Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Klein, V. J., Brito, L. F., Perez-Garcia, F., Brautaset, T. & Irla, M. (2023). Metabolic engineering of thermophilic Bacillus methanolicus for riboflavin overproduction from methanol. Microbial Biotechnology, 16(5), 1011-1026. https://doi.org/10.1111/1751-7915.14239

Gao, P., Zhang, X., Huang, X., Chen, Z., Marietou, A., Holmkvist, L., Qu, L., Finster, K. & Gong, X. (2023). Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. BMC Genomics, 24(1), [209]. https://doi.org/10.1186/s12864-023-09297-2

Wang, X., Lv, G., Zhang, Y., Yu, Y., Wang, X., Peixoto, L., Qian, C. & Pang, H. (2023). Annual burying of straw after pelletizing: A novel and feasible way to improve soil fertility and productivity in Northeast China. Soil and Tillage Research, 230, [105699]. https://doi.org/10.1016/j.still.2023.105699

Semproli, R., Chanquia, S. N., Bittner, J. P., Müller, S., Domínguez de María, P., Kara, S. & Ubiali, D. (2023). Deep Eutectic Solvents for the Enzymatic Synthesis of Sugar Esters: A Generalizable Strategy? ACS Sustainable Chemistry & Engineering, 11(15), 5926-5936. https://doi.org/10.1021/acssuschemeng.2c07607

Xiong, X., Shang, Y., Bai, L., Luo, S., Seviour, T. W., Guo, Z., Ottosen, L. D. M. & Wei, Z. (2023). Complete Defluorination of Perfluorooctanoic Acid (PFOA) by Ultrasonic Pyrolysis Towards Zero Fluoro-Pollution. Water Research, 235, [119829]. https://doi.org/10.1016/j.watres.2023.119829

Vernet, G., Ma, Y., Zhang, N. & Kara, S. (2023). Cross-linked enzyme aggregates of fusion enzymes in microaqueous organic media. ChemBioChem, 24(8), [e202200794]. https://doi.org/10.1002/cbic.202200794

Vilela, N., Tomazetto, G., Gonçalves, T. A., Sodré, V., Persinoti, G. F., Moraes, E. C., de Oliveira, A. H. C., da Silva, S. N., Fill, T. P., Damasio, A. & Squina, F. M. (2023). Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production. Biotechnology for Biofuels and Bioproducts, 16(1), [5]. https://doi.org/10.1186/s13068-022-02251-6

Ye, Z., Tan, C., Huang, X., Ouyang, Y., Yang, L., Wang, Z. & Dong, M. (2023). Emerging MoS₂ Wafer-Scale Technique for Integrated Circuits. Nano-Micro Letters, 15(1), [38]. https://doi.org/10.1007/s40820-022-01010-4

Santos Oliveira, J. M., Poulsen, J. S., Foresti, E. & Nielsen, J. L. (2022). Microbial communities and metabolic pathways involved in reductive decolorization of an azo dye in a two-stage AD system. Chemosphere, 310, [136731]. https://doi.org/10.1016/j.chemosphere.2022.136731

T. M. Henehan, G., Ryan, B. J., Eser, B. E., Li, N., Guo, Z. & Kinsella, G. K. (2023). Editorial: Green chemistry biocatalysis. Frontiers in Bioengineering and Biotechnology, 11. https://doi.org/10.3389/fbioe.2023.1158275

Petermeier, P., Kohlfuerst, C., Torvisco, A., Fischer, R., Mata, A., Dalllinger, D., Kappe, C. O., Schrittwieser, J. & Kroutil, W. (2023). Asymmetric Synthesis of Trisubstituted Piperidines via Biocatalytic Transamination and Diastereoselective Enamine or Imine Reduction. Advanced Synthesis & Catalysis. https://doi.org/10.1002/adsc.202300050

Li, L., Li, Z., Balle, T., Liu, G. & Guo, Z. (2023). Biosynthesis of pectic oligosaccharide-based amphiphiles as novel stabilizers of nanoemulsions by coupling enzymatic depolymerization with alkyl/alkenyl succinylation. Food Hydrocolloids, 139, [108574]. https://doi.org/10.1016/j.foodhyd.2023.108574

Hansen, N. P., Jensen, S. K., Johansen, M., Hellwing, A. L. F., Ambye-Jensen, M., Larsen, M. & Weisbjerg, M. R. (2023). Fiber digestibility and protein value of pulp silage for lactating dairy cows: Effects of wet fractionation by screw pressing of perennial ryegrass. Journal of Dairy Science, 106(2), 937-953. https://doi.org/10.3168/jds.2022-21851

Zhang, N., Bittner, J. P., Fiedler, M., Beretta, T., De María, P. D., Jakobtorweihen, S. & Kara, S. (2022). Unraveling Alcohol Dehydrogenase Catalysis in Organic-Aqueous Biphasic Systems Combining Experiments and Molecular Dynamics Simulations. ACS Catalysis, 12(15), 9171-9180. https://doi.org/10.1021/acscatal.2c02881

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2022). Coupling the benefits of grassland crops and green biorefining to produce protein, materials and services for the green transition. Grass and Forage Science, 77(4), 295-306. https://doi.org/10.1111/gfs.12594

Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023). Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion. Biochemical Engineering Journal, 191, [ 108795]. https://doi.org/10.1016/j.bej.2022.108795

Ramirez Garcia, A., Hurley, K., Marastoni, G., Diard, M., Hofer, S., Greppi, A., Hardt, W-D., Lacroix, C., Sturla, S. J. & Schwab, C. (2022). Pathogenic and Commensal Gut Bacteria Harboring Glycerol/Diol Dehydratase Metabolize Glycerol and Produce DNA-Reactive Acrolein. Chemical Research in Toxicology, 35(10), 1840-1850. https://doi.org/10.1021/acs.chemrestox.2c00137

Rocha Martin, V. N., Del’Homme, C., Chassard, C., Schwab, C., Braegger, C., Bernalier-Donadille, A. & Lacroix, C. (2022). A proof of concept infant-microbiota associated rat model for studying the role of gut microbiota and alleviation potential of Cutibacterium avidum in infant colic. Frontiers in nutrition, 9, [902159]. https://doi.org/10.3389/fnut.2022.902159

Zhang, J. & Schwab, C. (2022). Is acrolein a reuterin-borne chemical hazard in biopreserved foods? Food Chemistry Advances, 1, [100044]. https://doi.org/10.1016/j.focha.2022.100044

Schwab, C. (2022). The development of human gut microbiota fermentation capacity during the first year of life. Microbial Biotechnology, 15(12), 2865-2874. https://doi.org/10.1111/1751-7915.14165

Sasaki, M., Schwab, C., Ramirez Garcia, A., Li, Q., Ferstl, R., Bersuch, E., Akdis, C. A., Lauener, R., Frei, R., Roduit, C. & CK-CARE study group (2022). The abundance of Ruminococcus bromii is associated with faecal butyrate levels and atopic dermatitis in infancy. Allergy: European Journal of Allergy and Clinical Immunology, 77(12), 3629-3640. https://doi.org/10.1111/all.15440

Pérez-García, F., Brito, L. F., Irla, M., Jorge, J. M. P. & Sgobba, E. (2022). Editorial: Promising and sustainable microbial feedstocks for biotechnological processes. Frontiers in Microbiology, 13, [973723]. https://doi.org/10.3389/fmicb.2022.973723

Ambye-Jensen, M., (2022). Støtte til kvalificering af bioraffineringsprojekter – Del 2, No. 2022-0356347, 6 p., Nov 24, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Abd El-Maksoud, A. A., Cheng, W., Petersen, S. V., Pandiselvam, R. & Guo, Z. (2022). Covalent phenolic acid-grafted β-lactoglobulin conjugates: Synthesis, characterization, and evaluation of their multifunctional properties. LWT, 172, [114215]. https://doi.org/10.1016/j.lwt.2022.114215

Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, ZL., van Santen, JA., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, HE. ... Medema, MH. (2023). MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research, 51(D1), D603-D610. [gkac1049]. https://doi.org/10.1093/nar/gkac1049

Bialik, O. M., Bookman, R., Elyashiv, H., Marietou, A., Saar, R., Rivlin, T., Taha, N., Benaltabet, T., Lotem, N., Funaro, E. & Antler, G. (2022). Tropical storm-induced disturbance of deep-water porewater profiles, Gulf of Aqaba. Marine Geology, 453, [106926]. https://doi.org/10.1016/j.margeo.2022.106926

Meyer, L-E., Hobisch, M. & Kara, S. (2022). Process intensification in continuous flow biocatalysis by up and downstream processing strategies. Current Opinion in Biotechnology, 78, [102835]. https://doi.org/10.1016/j.copbio.2022.102835

Zhang, M., Gao, Y., Yu, C., Wang, J., Weng, K., Li, Q., He, Y., Guo, Z., Zhang, H., Huang, J. & Li, L. (2022). Transcriptome analysis of malate-induced Schizochytrium sp. FJU-512 reveals a novel pathway for biosynthesis of docosahexaenoic acid with enhanced expression of genes responsible for acetyl-CoA and NADPH accumulation. Frontiers in Microbiology, 13, [1006138]. https://doi.org/10.3389/fmicb.2022.1006138

Nahuel Chanquia, S., Vig Benfeldt, F., Petrovai, N., Santner, P., Hollmann, F., Eser, B. E. & Kara, S. (2022). Immobilization and Application of Fatty Acid Photodecarboxylase in Deep Eutectic Solvents. ChemBioChem, 23(23), [e202200482]. https://doi.org/10.1002/cbic.202200482

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2022). Coupling the benefits of grassland crops and green biorefining to produce protein, products and services for the green transition. In I. Delaby, R. Beaumont, V. Brocard, S. Lemauviel-Lavenant, S. Plantureux, F. Vertès & J. I. Peyraud (Eds.), Grassland at the heart of circular and sustainable food systems (pp. 83-94). INRAE. Grassland Science in Europe Vol. 27 https://www.europeangrassland.org/fileadmin/documents/Infos/Printed_Matter/Proceedings/EGF2022.pdf

Mathiasen, S. S., Ploug Frydenberg, R., Kleinert, M., Guo, Z., Kiens, B. & Wiking, L. (2022). SPECIAL MILK LIPIDS FOR HEALTH (SMiL) - COMBINED FRACTIONATION PROCEDURES TO OBTAIN MILK FAT FRACTIONS WITH HEALTH BENEFICIAL PROFILES. Poster session presented at Arla Food for Health Conference 2022, Viby, Denmark.

Santos Oliveira, J. M., Sabatini, C. A., Santos-Neto, A. J. & Foresti, E. (2022). Broken into pieces: the challenges of determining sulfonated azo dyes in biological reactor effluents using LC-ESI-MS/MS analysis. Environmental Pollution, 318, [120877]. https://doi.org/10.1016/j.envpol.2022.120877

Santos Oliveira, J. M., Damianovic, M. H. R. Z. & Foresti, E. (2022). Two-stage anaerobic digestion system for biotransformation of an azo dye in the presence of sulfate: Minimizing competition for reducing equivalents. Journal of Water Process Engineering, 47, [102819]. https://doi.org/10.1016/j.jwpe.2022.102819

Dalby, F. R., Kofoed, M. V. W., Guldberg, L. B. & Feilberg, A. (2022). Acidification with inorganic and organic acids to reduce greenhouse gas emission from pig slurry: Acidification with inorganic and organic acids to reduce greenhouse gas emission from pig slurry. Abstract from 8th International Greenhouse Gas & Animal Agriculture Conference, Orlando, United States.

Svenningsen, E. B., Ottosen, R. N., Jørgensen, K. H., Nisavic, M., Larsen, C. K., Hansen, B. K., Wang, Y., Lindorff-Larsen, K., Tørring, T., M. Hacker, S. & Poulsen, T. (2022). The covalent reactivity of functionalized 5-hydroxy-butyrolactams is the basis for targeting of fatty acid binding protein 5 (FABP5) by the neurotrophic agent MT-21. Poster session presented at EMBO Chemical Biology, Heidelberg, Germany.

Rasmussen, C., Mortensen, E. Ø., Wenzel, H., Ambye-Jensen, M. & Jørgensen, U. (2022). Scenarier for anvendelse af biomasseressourcer i fremtidens produktionssystemer for fødevarer, energi og materialer inden for rammerne af gældende politik for landbrug, miljø, klima, natur og energi. Aarhus Universitet - DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Meyer, L-E., Fogtmann Hauge, B., Müller Kvorning, T., De Santis, P. & Kara, S. (2022). Continuous oxyfunctionalizations catalyzed by unspecific peroxygenase. Catalysis Science & Technology, 12(21), 6473-6485. https://doi.org/10.1039/D2CY00650B

Vernet, G., Hobisch, M. & Kara, S. (2022). Process intensification in oxidative biocatalysis. Current Opinion in Green and Sustainable Chemistry, 38, [100692]. https://doi.org/10.1016/j.cogsc.2022.100692

Jurkas, V., Weissensteiner, F., De Santis, P., Vrabl, S., A. Sorgenfrei, F., Bierbaumer, S., Kara, S., Kourist, R., P. Wangikar, P., Winkler, C. K. & Kroutil, W. (2022). Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion. Angewandte Chemie, 61(40), [e202207971]. https://doi.org/10.1002/anie.202207971

Hobisch, M., De Santis, P., Serban, S., Basso, A., Byström, E. & Kara, S. (2022). Peroxygenase-Driven Ethylbenzene Hydroxylation in a Rotating Bed Reactor. Organic Process Research & Development, 26(9), 2761-2765. https://doi.org/10.1021/acs.oprd.2c00211

De Santis, P., Petrovai, N., Meyer, L-E., Hobisch, M. & Kara, S. (2022). A holistic carrier-bound immobilization approach for unspecific peroxygenase. Frontiers in chemistry, 10, [985997]. https://doi.org/10.3389/fchem.2022.985997

Petermeier, P., Bittner, J. P., Müller, S., Byström, E. & Kara, S. (2022). Design of a green chemoenzymatic cascade for scalable synthesis of bio-based styrene alternatives. Green Chemistry, 24(18), 6889-6899. https://doi.org/10.1039/d2gc01629j

Pourjafar, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2022). Construction, expression and functional characterization of an engineered antibody against tumor antigen MUC-1C. Protein Expression and Purification, 199, [106148]. https://doi.org/10.1016/j.pep.2022.106148

Zhou, Y., Pedersen, J. N., Pedersen, J. N., Jones, N. C., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Gao, R. & Guo, Z. (2022). Superanionic Solvent-Free Liquid Enzymes Exhibit Enhanced Structures and Activities. Advanced Science, 9(32), [2202359]. https://doi.org/10.1002/advs.202202359

Renaudeau, D., Jensen, S. K., Ambye-Jensen, M., Adler, S., Bani, P., Juncker, E. & Stødkilde, L. (2022). Nutritional values of forage-legume-based silages and protein concentrates for growing pigs. Animal : an international journal of animal bioscience, 16(7), [100572]. https://doi.org/10.1016/j.animal.2022.100572

Andersen, F. D., Pedersen, K. D., Wilkens Juhl, D., Mygind, T., Chopin, P., B. Svenningsen, E., Poulsen, T. B., Braad Lund, M., Schramm, A., Gotfredsen, C. H. & Tørring, T. (2022). Triculamin: An Unusual Lasso Peptide with Potent Antimycobacterial Activity. Journal of Natural Products, 85(6), 1514-1521. https://doi.org/10.1021/acs.jnatprod.2c00065

Bogojevic, O., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2022). Designer phospholipids – structural retrieval, chemo-/bio- synthesis and isotopic labeling. Biotechnology Advances, 60, [108025]. https://doi.org/10.1016/j.biotechadv.2022.108025

Li, Z., Anankanbil, S., Li, L., Lyu, J., Nadzieja, M. & Guo, Z. (2023). Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions. Food Hydrocolloids, 134, [108014]. https://doi.org/10.1016/j.foodhyd.2022.108014

Ma, Y., Zhang, N., Vernet, G. & Kara, S. (2022). Design of Fusion Enzymes for Biocatalytic Applications in Aqueous and Non-aqueous Media. Frontiers in Bioengineering and Biotechnology, 10, [944226]. https://doi.org/10.3389/fbioe.2022.944226

Yang, T., Zhang, Y., Xu, L., Zhu, H., Zhang, J., Guo, Z., Huang, F. & Zheng, M. (2022). pH-Switchable Pickering Interfacial Biocatalysis: One-Pot Enzymatic Synthesis of Phytosterol Esters with Low-Value Rice Bran Oi. ACS Sustainable Chemistry & Engineering, 10(21), 6963–6972. https://doi.org/10.1021/acssuschemeng.1c08719

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Revised 21.03.2023

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