Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Stødkilde, L., Jensen, M. S., Jørgensen, E. T., Ambye-Jensen, M. & Eskildsen, M. (2025). Grass-based feeding strategies for organic growing-finishing pigs during temperate summer conditions. Livestock Science, 298, Article 105748. https://doi.org/10.1016/j.livsci.2025.105748

Plesner, T. J., Wang, F., Ouyang, Y., Khazaee, Z., Zhou, P., Zhang, M., Eser, B. E., Zhang, Y. & Guo, Z. (2025). Cooperative action from Cu-centered MOF and a laccase for enhanced decolorization of synthetic dyes. Biochemical Engineering Journal, 221, Article 109807. https://doi.org/10.1016/j.bej.2025.109807

Mathiasen, S. S., Guo, Z., Fritzen, A. M., Kiens, B., Kleinert, M. & Wiking, L. (2025). Physical properties and stability of milk fat retentate fraction from short-path distillation. International Dairy Journal, 169, Article 106310. https://doi.org/10.1016/j.idairyj.2025.106310

Sieborg, M. U. (2023). Giving CO2 a second chance: Optimization and integration of the biomethanation technology platform. Aarhus University - Department of Biological and Chemical Engineering.

Tørring, T. (2011). Controlling Function and Structure with DNA.

Bai, L. (2024). ENHANCING PHOTOREACTIVITY FOR THE DESTRUCTION OF PER- AND POLYFLUOROALKYL SUBSTANCES (PFAS) IN WATER.

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. Århus Universitet.

Paz, L.-C. (2016). Beneficial Bacterial Symbionts of Earthworms: Insights into Symbiont Transmission and Metabolic Impact on their Host.

Ambye-Jensen, M. (2014). Ensiling as pretreatment of grass for lignocellulosic biomass conversion.

Kofoed, M. (2010). Diversity and Regulation of Nitrate-Reducing and Denitrifying Bacteria in Aquatic Systems. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Sørensen, M. F., Andrade, T. A., dos Passos, N. H. M. & Ambye-Jensen, M. (2025). Influence of substrate concentration on single-cell protein production from green biorefinery residual juice. Bioresource Technology Reports, 30, Article 102151. https://doi.org/10.1016/j.biteb.2025.102151

Junker, A. L., Juve, J. M. A., Bai, L., Qvist Christensen, C. S., Ahrens, L., Cousins, I. T., Ateia, M. & Wei, Z. (2025). Best Practices for Experimental Design, Testing, and Reporting of Aqueous PFAS-Degrading Technologies. Environmental Science and Technology, 59(18), 8939-8950. https://doi.org/10.1021/acs.est.4c08571

Wijesooriya, M. M., Vithanage, M. & Wijesekara, H. (2025). Underestimated Threats: Personal Care Products (PCPs) in Marine and Coastal Environments. In M. Vithanage, S. M. Samarasekara, B. D. James & C. M. Reddy (Eds.), Coastal and Marine Pollution: Source to Sink, Mitigation and Management (pp. 225-248). Wiley. https://doi.org/10.1002/9781394237029.ch12

Sieborg, M. U. & Kofoed, M. V. W. (2025). Gamle processer, nye muligheder: Nyt kemisk-biologisk koncept til CO2-fangst og omdannelse. Dansk Kemi, 106(2), 12-14. Article 106. https://ipaper.ipapercms.dk/TechMedia/DanskKemi/2025/2/?page=12

Ouyang, Y., Zhang, C., Wang, J., Guo, Z., Wang, Z. & Dong, M. (2025). Gate-Tunable Dual-Mode Optoelectronic Device for Self-Powered Photodetector and Optoelectronic Synapse. Advanced Science, 12(17), Article 2416259. https://doi.org/10.1002/advs.202416259

Tvilum, M., Lutz, C. M., Knap, M. M., Hoffmann, L., Khalil, A. A., Holt, M. I., Kandi, M., Schmidt, H. H., Appelt, A. L., Alber, M. & Møller, D. S. (2023). Different benefits of adaptive radiotherapy for different histologies of NSCLC. Acta Oncologica, 62(11), 1426-1432. https://doi.org/10.1080/0284186X.2023.2260944

Lærke, H. N., Jensen, S. K., Andrade, T. A., Ambye-Jensen, M., Jørgensen, E. T. & Stødkilde, L. (2025). Towards efficient grass-clover biorefining: Influence of harvesting methods and delayed processing. Animal Feed Science and Technology, 324, Article 116336. https://doi.org/10.1016/j.anifeedsci.2025.116336

Huertas-Díaz, L., Vestergaard, L. G., Marietou, A., Irla, M., Behr, J., Somoza, M. M., Feilberg, A. & Schwab, C. (2025). Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens. Gut Pathogens, 17(1), Article 23. https://doi.org/10.1186/s13099-025-00689-1

Ma, Y., Bittner, J. P., Vernet, G., Zhang, N. & Kara, S. (2025). Linkers in Action: Exploring Fusion Enzymes for Oxyfunctionlizations in Non-Conventional Media Through Experiments and Simulations. ChemCatChem, 17(9), Article e202401893. https://doi.org/10.1002/cctc.202401893

Milić, M., Vernet, G., Le, H. Y., Zhang, N., Byström, E., Domínguez de María, P. & Kara, S. (2025). Assessing the Industrial Edge of the Lipase-Mediated Oxidation of 2,5-Diformylfuran to 2,5-Furandicarboxylic Acid: Rotating Bed Reactors, an “Acyl-Donor-Free” Oxidation Concept, and Environmental Aspects. Organic Process Research and Development, 29(4), 1058-1066. https://doi.org/10.1021/acs.oprd.4c00474

Zhang, N., Lahmann, V., Bittner, J. P., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2025). Redox Biocatalysis in Lidocaine-Based Hydrophobic Deep Eutectic Solvents: Non-Conventional Media Outperform Aqueous Conditions. ChemSusChem, 18(6), Article e202402075. https://doi.org/10.1002/cssc.202402075

Xie, J., Veigel, M., Schmidt, H. & Gänzle, M. (2025). Selection of Bacillus spp. as fermentation cultures for production of plant-based cheese analogues. International Journal of Food Microbiology, 435, Article 111178. https://doi.org/10.1016/j.ijfoodmicro.2025.111178

Lülf, R. H., Vogel, R. F. & Ehrmann, M. A. (2021). Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations. International Journal of Food Microbiology, 354, Article 109316. https://doi.org/10.1016/j.ijfoodmicro.2021.109316

Link, T., Lülf, R. H., Parr, M., Hilgarth, M. & Ehrmann, M. A. (2022). Genome Sequence of the Diploid Yeast Debaryomyces hansenii TMW 3.1188. Microbiology Resource Announcements, 11(11). https://doi.org/10.1128/mra.00649-22

Lülf, R. H., Hilgarth, M. & Ehrmann, M. A. (2022). Chromohalobacter moromii sp. nov., a moderately halophilic bacterium isolated from lupine-based moromi fermentation. Systematic and Applied Microbiology, 45(4), Article 126324. https://doi.org/10.1016/j.syapm.2022.126324

Lülf, R. H., Selg-Mann, K., Hoffmann, T., Zheng, T., Schirmer, M. & Ehrmann, M. A. (2023). Carbohydrate Sources Influence the Microbiota and Flavour Profile of a Lupine-Based Moromi Fermentation. Foods, 12(1), Article 197. https://doi.org/10.3390/foods12010197

Xiong, X., Luo, Z., Luo, S., Bai, L., Shang, Y., Junker, A. L. & Wei, Z. (2025). Sustained hydrated electron production for enhanced reductive defluorination of PFAS in groundwater. Water Research, 279, Article 123401. https://doi.org/10.1016/j.watres.2025.123401

Ma, Y., Vernet, G., Zhang, N. & Kara, S. (2025). Exploring DES-Water Mixtures for Improved ADH-CHMO Fusion Enzyme Performance in Linear Cascades. ChemCatChem, 17(5), Article e202401792. https://doi.org/10.1002/cctc.202401792

Gonzalez-Serrano, D. J., Benmebarek, I. E., Hadidi, M., Bechtner, J. D., Martinez, M. M., Cabañas, B. & Moreno, A. (2025). Optimization of microwave-assisted hydrothermal extraction of homogalacturonan-rich, low methoxyl pectin from discarded garlic peels: Comparative macromolecular and functional analysis with conventional extraction. Food Hydrocolloids, 166, Article 111324. https://doi.org/10.1016/j.foodhyd.2025.111324

Temovska, M., Hegner, R., Ortiz-Ardila, A. E., Usack, J. G. & Angenent, L. T. (2025). Lactate production from lactose-rich wastewater: A comparative study on reactor configurations to maximize conversion rates and efficiencies. Water Research, 278, Article 123365. https://doi.org/10.1016/j.watres.2025.123365

Lara, A. R. & Gosset, G. (2019). Preface. In Minimal Cells: Design, Construction, Biotechnological Applications (pp. v-vi). Springer International Publishing.

Pablos, T. E., Sigala, J. C., Le Borgne, S. & Lara, A. R. (2014). Aerobic expression of Vitreoscilla hemoglobin efficiently reduces overflow metabolism in Escherichia coli. Biotechnology Journal, 9(6), 791-799. https://doi.org/10.1002/biot.201300388

de la Cruz, M., Ramírez, E. A., Sigala, J. C., Utrilla, J. & Lara, A. R. (2020). Plasmid DNA production in proteome-reduced Escherichia coli. Microorganisms, 8(9), 1-8. Article 1444. https://doi.org/10.3390/microorganisms8091444

Chávez-Béjar, M. I., Lara, A. R., López, H., Hernández-Chávez, G., Martinez, A., Ramírez, O. T., Bolívar, F. & Gosset, G. (2008). Metabolic engineering of Escherichia coli for L-tyrosine production by expression of genes coding for the chorismate mutase domain of the native chorismate mutase-prephenate dehydratase and a cyclohexadienyl dehydrogenase from Zymomonas mobilis. Applied and Environmental Microbiology, 74(10), 3284-3290. https://doi.org/10.1128/AEM.02456-07

Lara, A. R. & Gosset, G. (2019). Minimal cells: Design, construction, biotechnological applications. Springer International Publishing. https://doi.org/10.1007/978-3-030-31897-0

Borja, G. M., Meza Mora, E., Barrón, B., Gosset, G., Ramírez, O. T. & Lara, A. R. (2012). Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode. Microbial Cell Factories, 11, Article 132. https://doi.org/10.1186/1475-2859-11-132

Taymaz-Nikerel, H. & Lara, A. R. (2016). Editorial: Quantitative systems biology for engineering organisms and pathways. Frontiers in Bioengineering and Biotechnology, 4(MAR), Article 22. https://doi.org/10.3389/fbioe.2016.00022

Jaén, K. E., Velazquez, D., Sigala, J. C. & Lara, A. R. (2021). Enhancing microaerobic plasmid DNA production by chromosomal expression of Vitreoscilla hemoglobin in E. coli. Biochemical Engineering Journal, 166, Article 107862. https://doi.org/10.1016/j.bej.2020.107862

Lara, A. R., Caspeta, L., Gosset, G., Bolívar, F. & Ramírez, O. T. (2008). Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: An alternative to fed-batch cultures. Biotechnology and Bioengineering, 99(4), 893-901. https://doi.org/10.1002/bit.21664

Fuentes, L. G., Lara, A. R., Martínez, L. M., Ramírez, O. T., Martínez, A., Bolívar, F. & Gosset, G. (2013). Modification of glucose import capacity in Escherichia coli: Physiologic consequences and utility for improving DNA vaccine production. Microbial Cell Factories, 12(1), Article 42. https://doi.org/10.1186/1475-2859-12-42

Jaén, K. E., Lara, A. R. & Ramírez, O. T. (2013). Effect of heating rate on pDNA production by E. coli. Biochemical Engineering Journal, 79, 230-238. https://doi.org/10.1016/j.bej.2013.08.006

Jaén, K. E., Velazquez, D., Delvigne, F., Sigala, J. C. & Lara, A. R. (2019). Engineering E. coli for improved microaerobic pDNA production. Bioprocess and Biosystems Engineering, 42(9), 1457-1466. https://doi.org/10.1007/s00449-019-02142-5

Caspeta, L., Lara, A. R., Pérez, N. O., Flores, N., Bolívar, F. & Ramírez, O. T. (2013). Enhancing thermo-induced recombinant protein production in Escherichia coli by temperature oscillations and post-induction nutrient feeding strategies. Journal of Biotechnology, 167(1), 47-55. https://doi.org/10.1016/j.jbiotec.2013.06.001

Pablos, T. E., Soto, R., Mora, E. M., Le Borgne, S., Ramírez, O. T., Gosset, G. & Lara, A. R. (2012). Enhanced production of plasmid DNA by engineered Escherichia coli strains. Journal of Biotechnology, 158(4), 211-214. https://doi.org/10.1016/j.jbiotec.2011.04.015

Lara, A. R., Jaén, K. E., Sigala, J. C., Regestein, L. & Büchs, J. (2017). Evaluation of microbial globin promoters for oxygen-limited processes using Escherichia coli. Journal of Biological Engineering, 11(1), Article 39. https://doi.org/10.1186/s13036-017-0082-3

Lara, A. R., Knabben, I., Regestein, L., Sassi, J., Caspeta, L., Ramírez, O. T. & Büchs, J. (2011). Comparison of oxygen enriched air vs. pressure cultivations to increase oxygen transfer and to scale-up plasmid DNA production fermentations. Engineering in Life Sciences, 11(4), 382-386. https://doi.org/10.1002/elsc.201000104

Lara, A. R., Leal, L., Flores, N., Gosset, G., Bolívar, F. & Ramírez, O. T. (2006). Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system. Biotechnology and Bioengineering, 93(2), 372-385. https://doi.org/10.1002/bit.20704

Knabben, I., Regestein, L., Marquering, F., Steinbusch, S., Lara, A. R. & Büchs, J. (2010). High cell-density processes in batch mode of a genetically engineered Escherichia coli strain with minimized overflow metabolism using a pressurized bioreactor. Journal of Biotechnology, 150(1), 73-79. https://doi.org/10.1016/j.jbiotec.2010.07.006

Galindo, J., Barrón, B. L. & Lara, A. R. (2016). Improved production of large plasmid DNA by enzyme-controlled glucose release. Annals of Microbiology, 66(3), 1337-1342. https://doi.org/10.1007/s13213-016-1218-2

Lara, A. R., Palomares, L. A. & Ramírez, O. T. (2016). Scale-down: Simulating large-scale cultures in the laboratory. In Industrial Biotechnology: Products and Processes (pp. 55-79). Wiley-VCH Verlag GmbH. https://doi.org/10.1002/9783527807833

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