Biointerfaces, 228, Article 113426. https://doi.org/10.1016/j.colsurfb.2023.113426

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Bogojevic, O., Zhang, Y., Daugaard Wolff, C., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2023). A sustainable and regioselective synthesis of Hemi-bis(monoacylglycero)phosphates and bis(diacylglycero)phosphates. iScience, 26(7), Article 107075. https://doi.org/10.1016/j.isci.2023.107075

Ambye-Jensen, M., (2022). Arealanvendelse og bioøkonomi. Synergier og systemgevinster ved ændret arealanvendelse og bioraffinering, No. 2022-0340167 / 2020-0114173, 34 p., Feb 11, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Gaffey, J., Rajauria, G., McMahon, H., Ravindran, R., Dominguez, C., Ambye-Jensen, M., Souza, M. F., Meers, E., Aragonés, M. M., Skunca, D. & Sanders, J. P. M. (2023). Green Biorefinery systems for the production of climate-smart sustainable products from grasses, legumes and green crop residues. Biotechnology Advances, 66, Article 108168. https://doi.org/10.1016/j.biotechadv.2023.108168

Aagaard, J. B., Ballegaard, A-S. R., Andersen, P. O. & Spillner, E. (2023). Molecular engineering of nanobodies as tools in allergology: diagnostics and beyond. Allergo Journal International, 32(7), 240-250. https://doi.org/10.1007/s40629-023-00261-w

Munoz Duarte, L. D. & Philips, J. (2023). No acetogen is equal: Strongly different H₂ thresholds reflect diverse bioenergetics in acetogenic bacteria. Environmental Microbiology, 25(10), 2032-2040. https://doi.org/10.1111/1462-2920.16429

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Additives and methods for the mitigation of methane emission from stored liquid manure. Biosystems Engineering, 229, 209-245. https://doi.org/10.1016/j.biosystemseng.2023.03.015

Klein, V. J., Brito, L. F., Perez-Garcia, F., Brautaset, T. & Irla, M. (2023). Metabolic engineering of thermophilic Bacillus methanolicus for riboflavin overproduction from methanol. Microbial Biotechnology, 16(5), 1011-1026. https://doi.org/10.1111/1751-7915.14239

Alphand, V., van Berkel, W. J. H., Jurkas, V., Kara, S., Kourist, R., Kroutil, W., Mascia, F., M. Nowaczyk, M., Paul, C. E., Schmidt, S., Spasic, J., Tamagnini, P. & Winkler, C. K. (2023). Exciting Enzymes: Current State and Future Perspective of Photobiocatalysis. ChemPhotoChem, 7(7), Article e202200325. https://doi.org/10.1002/cptc.202200325

Gao, P., Zhang, X., Huang, X., Chen, Z., Marietou, A., Holmkvist, L., Qu, L., Finster, K. & Gong, X. (2023). Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. BMC Genomics, 24(1), Article 209. https://doi.org/10.1186/s12864-023-09297-2

Semproli, R., Chanquia, S. N., Bittner, J. P., Müller, S., Domínguez de María, P., Kara, S. & Ubiali, D. (2023). Deep Eutectic Solvents for the Enzymatic Synthesis of Sugar Esters: A Generalizable Strategy? ACS Sustainable Chemistry & Engineering, 11(15), 5926-5936. https://doi.org/10.1021/acssuschemeng.2c07607

Meyer, L-E., Horvath, D., Vaupel, S., Meyer, J., Alcalde, M. & Kara, S. (2023). A 3D printable synthetic hydrogel as an immobilization matrix for continuous synthesis with fungal peroxygenases. Reaction Chemistry & Engineering , 8(5), 984-988. https://doi.org/10.1039/d3re00058c

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. Aarhus Universitet.

Friis, S. J., Hansen, T. S., Poulsen, M., Gregersen, H., Brüel, A. & Vinge Nygaard, J. (2023). Biomechanical properties of the stomach: A comprehensive comparative analysis of human and porcine gastric tissue. Journal of the Mechanical Behavior of Biomedical Materials, 138, Article 105614. https://doi.org/10.1016/j.jmbbm.2022.105614

Li, Z., Zhang, G., Charalampopoulos, D. & Guo, Z. (2023). Ionic liquid-mediated regeneration of cellulose dramatically improves decrystallization, TEMPO-mediated oxidation and alkyl/alkenyl succinylation. International Journal of Biological Macromolecules, 236, Article 123983. https://doi.org/10.1016/j.ijbiomac.2023.123983

Xiong, X., Shang, Y., Bai, L., Luo, S., Seviour, T. W., Guo, Z., Ottosen, L. D. M. & Wei, Z. (2023). Complete Defluorination of Perfluorooctanoic Acid (PFOA) by Ultrasonic Pyrolysis Towards Zero Fluoro-Pollution. Water Research, 235, Article 119829. https://doi.org/10.1016/j.watres.2023.119829

Vernet, G., Ma, Y., Zhang, N. & Kara, S. (2023). Cross-linked enzyme aggregates of fusion enzymes in microaqueous organic media. ChemBioChem, 24(8), Article e202200794. https://doi.org/10.1002/cbic.202200794

Xie, Z., Dionysiou, D. D., Luo, S., Chen, M. & Wei, Z. (2023). Dual-reaction center catalyst based on common metals Cu-Mg-Al for synergistic peroxymonosulfate adsorption-activation in Fenton-like process. Applied Catalysis B: Environmental, 327, Article 122468. https://doi.org/10.1016/j.apcatb.2023.122468

Ye, Z., Tan, C., Huang, X., Ouyang, Y., Yang, L., Wang, Z. & Dong, M. (2023). Emerging MoS₂ Wafer-Scale Technique for Integrated Circuits. Nano-Micro Letters, 15(1), Article 38. https://doi.org/10.1007/s40820-022-01010-4

Santos Oliveira, J. M., Poulsen, J. S., Foresti, E. & Nielsen, J. L. (2023). Microbial communities and metabolic pathways involved in reductive decolorization of an azo dye in a two-stage AD system. Chemosphere, 310, Article 136731. https://doi.org/10.1016/j.chemosphere.2022.136731

T. M. Henehan, G., Ryan, B. J., Eser, B. E., Li, N., Guo, Z. & Kinsella, G. K. (2023). Editorial: Green chemistry biocatalysis. Frontiers in Bioengineering and Biotechnology, 11, Article 1158275. https://doi.org/10.3389/fbioe.2023.1158275

Müller, C. A., Li, P., Wang, Y., Dong, MD., Tian, B. & Chen, M. (2023). Bionic Opto-responsive Fiber for Directing Neurite Growth. Materials Today Nano, 22, Article 100311. https://doi.org/10.1016/j.mtnano.2023.100311

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Revised 21.03.2023

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