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Institut for Bio- og Kemiteknologi

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Bai, L., Jiang, Y., Xia, D., Wei, Z., Spinney, R., Dionysiou, D. D., Minakata, D., Xiao, R., Xie, H. B. & Chai, L. (2022). Mechanistic Understanding of Superoxide Radical-Mediated Degradation of Perfluorocarboxylic Acids. Environmental Science and Technology, 56(1), 624-633. https://doi.org/10.1021/acs.est.1c06356

de Jonge, N., Poulsen, J. S., Vechi, N. T., Kofoed, M. V. W. & Nielsen, J. L. (2022). Wood-Ljungdahl pathway utilisation during in situ H₂ biomethanation. Science of the total Environment, 806(Part 3), [151254]. https://doi.org/10.1016/j.scitotenv.2021.151254

Romio, C., Vedel Wegener Kofoed, M. & Bjarne Møller, H. (2022). Effect of ultrasonic and electrokinetic post-treatments on methane yield and viscosity of agricultural digestate. Bioresource Technology, 358, [127388]. https://doi.org/10.1016/j.biortech.2022.127388

Neuzil-Bunesova, V., Ramirez Garcia, A., Modrackova, N., Makovska, M., Sabolova, M., Spröer, C., Bunk, B., Blom, J. & Schwab, C. (2022). Feed Insects as a Reservoir of Granadaene-Producing Lactococci. Frontiers in Microbiology, 13, [848490]. https://doi.org/10.3389/fmicb.2022.848490

Xiao, R., Fu, Y., Bai, L., Chu, C., Ma, J., Wei, Z., Spinney, R., Dionysiou, D. D. & Pu, J. (2022). Kinetics and mechanistic aspects of superoxide radical-mediated transformation of ascorbate. Journal of Environmental Chemical Engineering, 10(3), [107736]. https://doi.org/10.1016/j.jece.2022.107736

Bai, L., Jiang, Y., Xia, D., Wei, Z., Spinney, R., Dionysiou, D. D., Minakata, D., Xiao, R., Xie, H. B. & Chai, L. (2022). Response to Comment on "mechanistic Understanding of Superoxide Radical-Mediated Degradation of Perfluorocarboxylic Acids". Environmental Science and Technology, 56(8), 5289-5291. https://doi.org/10.1021/acs.est.2c01335

Bai, L., He, L., Fu, Y., Chu, C., Wei, Z., Spinney, R., Dionysiou, D. D., Liang, Y. & Xiao, R. (2022). New insight to superoxide radical-mediated degradation of pentachlorophenate: Kinetic determination and theoretical calculations. Chemical Communications, 58(16), 2666-2669. https://doi.org/10.1039/d1cc06834b

Lyu, J., Zhang, J., Zhu, J., Chen, S., Han, T., Zhang, Y., Gao, R., Xie, G. & Guo, Z. (2022). Molecular dynamics simulation guided distal mutation of Thermotoga naphthophila β-glucosidase for significantly enhanced synthesis of galactooligosaccharides and expanded product scope. International Journal of Biological Macromolecules, 210, 21-32. https://doi.org/10.1016/j.ijbiomac.2022.05.002

Huang, Z., Guo, S., Guo, Z., He, Y. & Chen, B. (2022). Integrated green one-step strategy for concurrent recovery of phycobiliproteins and polyunsaturated fatty acids from wet Porphyridium biomass. Food Chemistry, 389, [133103]. https://doi.org/10.1016/j.foodchem.2022.133103

Milic, M., Byström, E., Domínguez de María, P. & Kara, S. (2022). Enzymatic Cascade for the Synthesis of 2,5-Furandicarboxylic Acid in Biphasic and Microaqueous Conditions: ‘Media-Agnostic’ Biocatalysts for Biorefineries. ChemSusChem, 15(9), [e202102704]. https://doi.org/10.1002/cssc.202102704

Tang, T., Li, Q., Huang, Z., Wu, Y., Yan, B., Zhao, J., Zhang, H., Chen, W. & Fan, D. (2022). Evaluation of Shandong pancake with sourdough fermentation on the alleviation of type 2 diabetes symptoms in mice. Journal of Functional Foods, 90, [104952]. https://doi.org/10.1016/j.jff.2022.104952

Rodriguez, J. M. O., Wacklin-Knecht, H. P., Clifton, L. A., Bogojevic, O., Leung, A., Fragneto, G. & Knecht, W. (2022). New Insights into the Interaction of Class II Dihydroorotate Dehydrogenases with Ubiquinone in Lipid Bilayers as a Function of Lipid Composition. International Journal of Molecular Sciences , 23(5), [2437]. https://doi.org/10.3390/ijms23052437

Liu, G., Bogojevic, O., Pedersen, J. N. & Guo, Z. (2022). Edible oleogels as solid fat alternatives: Composition and oleogelation mechanism implications. Comprehensive Reviews in Food Science and Food Safety, 21(3), 2077-2104. https://doi.org/10.1111/1541-4337.12928

Xie, D., Ji, X., Dai, Y., He, Y., Sun, H., Guo, Z., Yang, Y., Zheng, X. & Chen, B. (2022). Chlorella vulgaris cultivation in pilot-scale to treat real swine wastewater and mitigate carbon dioxide for sustainable biodiesel production by direct enzymatic transesterification. Bioresource Technology, 349, [126886]. https://doi.org/10.1016/j.biortech.2022.126886

Ng, K-S., Chang, Y-C., Chen, Y-P., Lo, Y-H., Wang, S-Y. & Chen, M-J. (2022). Characterization of exopolysaccharide-producing lactic acid bacteria from Taiwanese ropy fermented milk and their application in low-fat fermented milk. Animal Bioscience, 35(2), 281-289. https://doi.org/10.5713/ab.21.0251

Wang, S-Y., Huang, R-F., Ng, K-S., Chen, Y-P., Shiu, J-S. & Chen, M-J. (2021). Co-Culture Strategy of Lactobacillus kefiranofaciens HL1 for Developing Functional Fermented Milk. Foods, 10(9), 2098. https://doi.org/10.3390/foods10092098

Khider, M. L. K., Brautaset, T. & Irla, M. (2021). Methane monooxygenases: central enzymes in methanotrophy with promising biotechnological applications. World Journal of Microbiology and Biotechnology, 37(4), [72]. https://doi.org/10.1007/s11274-021-03038-x

Irla, M., Hakvåg, S. & Brautaset, T. (2021). Developing a riboswitch-mediated regulatory system for metabolic flux control in thermophilic bacillus methanolicus. International Journal of Molecular Sciences , 22(9), [4686]. https://doi.org/10.3390/ijms22094686

Brito, L. F., Irla, M., Nærdal, I., Le, S. B., Delépine, B., Heux, S. & Brautaset, T. (2021). Evaluation of Heterologous Biosynthetic Pathways for Methanol-Based 5-Aminovalerate Production by Thermophilic Bacillus methanolicus. Frontiers in Bioengineering and Biotechnology, 9, [686319]. https://doi.org/10.3389/fbioe.2021.686319

Gruenberg, M., Irla, M., Myllek, S. & Draths, K. (2021). Characterization of two 3-deoxy-D-Arabino-Heptulosonate 7-phosphate synthases from Bacillus methanolicus. Protein Expression and Purification, 188, [105972]. https://doi.org/10.1016/j.pep.2021.105972

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), [e202101625]. https://doi.org/10.1002/cctc.202101625

Meyer, J., Meyer, L-E. & Kara, S. (2022). Enzyme immobilization in hydrogels: A perfect liaison for efficient and sustainable biocatalysis. Engineering in Life Sciences, 22(3-4), 165-177. https://doi.org/10.1002/elsc.202100087

Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), [e202100606]. https://doi.org/10.1002/cbic.202100606

Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, [780092]. https://doi.org/10.3389/fmicb.2021.780092

Bittner, J. P., Zhang, N., Huang, L., Domínguez de María, P., Jakobtorweihen, S. & Kara, S. (2022). Impact of deep eutectic solvents (DESs) and individual DES components on alcohol dehydrogenase catalysis: Connecting experimental data and molecular dynamics simulations. Green Chemistry, 24(3), 1120-1131. https://doi.org/10.1039/D1GC04059F

Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H₂ conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, [100876]. https://doi.org/10.1016/j.biteb.2021.100876

Alvarez, M. V., Bambace, M. F. & del Rosario Moreira, M. (2019). Arándanos como alternativa no láctea en alimentos funcionales. Editorial Académica Española. EAE. https://www.eae-publishing.com/catalog/details/store/gb/book/978-620-0-33162-5/ar%C3%A1ndanos-como-alternativa-no-l%C3%A1ctea-en-alimentos-funcionales

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2021). Ready-to-eat blueberries as fruit-based alternative to deliver probiotic microorganisms and prebiotic compounds. LWT, 142, [111009]. https://doi.org/10.1016/j.lwt.2021.111009

Bambace, M. F., del Rosario Moreira, M., Sánchez-Moreno, C. & De Ancos, B. (2021). Effects of combined application of high-pressure processing and active coatings on phenolic compounds and microbiological and physicochemical quality of apple cubes. Journal of the Science of Food and Agriculture, 101(10), 4256-4265. https://doi.org/10.1002/jsfa.11065

Alvarez, M. V., Bambace, M. F., Quintana, G., Gomez-Zavaglia, A. & del Rosario Moreira, M. (2021). Prebiotic-alginate edible coating on fresh-cut apple as a new carrier for probiotic lactobacilli and bifidobacteria. LWT, 137, [110483]. https://doi.org/10.1016/j.lwt.2020.110483

Bambace, M. F., Alvarez, M. V. & del Rosario Moreira, M. (2019). Novel functional blueberries: Fructo-oligosaccharides and probiotic lactobacilli incorporated into alginate edible coatings. Food Research International, 122, 653-660. https://doi.org/10.1016/j.foodres.2019.01.040

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2019). Prebiotic edible coatings with biopreservatives: Quality and safety of fresh apple cubes. Journal of Food Process Engineering, 42(2), [e12971]. https://doi.org/10.1111/jfpe.12971

Bambace, M. F., Gerard, L. M. & del Rosario Moreira, M. (2018). An approach to improve the safety and quality of ready-to-eat blueberries. Journal of Food Safety, 39(2). https://doi.org/10.1111/jfs.12602

Sonnenberg-Riethmacher, E., Miehe, M. & Riethmacher, D. (2021). Periostin in Allergy and Inflammation. Frontiers in Immunology, 12, [722170]. https://doi.org/10.3389/fimmu.2021.722170

Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), [106390]. https://doi.org/10.1016/j.jece.2021.106390

Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), [9295]. https://doi.org/10.3390/su13169295

Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in applied microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004

Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. https://doi.org/10.1038/s41396-021-01061-2

Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, [117528]. https://doi.org/10.1016/j.watres.2021.117528

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, [126860]. https://doi.org/10.1016/j.jhazmat.2021.126860

Hobisch, M. (2021). Medium and Reaction Engineering of Light-driven Biotransformations. Aarhus Universitet.

Liang, N., Neužil-Bunešová, V., Tejnecký, V., Gänzle, M. & Schwab, C. (2021). 3-Hydroxypropionic acid contributes to the antibacterial activity of glycerol metabolism by the food microbe Limosilactobacillus reuteri. Food Microbiology, 98, [103720]. https://doi.org/10.1016/j.fm.2020.103720

Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K. (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. International Journal of Systematic and Evolutionary Microbiology, 71(3), [004673]. https://doi.org/10.1099/ijsem.0.004673

Zhang, Z., Cui, L., Zhang, Y., Klausen, L. H., Chen, M., Sun, D., Xu, S., Kang, S. & Shi, J. (2021). Regulation of carboxyl groups and structural defects of graphitic carbon nitride via environmental-friendly glucose oxidase ring-opening modulation. Applied Catalysis B: Environmental, 297, [120441]. https://doi.org/10.1016/j.apcatb.2021.120441

Jensen, M. B., Poulsen, S., Jensen, B. N., Feilberg, A. & Kofoed, M. V. W. (2021). Selecting carrier material for efficient biomethanation of industrial biogas-CO₂ in a trickle-bed reactor. Journal of CO2 Utilization, 51, [101611]. https://doi.org/10.1016/j.jcou.2021.101611

Bittner, J. P., Huang, L., Zhang, N., Kara, S. & Jakobtorweihen, S. (2021). Comparison and Validation of Force Fields for Deep Eutectic Solvents in Combination with Water and Alcohol Dehydrogenase. Journal of Chemical Theory and Computation, 17(8), 5322-5341. https://doi.org/10.1021/acs.jctc.1c00274

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C. & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Hobisch, M., Spasic, J., Malihan-Yap, L., Barone, G. D., Castiglione, K., Tamagnini, P., Kara, S. & Kourist, R. (2021). Internal Illumination to Overcome the Cell Density Limitation in the Scale-up of Whole-cell Photobiocatalysis. ChemSusChem, 14(15), 3219-3225. https://doi.org/10.1002/cssc.202100832

Zhang, N., Steininger, F., Meyer, L-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. https://doi.org/10.1021/acssuschemeng.1c03547

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Revideret 21.02.2022 -