Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Ma, Y. & Eser, B. E. (2025). Bridging Disciplines in Enzyme Kinetics: Understanding Steady-State, Transient-State and Performance Parameters. Catalysts, 15(12), Article 1139. https://doi.org/10.3390/catal15121139

Vaupel, S., Meyer, L. E., Domínguez de María, P. & Kara, S. (2025). Molar-Scale Phenolic Acid Decarboxylation Using Thermostable Biocatalysts and Enzyme-Compatible Deep Eutectic Solvents. ChemSusChem, 18(24), Article e202501755. https://doi.org/10.1002/cssc.202501755

Behan, J. A., Barrière, F., Geneste, F., Bodin, C., Vautier, A., Guihéneuf, S., Colavita, P. E., Philips, J., Reiner, J. E., Tschulkow, M. & Nimmegeers, P. (2025). Challenges and opportunities for the production of sustainable active species for redox flow batteries in bioelectrochemical systems. Chemical Engineering Journal, 524, Article 169515. https://doi.org/10.1016/j.cej.2025.169515

Palacios Jaramillo, P. A. & Kofoed, M. V. W. (2026). Performance of mesophilic and thermophilic acetogenic strains for CO2 -to-acetate production. Biomass and Bioenergy, 207, Article 108599. https://doi.org/10.1016/j.biombioe.2025.108599

Calegari, R. P., Schutgens, M., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Selenium and Cysteine Synergy: Enhancing methane production rates in hyperthermophilic methanogens. 1604. Abstract from FEMS MICRO 2025, Milan, Italy.

Ahmmed, M. S., Otten, C. K., Kofoed, M. V. W. & Batstone, D. J. (2025). Impact of rheology on mass transfer and bubble diameter in wastewater treatment systems. Chemical Engineering Research and Design, 224, 523-532. https://doi.org/10.1016/j.cherd.2025.11.039

Falkeborg, M., Berton-Carabin, C. C. & Cheong, L. Z. (2016). Ionic Liquids in the Synthesis of Antioxidant Targeted Compounds. In Ionic Liquids in Lipid Processing and Analysis: Opportunities and Challenges (pp. 317-346). Elsevier Inc.. https://doi.org/10.1016/B978-1-63067-047-4.00010-6

Falkeborg, M. F., Roda-Serrat, M. C., Burnæs, K. L. & Nielsen, A. L. D. (2018). Stabilising phycocyanin by anionic micelles. Food Chemistry, 239, 771-780. https://doi.org/10.1016/j.foodchem.2017.07.007

Wijesooriya, M. M., Calegari, R. P., Kofoed, M. V. W. & Ottosen, L. D. M. (2025). Exploring increased concentration of capture agent and methanogenic activity in Bio-Integrated Carbon Capture and Utilization (BICCU) reactors. Abstract ID: 4039 / Poster Number: 372.17P (770=. Poster session presented at FEMS MICRO 2025, Milan, Italy.

Wijesooriya, M. M., Kofoed, M. V. W., Ottosen, L. D. M., Nielsen, J. L. & Eskildsen, M. (2025). Exploring methanogen-carbon capture agent interactions in bio-integrated carbon capture and utilization (BICCU) into biomethane. O1A-002 (29). Abstract from The 5th International Conference on Biogas Microbiology, Galway, Ireland.

Nielsen, A. K. H., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Production of acetate from flue gas-CO₂ by membrane-based bio-integrated carbon capture and utilization. Chemical Engineering Journal, 526, Article 170633. https://doi.org/10.1016/j.cej.2025.170633

Ma, Y., Smith, G., Haaijer-Vroomen, S. S. C. M., Olde Olthof, S., Welte, C. U. & Glodowska, M. (2025). Hexavalent Chromium Inhibits Nitrate-Dependent Anaerobic Methane Oxidation While Enriching Denitrifiers: Insights into Microbial Interactions for Simultaneous Methane, Nitrate, and Chromate Removal. ACS ES&T Water, 5(11), 6790-6800. https://doi.org/10.1021/acsestwater.5c00752

Brito, L. F., Luciano, D., Irla, M., Virant, D., Courtade, G. & Brautaset, T. (2025). Identification of MscS as a Key L-Glutamate Exporter in Bacillus methanolicus. Microbial Biotechnology, 18(10), Article e70252. https://doi.org/10.1111/1751-7915.70252

Ng, K. S., Busche, T., Rückert-Reed, C., Bambace, M. F., Sundekilde, U. K. & Schwab, C. (2025). Structural properties of short-chain carboxylic acids and alcohols relate to the molecular and physiological response of Salmonella enterica in an acidic environment. Applied Microbiology and Biotechnology, 109(1), Article 240. https://doi.org/10.1007/s00253-025-13608-w

Cid Gomes, L., da Rosa Garcia, A., Raeisi, F., de Oliveira Barbosa, L. C., Wasalabandara, D., Panakkal Manuel, A., Skovborg, N. L., Hostrup, E. T., Wojtasz, J., Gunnarsson, M., Ambye-Jensen, M. & Bernin, D. (2025). Green Biorefinery Side Stream as a Source of Chlorophyll Pigments, Lignin, and Cellulose for Textile Fibers. ACS Sustainable Chemistry and Engineering, 13(40), 16946-16957. https://doi.org/10.1021/acssuschemeng.5c06653

Zhang, N., Schwarz, E., Bittner, J. P., Jakobtorweihen, S., Smirnova, I., de María, P. D. & Kara, S. (2025). Rational Design of Hydrophilic Deep Eutectic Solvents to Outperform Oxidoreductase Activity in Aqueous Media. ChemCatChem, 17(19), Article e00986. https://doi.org/10.1002/cctc.202500986

Li, X., Zhang, Z., Wang, F., Li, T., Guo, Q., Cui, X., Hansen, H. C. B., Kjøller, R. & Ekelund, F. (2025). Decoding the role of fungal functional groups in dissolved organic matter transformation and humification during co-composting. Bioresource Technology, 438, Article 133230. https://doi.org/10.1016/j.biortech.2025.133230

Brito, L. F., Friis, M. K., Zhu, H., Brautaset, T., Wendisch, V. F. & Irla, M. K. (2025). Tools and Strategies for Engineering Bacillus methanolicus: A Versatile Thermophilic Platform for Sustainable Bioproduction from Methanol and Alternative Feedstocks. Synthetic Biology and Engineering, 3(4). https://doi.org/10.70322/sbe.2025.10016

Sommer, S. G., Christensen, M. L., Norddahl, B., Ambye-Jensen, M. & Roda-Serrat, M. C. (2025). Preface. In Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era (pp. xi-xii). Cambridge University Press.

Jeon, B. S., Kim, E. J., Seo, H., Kim, H., Shin, S., Schlaiß, C., Angenent, L. T., Kim, K. J. & Sang, B. I. (2025). Molecular Chain Elongation Mechanism for n-Caproate Biosynthesis by Megasphaera Hexanoica. Advanced Science, 12(44), Article e06069. https://doi.org/10.1002/advs.202506069

Schwab, C., Lang, H., Stegmüller, S., Hosek, J., Marietou, A., Huertas-Díaz, L., Li, Q., Krings, A. P. S., Zander, A., Kræmer Sundekilde, U. & Richling, E. (2025). Microbial Transformation of Dietary Glycerol Contributes to Intestinal Acrolein Formation and Urinary Excretion. Molecular Nutrition & Food Research, 69(24), Article e70289. https://doi.org/10.1002/mnfr.70289

Ambrose, H. W., Dalby, F. R., Lashkari, S. & Børsting, C. F. (2025). Can diet influence methane emissions from the manure of dairy cows?. Poster session presented at RAMIRAN 2025, Wageningen, Netherlands.

Dalby, F. R., Ambrose, H. W., Lashkari, S. & Børsting, C. F. (2025). Methane emission and organic matter degradation dynamics in cattle manure: Effects of diet and storage temperature. Poster session presented at RAMIRAN 2025, Wageningen, Netherlands.

Huertas-Díaz, L., Gezer, M. E., Marietou, A., Hosek, J., Thams, L., Dalgaard, L. B., Hansen, M. & Schwab, C. (2025). Megasphaera contributes to lactate-driven valerate production in the human gut. Microbiome, 13(1), Article 210. https://doi.org/10.1186/s40168-025-02207-6

Lara, A. R., Andersen, M. B., Madsen, A. A. V., Fønss, K. G., Irla, M., Taymaz-Nikerel, H., Martínez, L. M., Dicke, M. D., Mann, M., Magnus, J. B. & Gosset, G. (2025). Biomanufacturing Potential of Streamlined Cells. Biotechnology and Bioengineering, 122(12), 3309-3318. https://doi.org/10.1002/bit.70070

Fetzer, D. E. L., Coelho, J. A. P. & Ambye-Jensen, M. (2025). Extraction of lipids with supercritical CO₂and downstream processing from grass-clover products from a green biorefinery demonstration platform. Journal of CO2 Utilization, 101, Article 103198. https://doi.org/10.1016/j.jcou.2025.103198

Boffe, P. M., Calegari, R. P., de Souza, D. C. R., da Conceição, P. S., Szymczak, D. A. & Tessaro, D. (2017). Potencial fitoextrator da espécie vegetal Helianthus annuus L. Em solo contaminado por chumbo. Espacios, 38(9), 8.

Mota, L. A., Calegari, R. P., Pinto, A. U., Sica, P., Amorim, D. J., Azevedo, R. A., Gaziola, S. A., Douradinho, R. S., Baptista, A. S. & Arthur, V. (2025). Selenium-biofortified spent yeast cultivated in corn hydrolysate: antioxidant response and biomass production under aerobic and anaerobic conditions. International Microbiology, 28(8), 2829-2844. https://doi.org/10.1007/s10123-025-00722-y

Sica, P., Prado, L. M. L. M., Granja, P., de Carvalho, E. M., Mattos, E. D. C., Calegari, R. P., Silverio, M., Martins, B. C. & Baptista, A. S. (2021). Effects of energy cane (Saccharum spp.) juice on corn ethanol (Zea mays) fermentation efficiency: Integration towards a more sustainable production. Fermentation , 7(1), Article 30. https://doi.org/10.3390/fermentation7010030

Amorim Mota, L., Maria da Silva, A. P., Alberto da Silva, E., Maria Ferreira Lima Leite, G., Perez Calegari, R. & Sampaio Baptista, A. (2022). Ability of the Saccharomyces cerevisiae Y904 to tolerate and adapt to high concentrations of selenium. Brazilian Journal of Biosystems Engineering, 16, Article 1066. https://doi.org/10.18011/bioeng.2022.v16.1066

Stødkilde, L., Ingerslev, A. K., Lærke, H. N., Jørgensen, E. T., Ambye-Jensen, M. & Jensen, S. K. (2025). Evaluating protein digestibility of biorefined forage crops in growing pigs: effects of plant species and precipitation methods. ANIMAL, 19(10), Article 101653. https://doi.org/10.1016/j.animal.2025.101653

Johnsen, N. K., Chaiyasarn, S., Guo, Z., Han, J. & Eser, B. E. (2025). Cobalamin-Dependent Aryl Methyl Ether O-Demethylases: Promising Enzymes for Biocatalytic Applications from Lignin Valorization to Organic Synthesis. ChemCatChem, 17(21), 1-19. Article e00877. https://doi.org/10.1002/cctc.202500877

Ambrose, H. W., Feilberg, A., Schwab, C. & Kofoed, M. V. W. (2025). Impact of chemical and biological additives on microbial community and methane emissions in pig slurry storage. 41. Abstract from 13th International Symposium on Anaerobic Microbiology, Leipzig, Germany.

Jensen, T. B., Anand, M., Batstone, D. & Kofoed, M. V. W. (2025). Here comes the sun: intermittent operation of hydrogen-based in situ biomethanation at pilot-scale. Applied Energy, 401(Part A), Article 126601. https://doi.org/10.1016/j.apenergy.2025.126601

Ambrose, H. W., Bambace, M. F., Marietou, A., Hosek, J., Feilberg, A., Kofoed, M. V. W. & Schwab, C. (2025). Novel Biological Approach to Mitigate Methane Emissions from Livestock Slurry through Microbial Conversion of Glycerol. Environmental Science & Technology, 59(38), 20512-20525. https://doi.org/10.1021/acs.est.4c12999

Rasmussen, M. H., Møller, S. L. B., Svenningsen, E. B., Tørring, T. & Poulsen, T. B. (2025). P450 Enzyme LyoI Performs Hydro-2,2'-Bifuran Oxidation in the Polyether Ionophore Lysocellin. Angewandte Chemie International Edition, 64(43), Article e202507847. https://doi.org/10.1002/anie.202507847

Calegari, R. P., Mendes, K. F., Martins, B. C., Pimpinato, R. F., Baptista, A. S. & Tornisielo, V. L. (2018). Removal of diuron and hexazinone from public water supply using a filter system. Planta Daninha, 36, Article e018183662. https://doi.org/10.1590/S0100-83582018360100147

Silva, A. P. M. D., Sica, P., Pires, L. D. A. N., Spironello, L., Mota, L. A., Peixoto, G. T., Calegari, R. P., Basso, T. O., Tonso, A., Gomes, M. P., Somessari, S. L., Duarte, H. G., Somessari, E. S. R., Carvalho, R. D. S. & Baptista, A. S. (2023). Integration of Corn and Cane for Ethanol Production: Effects of Lactobacilli Contamination on Fermentative Parameters and Use of Ionizing Radiation Treatment for Disinfection. Fermentation , 9(2), Article 89. https://doi.org/10.3390/fermentation9020089

Fieira, C., Oliveira, F., Calegari, R. P., Machado, A. & Coelho, A. R. (2013). In vitro and in vivo antifungal activity of natural inhibitors against Penicillium expansum. Food Science and Technology, 33(SUPPL.1), 40-46. https://doi.org/10.1590/S0101-20612013000500007

Silverio, M. S., Calegari, R. P., Leite, G. M. F. L., Prado, L. M. L. M., Martins, B. C., da Silva, E. A., Neto, J. P., Gomig, A. & Baptista, A. S. (2021). VINASSE FROM THE BRAZILIAN LIGNOCELLULOSIC ETHANOL PROCESS: CHEMICAL COMPOSITION AND POTENTIAL FOR BIOPROCESSES. Brazilian Journal of Biosystems Engineering, 15(1), 42-68. https://doi.org/10.18011/bioeng2021v15n1p42-68

Anacleto, T. M., Oliveira, H. R., da Silva, C. F. C., Calegari, R. P., Rocha, M. E., Figueira, T. A., Silva, M. C., Masuda, L. S. M., Paquet, R., de Oliveira, V. P. & Enrich-Prast, A. (2022). ANAEROBIC DIGESTION AS A TOOL TO REDUCE ANTHROPOGENIC IMPACTS ON AQUATIC ECOSYSTEMS. Oecologia Australis, 26(2), 169-186. https://doi.org/10.4257/oeco.2022.2602.07

Calegari, R. P., da Silva, E. A., da Silva, A. P. M., Gomes, M. P., Mota, L. A., Arthur, V. & Baptista, A. S. (2023). Wort disinfection treatment with electron beam for bioethanol production. Scientia Agricola, 80, Article e20210260. https://doi.org/10.1590/1678-992X-2021-0260

Johnsen, N. K., Marcher, D. M. W., Nielsen, M. B., Zhang, Y., Guo, Z. & Eser, B. E. (2025). A Thermostable Fatty Acid Hydratase from Marinitoga Piezophila with Low Temperature Optimum and Broad Product Scope. ChemBioChem, 26(17), Article e202500081. https://doi.org/10.1002/cbic.202500081

Mekureyaw, M. F., Junker, A., Bai, L., Petersen, A. E., Wei, Z. & Guo, Z. (2025). Biodegradation of perfluorooctanoic acid (PFOA) by laccase from Agaricus bisporus via oxidative decarboxylation. Journal of Hazardous Materials Advances, 19, 1-11. Article 100837. https://doi.org/10.1016/j.hazadv.2025.100837

Huang, Z., Piao, Y., Abuduwupuer, X., Ding, S., Chen, T., Jiang, S., Ding, Y., Guo, Z. & Gao, R. (2025). Design of a recombinant Pseudomonas strain with enhanced degradation viability towards catecholic compounds by reconstituting EDO-hydrolysis pathway. Journal of Environmental Chemical Engineering, 13(5), 1-12. Article 118338. https://doi.org/10.1016/j.jece.2025.118338

Benmebarek, I. E., González-Serrano, D. J., Bechtner, J. D., Galindo, J. M., Martínez, M. M., Sánchez-Verdú, M. P., Khalid, W. & Moreno, A. (2025). Microwave-assisted subcritical water extraction of low methoxyl pectin from pistachio industry waste: Optimization, characterization, emulsification, and gelation mechanism. Carbohydrate Polymers, 368, Article 124107. https://doi.org/10.1016/j.carbpol.2025.124107

Bechtner, J. D., Lopez-Rodulfo, I. M., Gallego-Lobillo, P., Hosek, J., Schwab, C. & Martinez, M. M. (2025). Polyphenols non-covalently bound to artificial plant cell walls are readily accessible to fecal microbiota and transiently alter fermentation activity. Food Chemistry, 493(part 2), Article 145817. https://doi.org/10.1016/j.foodchem.2025.145817

Ng, K. S. (2025). Old natural compounds that are underexploited: Antimicrobial mode of action of short-chain carboxylic acids and their potential as biopreservatives. [PhD thesis, Aarhus University].

Sommer, S. G., Christensen, M. L., Norddahl, B., Ambye-Jensen, M. & Roda-Serrat, M. C. (Eds.) (2025). Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era. Cambridge University Press. https://doi.org/10.1017/9781108950831

Ma, Y. (2024). Design of Enzymatic Oxyfunctionalizations Catalyzed by Fusion Enzymes in Non-aqueous Media. [PhD thesis, Aarhus University].

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