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Institut for Bio- og Kemiteknologi

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, [780092]. https://doi.org/10.3389/fmicb.2021.780092

Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H₂ conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, [100876]. https://doi.org/10.1016/j.biteb.2021.100876

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2021). Ready-to-eat blueberries as fruit-based alternative to deliver probiotic microorganisms and prebiotic compounds. LWT, 142, [111009]. https://doi.org/10.1016/j.lwt.2021.111009

Bambace, M. F., del Rosario Moreira, M., Sánchez-Moreno, C. & De Ancos, B. (2021). Effects of combined application of high-pressure processing and active coatings on phenolic compounds and microbiological and physicochemical quality of apple cubes. Journal of the Science of Food and Agriculture, 101(10), 4256-4265. https://doi.org/10.1002/jsfa.11065

Alvarez, M. V., Bambace, M. F., Quintana, G., Gomez-Zavaglia, A. & del Rosario Moreira, M. (2021). Prebiotic-alginate edible coating on fresh-cut apple as a new carrier for probiotic lactobacilli and bifidobacteria. LWT, 137, [110483]. https://doi.org/10.1016/j.lwt.2020.110483

Bambace, M. F., Alvarez, M. V. & del Rosario Moreira, M. (2019). Novel functional blueberries: Fructo-oligosaccharides and probiotic lactobacilli incorporated into alginate edible coatings. Food Research International, 122, 653-660. https://doi.org/10.1016/j.foodres.2019.01.040

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2019). Prebiotic edible coatings with biopreservatives: Quality and safety of fresh apple cubes. Journal of Food Process Engineering, 42(2), [e12971]. https://doi.org/10.1111/jfpe.12971

Bambace, M. F., Gerard, L. M. & del Rosario Moreira, M. (2018). An approach to improve the safety and quality of ready-to-eat blueberries. Journal of Food Safety, 39(2). https://doi.org/10.1111/jfs.12602

Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), [106390]. https://doi.org/10.1016/j.jece.2021.106390

Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), [9295]. https://doi.org/10.3390/su13169295

Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in applied microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004

Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. https://doi.org/10.1038/s41396-021-01061-2

Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, [117528]. https://doi.org/10.1016/j.watres.2021.117528

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, [126860]. https://doi.org/10.1016/j.jhazmat.2021.126860

Scoma, A. (2021). Functional groups in microbial ecology: updated definitions of piezophiles as suggested by hydrostatic pressure dependence on temperature. ISME Journal, 15(7), 1871-1878. https://doi.org/10.1038/s41396-021-00930-0

Nagy, V., Podmaniczki, A., Vidal-Meireles, A., Kuntam, S., Herman, É., Kovács, L., Tóth, D., Scoma, A. & Tóth, S. Z. (2021). Thin cell layer cultures of Chlamydomonas reinhardtii L159I-N230Y, pgrl1 and pgr5 mutants perform enhanced hydrogen production at sunlight intensity. Bioresource Technology, 333, [125217]. https://doi.org/10.1016/j.biortech.2021.125217

Liang, N., Neužil-Bunešová, V., Tejnecký, V., Gänzle, M. & Schwab, C. (2021). 3-Hydroxypropionic acid contributes to the antibacterial activity of glycerol metabolism by the food microbe Limosilactobacillus reuteri. Food Microbiology, 98, [103720]. https://doi.org/10.1016/j.fm.2020.103720

Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K. (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. International Journal of Systematic and Evolutionary Microbiology, 71(3), [004673]. https://doi.org/10.1099/ijsem.0.004673

Zhang, Z., Cui, L., Zhang, Y., Klausen, L. H., Chen, M., Sun, D., Xu, S., Kang, S. & Shi, J. (2021). Regulation of carboxyl groups and structural defects of graphitic carbon nitride via environmental-friendly glucose oxidase ring-opening modulation. Applied Catalysis B: Environmental, 297, [120441]. https://doi.org/10.1016/j.apcatb.2021.120441

Bittner, J. P., Huang, L., Zhang, N., Kara, S. & Jakobtorweihen, S. (2021). Comparison and Validation of Force Fields for Deep Eutectic Solvents in Combination with Water and Alcohol Dehydrogenase. Journal of Chemical Theory and Computation, 17(8), 5322-5341. https://doi.org/10.1021/acs.jctc.1c00274

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C. & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Hobisch, M., Spasic, J., Malihan-Yap, L., Barone, G. D., Castiglione, K., Tamagnini, P., Kara, S. & Kourist, R. (2021). Internal Illumination to Overcome the Cell Density Limitation in the Scale-up of Whole-cell Photobiocatalysis. ChemSusChem, 14(15), 3219-3225. https://doi.org/10.1002/cssc.202100832

Zhang, N., Steininger, F., Meyer, L-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. https://doi.org/10.1021/acssuschemeng.1c03547

Petermeier, P., Fortuna, C., M. Hübschmann, K., Nahuel Bidart Costoya, G., Tørring, T., Teze, D., Welner, D. H. & Kara, S. (2021). Exploring the in Vitro Operating Window of Glycosyltransferase PtUGT1 from Polygonum tinctorium for a Biocatalytic Route to Indigo Dye. ACS Sustainable Chemistry & Engineering, 9(25), 8497-8506. https://doi.org/10.1021/acssuschemeng.1c01536

Aryal, N., Ottosen, L. D. M., Bentien, A., Pant, D. & Kofoed, M. V. W. (2021). Bioelectrochemical systems for biogas upgrading and biomethane production. I N. Aryal, L. D. Mørck Ottosen, M. Vedel Wegener Kofoed & D. Pant (red.), Emerging Technologies and Biological Systems for Biogas Upgrading (s. 363-382). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00013-1

Zong, L., Zhang, Y., Shao, Z., Wang, Y., Guo, Z., Gao, R. & Eser, B. E. (2021). Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids. Catalysts, 11(6), [665]. https://doi.org/10.3390/catal11060665

Jensen, M. B., de Jonge, N., Dolriis, M. D., Kragelund, C., Holst Fischer, C., Eskesen, M., Noer, K. W., Møller, H. B., Ottosen, L. D. M., Nielsen, J. L. & Kofoed, M. V. W. (2021). Cellulolytic and Xylanolytic Microbial Communities Associated With Lignocellulose-Rich Wheat Straw Degradation in Anaerobic Digestion. Frontiers in Microbiology, 12, [645174]. https://doi.org/10.3389/fmicb.2021.645174

Li, Z., Zhang, Y., Anankanbil, S. & Guo, Z. (2021). Applications of nanocellulosic products in food: Manufacturing processes, structural features and multifaceted functionalities. Trends in Food Science & Technology, 113, 277-300. https://doi.org/10.1016/j.tifs.2021.03.027

Kofoed, M. V. W., Jensen, M. B. & Ottosen, L. D. M. (2021). Biological upgrading of biogas through CO2 conversion to CH4. I Emerging Technologies and Biological Systems for Biogas Upgrading (s. 321-362). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00012-X

Meyer, L-E., Eser, B. E. & Kara, S. (2021). Coupling light with biocatalysis for sustainable synthesis – very recent developments and future perspectives. Current Opinion in Green and Sustainable Chemistry, 31, [100496]. https://doi.org/10.1016/j.cogsc.2021.100496

Röllig, R., Paul, C. E., Claeys-Bruno, M., Duquesne, K., Kara, S. & Alphand, V. (2021). Divorce in the two-component BVMO family: the single oxygenase for enantioselective chemo-enzymatic Baeyer–Villiger oxidations. Organic & Biomolecular Chemistry, 19(15), 3441-3450. https://doi.org/10.1039/D1OB00015B

Zhang, Y., Eser, B. E. & Guo, Z. (2021). A bi‐enzymatic cascade pathway towards optically pure FAHFAs. ChemBioChem, 22(12), 2146-2153. https://doi.org/10.1002/cbic.202100070

Zhang, Y., Eser, B. E., Kougioumtzoglou, G., Eser, Z., Poborsky, M., Kishino, S., Takeuchi, M., Ogawa, J., Kristensen, P. & Guo, Z. (2021). Effects of the engineering of a single binding pocket residue on specificity and regioselectivity of hydratases from Lactobacillus Acidophilus. Biochemical Engineering Journal, 171, [108006]. https://doi.org/10.1016/j.bej.2021.108006

Lyu, J., Gao, R. & Guo, Z. (2021). Galactosyldiacylglycerols: From a Photosynthesis-Associated Apparatus to Structure-Defined In Vitro Assembling. Journal of Agricultural and Food Chemistry, 69(32), 8910–8928. https://doi.org/10.1021/acs.jafc.1c00204

Kara, S. & Rudroff, F. (2021). Perspectives: Enzyme Cascade Design and Modelling. I S. Kara & F. Rudroff (red.), Enzyme Cascade Design and Modelling (s. 179-181). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (2021). Introduction: Enzyme Cascade Design and Modelling. I S. Kara & F. Rudroff (red.), Enzyme Cascade Design and Modelling (s. 1-6). Springer. https://doi.org/10.1007/978-3-030-65718-5

Petermeier, P. & Kara, S. (2021). Enzyme Cascade Reaction Engineering. I S. Kara & F. Rudroff (red.), Enzyme Cascade Design and Modelling (s. 109-124). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (red.) (2021). Enzyme Cascade Design and Modelling. Springer. https://doi.org/10.1007/978-3-030-65718-5

Dos Reis Vechi, N., Agnessens, L. M., Feilberg, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). In situ biomethanation: Inoculum origin influences acetate consumption rate during hydrogen addition. Bioresource Technology Reports, 14, [100656]. https://doi.org/10.1016/j.biteb.2021.100656

Vernet Armengol, G., Salehi, M-S., Lopatka, P., Wilkinson, S. K., Bermingham, S. K., Munday, R., O´Kearney-McMullan, A., Leslie, K., Hone, C. A. & Kappe, C. O. (2021). Cu-Catalyzed Aerobic Oxidation of Diphenyl Sulfide to Diphenyl Sulfoxide within a Segmented Flow Regime: Modeling of a Consecutive Reaction Network and Reactor Characterization. Chemical Engineering Journal, 416, [129045]. https://doi.org/10.1016/j.cej.2021.129045

Aulenta, F., Palma, E., Marzocchi, U., Cruz Viggi, C., Rossetti, S. & Scoma, A. (2021). Enhanced Hydrocarbons Biodegradation at Deep-Sea Hydrostatic Pressure with Microbial Electrochemical Snorkels. Catalysts, 11(2), [263]. https://doi.org/10.3390/catal11020263

Veshareh, M. J., Kjeldsen, K. U., Findlay, A. J., Nick, H. M., Røy, H. & Marietou, A. (2021). Nitrite is a more efficient inhibitor of microbial sulfate reduction in oil reservoirs compared to nitrate and perchlorate: A laboratory and field-scale simulation study. International Biodeterioration and Biodegradation, 157, [105154]. https://doi.org/10.1016/j.ibiod.2020.105154

Kroutil, W., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber , B. & Schmermund, L. (2021). Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways. Angewandte Chemie, 60(13), 6965-6969. https://doi.org/10.1002/anie.202100164

Schmermund, L., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber, B. & Kroutil, W. (2021). Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis. ChemRxiv. file:///C:/Users/Mogens/Downloads/PhotoCat-switching_product_ChemRxiv.pdf

Eser, B. E., Zhang, Y., Zong, L. & Guo, Z. (2021). Self-sufficient Cytochrome P450s and Their Potential Applications in Biotechnology. Chinese Journal of Chemical Engineering, 30, 121-135. https://doi.org/10.1016/j.cjche.2020.12.002

Zong, L., Gao, R., Guo, Z., Shao, Z., Wang, Y. & Eser, B. E. (2021). Characterization and modification of two self-sufficient CYP102 family enzymes from Bacillus amyloliquefaciens DSM 7 with distinct regioselectivity towards fatty acid hydroxylation. Biochemical Engineering Journal, 166, [107871]. https://doi.org/10.1016/j.bej.2020.107871

Lin, S., Liu, H., Svenningsen, E. B., Wollesen, M., Jacobsen, K. M., Andersen, F. D., Moyano-Villameriel, J., Pedersen, C. N., Nørby, P., Tørring, T. & Poulsen, T. B. (2021). Expanding the antibacterial selectivity of polyether ionophore antibiotics through diversity-focused semisynthesis. Nature Chemistry, 13(1), 47-55. https://doi.org/10.1038/s41557-020-00601-1

Dai, R., Eser, B. E. & Guo, Z. (2021). Beyond flower-like structure – The synergy within Pd/Ni-Al hydrotalcite for base-free oxidation of benzyl alcohols. Applied Catalysis A: General, 610, [117972]. https://doi.org/10.1016/j.apcata.2020.117972

Cheng, W., Liu, G., Guo, Z., Chen, F. & Cheng, K-W. (2020). Kinetic Study and Degradation Mechanism of Glycidyl Esters in both Palm Oil and Chemical Models during High-Temperature Heating. Journal of Agricultural and Food Chemistry, 68(51), 15319–15326. https://doi.org/10.1021/acs.jafc.0c05515

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Revideret 12.01.2022 -