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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Krzyaniak, M. D., Eser, B. E., Ellis, H. R., Fitzpatrick, P. F. & McCracken, J. (2013). Pulsed EPR study of amino acid and tetrahydropterin binding in a tyrosine hydroxylase nitric oxide complex: evidence for substrate rearrangements in the formation of the oxygen-reactive complex. Biochemistry, 52(47), 8430-41. https://doi.org/10.1021/bi4010914

McCracken, J., Eser, B. E., Mannikko, D., Krzyaniak, M. D. & Fitzpatrick, P. F. (2015). HYSCORE Analysis of the Effects of Substrates on Coordination of Water to the Active Site Iron in Tyrosine Hydroxylase. Biochemistry, 54(24), 3759-71. https://doi.org/10.1021/acs.biochem.5b00363

Zhang, X., Eser, B. E., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). Structural Basis for Iron-Mediated Sulfur Transfer in Archael and Yeast Thiazole Synthases. Biochemistry, 55(12), 1826-38. https://doi.org/10.1021/acs.biochem.6b00030

Eser, B. E., Zhang, X., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). From Suicide Enzyme to Catalyst: The Iron-Dependent Sulfide Transfer in Methanococcus jannaschii Thiamin Thiazole Biosynthesis. Journal of the American Chemical Society, 138(11), 3639-42. https://doi.org/10.1021/jacs.6b00445

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2011). Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: a new reaction of diiron enzymes. Angewandte Chemie International Edition, 50(31), 7148-52. https://doi.org/10.1002/anie.201101552

Ambye-Jensen, M., Balzarotti, R., Thomsen, S. T., Fonseca, C. & Kádár, Z. (2018). Combined ensiling and hydrothermal processing as efficient pretreatment of sugarcane bagasse for 2G bioethanol production. Biotechnology for Biofuels, 11(1), Article 336. https://doi.org/10.1186/s13068-018-1338-y

Zhang, H., Lopez, P. C., Holland, C., Lunde, A., Ambye-Jensen, M., Felby, C. & Thomsen, S. T. (2018). The multi-feedstock biorefinery – Assessing the compatibility of alternative feedstocks in a 2G wheat straw biorefinery process. GCB Bioenergy, 10(12), 946-959. https://doi.org/10.1111/gcbb.12557

He, Y., Wang, X., Guo, Z., Jiang, Y. & Chen, F. (2019). Enzymatic ethanolysis subjected to Schizochytrium biomass: Sequential processing for DHA enrichment and biodiesel production. Energy Conversion and Management, 184, 159-171. https://doi.org/10.1016/j.enconman.2019.01.051

Zhou, Y., Pérez, B., Hao, W., Lv, J., Gao, R. & Guo, Z. (2019). The additive mutational effects from surface charge engineering: A compromise between enzyme activity, thermostability and ionic liquid tolerance. Biochemical Engineering Journal, 148, 195-204. https://doi.org/10.1016/j.bej.2018.07.020

Vanoppen, M., van Vooren, T., Gutierrez, L., Roman, M., Coué, LJ.-P., Verbeken, K., Philips, J. & Verliefde, A. R. D. (2019). Secondary treated domestic wastewater in reverse electrodialysis: what is the best pre-treatment? Separation and Purification Technology, 218, 25-42. https://doi.org/10.1016/j.seppur.2018.12.057

Scoma, A., Heyer, R., Rifai, R., Dandyk, C., Marshall, I., Kerckhof, F. M., Marietou, A., Boshker, H. T. S., Meysman, F. J. R., Malmos, K. G., Vosegaard, T., Vermeir, P., Banat, I. M., Benndorf, D. & Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME Journal, 13(4), 1004-1018. https://doi.org/10.1038/s41396-018-0324-5

pesci, L., Kara, S. & Liese, A. (2018). Enzymkinetik. In K.-E. Jaeger, A. Liese & C. Syldatk (Eds.), Einführung in die Enzymtechnologie (pp. 53-75). Springer. https://doi.org/10.1007/978-3-662-57619-9_4

Kara, S. & von Langermann, J. (2018). Prinzipien der angewandten Biokatalyse. In K.-E. Jaeger, A. Liese & C. Syldatk (Eds.), Einführung in die Enzymtechnologie (pp. 225-242). Springer. https://doi.org/10.1007/978-3-662-57619-9_13

Zhou, Y., Jones, N. C., Pedersen, J. N., Perez, B., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Kristensen, P., Gao, R. & Guo, Z. (2019). Insight into the structure and activity of surface-engineered lipase biofluids. ChemBioChem, 20(10), 1266-1272. https://doi.org/10.1002/cbic.201800819

Santamaria-Fernandez, M., Ambye-Jensen, M., Damborg, V. K. & Lübeck, M. (2019). Demonstration-scale protein recovery by lactic acid fermentation from grass clover – a single case of the production of protein concentrate and press cake silage for animal feeding trials. Biofuels, Bioproducts and Biorefining, 13(3), 502-513. https://doi.org/10.1002/bbb.1957

Philips, J., Monballyu, E., Georg, S., De Paepe, K., Prévoteau, A., Rabaey, K. & Arends, J. B. A. (2019). An Acetobacterium strain isolated with metallic iron as electron donor enhances iron corrosion by a similar mechanism as Sporomusa sphaeroides. F E M S Microbiology Ecology, 95(2), Article fiy222. https://doi.org/10.1093/femsec/fiy222

Jensen, D., Kofoed, M. V. W., Ottosen, L. D. M. & Rotaru, A.-E. (2018). Producing PHBs from renewable sources: Using surplus electricity to produce bioplastics from CO2. Poster session presented at
DMS ANNUAL CONGRESS 2018, Copenhagen, Denmark.

Yesiltas, B., Garcia-Moreno, P., Sørensen, A.-D., Anankanbil, S., Guo, Z. & Jacobsen, C. (2018). Effects of modified DATEMs with different alkyl chain lengths on improving oxidative and physical stability of 70% fish oil-in-water emulsions. Journal of Agricultural and Food Chemistry, 66(47), 12512-12520. https://doi.org/10.1021/acs.jafc.8b04091

Anankanbil, S., Pérez, B., Cheng, W., Ambrósio, G. & Guo, Z. (2019). Caffeoyl maleic fatty alcohol monoesters: Synthesis, characterization and antioxidant assessment. Journal of Colloid and Interface Science, 536, 399-407. https://doi.org/10.1016/j.jcis.2018.10.078

Hollmann, F., Kara, S., Opperman, D. J. & Wang, Y. (2018). Biocatalytic synthesis of lactones and lactams. Chemistry - An Asian Journal, 13(23), 3601-3610. https://doi.org/10.1002/asia.201801180

Hümmer, M., Kara, S., Liese, A., Huth, I., Schrader, J. & Holtmann, D. (2018). Synthesis of (-)-menthol fatty acid esters in and from (-)-menthol and fatty acids – novel concept for lipase catalyzed esterification based on eutectic solvents. Molecular Catalysis , 458(A), 67-72. https://doi.org/10.1016/j.mcat.2018.08.003

Huang, L., Sayoga, G. V., Hollmann, F. & Kara, S. (2018). Horse liver alcohol dehydrogenase-catalyzed oxidative lactamization of amino alcohols. A C S Catalysis, 8(9), 8680-8684. https://doi.org/10.1021/acscatal.8b02355

ILYASOGLU, H., Anankanbil, S., Nadzieja, M. & Guo, Z. (2018). Lipophilization of chitin as novel polymeric stabilizer for improved oil-in-water emulsions. Colloid and Polymer Science, 296(11), 1841-1848. https://doi.org/10.1007/s00396-018-4410-z

Anankanbil, S., Mose, J. H., Pérez, B., Cheng, W., Pedersen, J. N. & Guo, Z. (2019). Mapping the location of DATEM in multi-phase systems: Synthesis and characterization of spin-label probe analogues. Food Chemistry, 275, 474-479. https://doi.org/10.1016/j.foodchem.2018.09.140

Yong-Jin, H., Lin, G., Rao, X., Chen, L., Huang, J., Wang, M., Guo, Z. & Chen, B. (2018). Microalga Isochrysis galbana in feed for Trachinotus ovatus: effect on growth performance and fatty acid composition of fish fillet and liver. Aquaculture International, 26(5), 1261-1280. https://doi.org/10.1007/s10499-018-0282-y

Philips, J., Van den Driessche, N., Prevotaeu, A., Gralnick, J. A., Arends, J. BA. & Rabaey, K. (2018). A new Shewanella isolate enhances corrosion by using metallic iron as electron donor with fumarate as electron acceptor. Applied and Environmental Microbiology, 84(20), Article e01154-18. https://doi.org/10.1128/AEM.01154-18

Dijk, J. A., Breugelmans, P., Philips, J., Haest, P. J., Smolders, E. & Springael, D. (2008). Catalyzed reporter deposition-fluorescent in situ hybridization (CARD-FISH) detection of Dehalococcoides. Journal of Microbiological Methods, 73(2), 142-147. https://doi.org/10.1016/j.mimet.2008.01.012

Haest, P. J., Philips, J., Springael, D. & Smolders, E. (2011). The reactive transport of trichloroethene is influenced by residence time and microbial numbers. Journal of Contaminant Hydrology, 119(1-4), 89-98. https://doi.org/10.1016/j.jconhyd.2010.09.011

Philips, J., Springael, D. & Smolders, E. (2011). A three-layer diffusion-cell to examine bioenhanced dissolution of chloroethene dense non-aqueous phase liquid. Chemosphere, 83(7), 991-996. https://doi.org/10.1016/j.chemosphere.2011.02.012

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Distribution of a dechlorinating community in relation to the distance from a trichloroethene dense non-aqueous phase liquid in a model aquifer. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Philips, J., Van Muylder, R., Springael, D. & Smolders, E. (2013). Electron donor limitations reduce microbial enhanced trichloroethene DNAPL dissolution: a flux-based analysis using three-layer diffusion-cells. Chemosphere, 91(1), 7-13. https://doi.org/10.1016/j.chemosphere.2012.11.016

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Inhibition of Geobacter Dechlorinators at Elevated Trichloroethene Concentrations Is Explained by a Reduced Activity Rather than by an Enhanced Cell Decay. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Paul, L., Herrmann, S., Koch, C. B., Philips, J. & Smolders, E. (2013). Inhibition of microbial trichloroethylene dechorination by Fe (III) reduction depends on Fe mineralogy: A batch study using the bioaugmentation culture KB-1. Water Research, 47(7), 2543-2554. https://doi.org/10.1016/j.watres.2013.02.029

Philips, J., Maes, N., Springael, D. & Smolders, E. (2013). Acidification due to microbial dechlorination near a TCE DNAPL is overcome with pH buffer or formate as electron donor: experimental demonstration in diffusion-cells. Journal of Contaminant Hydrology, 147, 25-33. https://doi.org/10.1016/j.jconhyd.2013.02.002

Philips, J., Miroshnikov, A., Haest, P. J., Springael, D. & Smolders, E. (2014). Motile Geobacter dechlorinators migrate into a model source zone of trichloroethene dense non-aqueous phase liquid: Experimental evaluation and modeling. Journal of Contaminant Hydrology, 170, 28-38. https://doi.org/10.1016/j.jconhyd.2014.09.010

Chen, S., Rotaru, A.-E., Liu, F., Philips, J., Woodard, T. L., Nevin, K. P. & Lovley, D. R. (2014). Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures. Bioresource Technology, 173, 82-86. https://doi.org/10.1016/j.biortech.2014.09.009

Philips, J., Verbeeck, K., Rabaey, K. & Arends, J. B. A. (2016). Electron transfer mechanisms in biofilms. In Microbial Electrochemical and Fuel Cells (pp. 67-113). Elsevier. https://doi.org/10.1016/C2014-0-01767-4

Zhang, X., Philips, J., Roume, H., Guo, K., Rabaey, K. & Prevoteau, A. (2017). Rapid and quantitative assessment of redox conduction across electroactive biofilms via double potential step chronoamperometry. ChemElectroChem, 4(5), 1026-1036. https://doi.org/10.1002/celc.201600853

Philips, J., Rabaey, K., R. Lovley, D. & Vargas, M. (2017). Biofilm formation by Clostridium ljungdahlii is induced by sodium chloride stress: Experimental evaluation and transcriptome analysis. PLOS ONE, 12(1), Article e0170406. https://doi.org/10.1371/journal.pone.0170406

Zeng, S., Liu, J., Anankanbil, S., Chen, M., Guo, Z., P. Adams, J., Snajdrova, R. & Li, Z. (2018). Amide Synthesis via Aminolysis of Ester or Acid with an Intracellular Lipase. A C S Catalysis, 8(9), 8856-8865. https://doi.org/10.1021/acscatal.8b02713

Pérez, B., Coletta, A., Pedersen, J. N., Petersen, S. V., Periole, X., Pedersen, J. S., Sessions, R. B., Guo, Z., Perriman, A. & Schiøtt, B. (2018). Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases. Scientific Reports, 8(1), Article 12293. https://doi.org/10.1038/s41598-018-29871-z

Engel, J., Opperman, D. J., Hollmann, F. & Kara, S. (2016). Characterisation of a Convergent Enzymatic Cascade for ε-Caprolactone Synthesis. Poster session presented at 8 th International Congress on Biocatalysis, Hamburg, Schleswig-Holstein, Germany.

Engel, J., Mthethwa, K. S., Opperman, D. J. & Kara, S. (2017). Newly Designed and Discovered Monooxygenases for Synthesis of ECL. Poster session presented at The 19th triennial International Symposium on Flavins and Flavoproteins , Groningen, Netherlands. http://businessdocbox.com/Biotech_and_Biomedical/67687944-July-2-6-2017-groningen-the-netherlands.html

Chowdhury, M. R., Lashkari, S., Jensen, S. K., Ambye-Jensen, M. & Weisbjerg, M. R. (2018). Effects of Heat Treatment of Green Protein on in Situ Protein Disappearance and in Vitro Fatty Acid Biohydrogenation. Journal of Agricultural and Food Chemistry, 66(30), 8169-8178. https://doi.org/10.1021/acs.jafc.8b02176

Villadsen, N. L., Hansen, B. K., Svenningsen, E. B., Jørgensen, K. H., Tørring, T. & Poulsen, T. B. (2018). Stendomycin and Pantomycin Are Identical Natural Products: Preparation of a Functionalized Bioactive Analogue. Journal of Organic Chemistry, 83(13), 7303-7308. https://doi.org/10.1021/acs.joc.8b00553

Maegaard, K., Kofoed, M. V. W., Agneessens, L., Ottosen, L. D. M., Nielsen, L. P. & Revsbech, N. P. (2018). A methanogenic biofilm for biogas upgrading - Investigated on a microscale. Poster session presented at Biofilms 8, Aarhus, Denmark.

Corona, A., Parajuli, R., Ambye-Jensen, M., Hauschild, M. Z. & Birkved, M. (2018). Environmental screening of potential biomass for green biorefinery conversion. Journal of Cleaner Production, 189, 344-357. https://doi.org/10.1016/j.jclepro.2018.03.316

Kara, S. & Liese, A. (2010). Enzymatic C–C bond formation, asymmetric. In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology. (pp. 2034-2049). John Wiley & Sons Inc.. https://doi.org/10.1002/9780470054581.eib272

Berheide, M., Peper, S., Kara, S., Sing Long, W., Schenkel, S., Pohl, M., Niemeyer, B. & Liese, A. (2009). Influence of the hydrostatic pressure and pH on the asymmetric 2‐hydroxyketone formation catalyzed by Pseudomonas putida benzoylformate decarboxylase and variants thereof. Biotechnology and Bioengineering, 106(1), 18-26. https://doi.org/10.1002/bit.22650

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