Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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E. Miller, K., Lai, C.-T., S. Friedman, E., Angenent, L. & Lipson, D. A. (2015). Methane suppression by iron and humic acids in soils of the Arctic Coastal Plain. Soil Biology and Biochemistry, 83, 176-183. https://doi.org/10.1016/j.soilbio.2015.01.022

del Agua, I., G. Usack, J. & Angenent, L. (2015). Comparison of semi-batch vs. continuously fed anaerobic bioreactors for the treatment of a high-strength, solids-rich pumpkin processing wastewater. Environmental Technology, 36(15), 1974-1983. https://doi.org/10.1080/09593330.2015.1018842

Gavazza, S., Guzman, J. J. L. & Angenent, L. (2015). Electrolysis within anaerobic bioreactors stimulates breakdown of toxic products from azo dye treatment. Biodegradation, 26(2), 151–160. https://doi.org/10.1007/s10532-015-9723-8

Domínguez de María, P., Kara, S. & Gallou, F. (2023). Biocatalysis in Water or in Non-Conventional Media? Adding the CO2 Production for the Debate. Molecules, 28(18), Article 6452. https://doi.org/10.3390/molecules28186452

Huertas-Díaz, L., Kyhnau, R., Ingribelli, E., Neuzil-Bunesova, V., Li, Q., Sasaki, M., Lauener, R. P., Roduit, C., Frei, R., CK-CARE study group, Sundekilde, U. & Schwab, C. (2023). Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces. Gut Microbes, 15(1), Article 2241209. https://doi.org/10.1080/19490976.2023.2241209

Pourjafar, M., Saidijam, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2023). Surfaceome Profiling Suggests Potential of Anti-MUC1×EGFR Bispecific Antibody for Breast Cancer Targeted Therapy. Journal of Immunotherapy, 46(7), 245-261. https://doi.org/10.1097/CJI.0000000000000482

Molitor, B., Marcellin, E. & Angenent, L. (2017). Overcoming the energetic limitations of syngas fermentation. Current Opinion in Chemical Biology, 41, 84-92. https://doi.org/10.1016/j.cbpa.2017.10.003

M. Spirito , C., E. Daly, S., J. Werner, J. & Angenent, L. (2018). Redundancy of anaerobic digestion microbiomes during disturbances by the antibiotic monensin. Applied and Environmental Microbiology, 84(9). https://doi.org/10.1128/AEM.02692-17

Gylling, M., Nord-Larsen, T., Bruhn, A., Thomsen, M., Ambye-Jensen, M., Mortensen, E. Ø. & Jørgensen, U. (2023). Potential Danish biomass production and utilization in 2030. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA Report No. 219 https://dcapub.au.dk/djfpublikation/djfpdf/DCArapport219.pdf

Tesson, S. V. M., Barbato, M. & Rosati, B. (2023). Aerosolization flux, bio-products, and dispersal capacities in the freshwater microalga Limnomonas gaiensis (Chlorophyceae). Communications Biology, 6(1), Article 809. https://doi.org/10.1038/s42003-023-05183-5

Vaupel, S., Mau, R., Kara, S., Seitz, H., Kragl, U. & Meyer, J. (2023). 3D printed and stimulus responsive drug delivery systems based on synthetic polyelectrolyte hydrogels manufactured via digital light processing. Journal of Materials Chemistry B, 28(11), 6547-6559. https://doi.org/10.1039/D3TB00285C

De Santis, P., Wegstein, D., O. Burek, B., Patzsch, J., Alcalde, M., Kroutil, W., Z. Bloh, J. & Kara, S. (2023). Robust Light Driven Enzymatic Oxyfunctionalization Via Immobilization of Unspecific Peroxygenase. ChemSusChem, 16(23), Article e202300613. https://doi.org/10.1002/cssc.202300613

Röllig, R., Paul, C. E., Rousselot-Pailley, P., Kara, S. & Alphand, V. (2023). Hybrid catalysis for enantioselective Baeyer-Villiger oxidation and stereoselective epoxidation: A Cp*Ir complex to fuel FMN and FAD reduction for flavoprotein monooxygenase modules. Reaction Chemistry & Engineering , 8(12), 3117-3123. https://doi.org/10.1039/d3re00411b

Jopp, S., Fleischhammer, T., Lavrentieva, A., Kara, S. & Meyer, J. (2023). Synthesis, biocompatibility, and antimicrobial properties of glucose-based ionic liquids. RSC Sustainability, 1(7), 1751-1764. https://doi.org/10.1039/d3su00191a

Nguyen, M., C. Holmes, E. & Angenent, L. (2021). The short-term effect of residential home energy retrofits on indoor air quality and microbial exposure: a case-control study. PLoS One, 16(9 September), Article e0230700. https://doi.org/10.1371/journal.pone.0230700

Magdalena, J. A., Angenent, L. & G. Usack, J. (2022). The measurement, application, and effect of oxygen in microbial fermentations: Focusing on methane and carboxylate production. Fermentation , 8(4), Article 138. https://doi.org/10.3390/fermentation8040138

Klask, C.-M., Jäger, B., Casini, I., Angenent, L. & Molitor, B. (2022). Genetic Evidence Reveals the Indispensable Role of the rseC Gene for Autotrophy and the Importance of a Functional Electron Balance for Nitrate Reduction in Clostridium ljungdahlii. Frontiers in Microbiology, 13, Article 887578. https://doi.org/10.3389/fmicb.2022.887578

Marcellin, E., Angenent, L., K. Nielsen, L. & Molitor, B. (2022). Recycling carbon for sustainable protein production using gas fermentation. Current Opinion in Biotechnology, 76, Article 102723. https://doi.org/10.1016/j.copbio.2022.102723

Palomo-Briones, R., Xu, J., M. Spirito , C., G. Usack, J., H. Trondsen, L., Guzman, J. J. L. & Angenent, L. (2022). Near-neutral pH increased n-caprylate production in a microbiome with product inhibition of methanogenesis. Chemical Engineering Journal, 446(Part 3), Article 137170. https://doi.org/10.1016/j.cej.2022.137170

P. Shaffer, J., Nothias, L.-F., R. Thompson, L., G. Sanders, J., A. Salido, R., P. Couvillion, S., Brejnrod, A. D., Lejzerowicz, F., Haiminen, N., Huang, S., L. Lutz, H., Zhu, Q., Martino, C., T. Morton, J., Karthikeyan, S., Nothias-Esposito, M., Dührkop, K., Böcker, S., Kim, H. W. ... The Earth Microbiome Project 500 (EMP500) Consortium (2022). Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity. Nature Microbiology, 7(12), 2128–2150. https://doi.org/10.1038/s41564-022-01266-x

A. Labatut, R., Angenent, L. & Scott, N. R. (2022). Characterizing the influence of wastewater composition and lignin content on anaerobic biodegradability. Environmental Science: Water Research & Technology, 8(7), 1507-1520. https://doi.org/10.1039/D2EW00077F

P. B. T. B. Strik, D., Ganigue, R. & Angenent, L. (2022). Editorial: Microbial chain elongation-close the carbon loop by connecting communities. Frontiers in Bioengineering and Biotechnology, 10, Article 894490. https://doi.org/10.3389/fbioe.2022.894490

Molitor, B., Casini, I., Fink, C., Hafenbradl, D. & Angenent, L. (2023). Power-to-Gas: neuer Rückenwind für ein altes Modellsystem. BioSpektrum, 29(1), 94–96. https://doi.org/10.1007/s12268-023-1880-4

Fink, C., Martinez-Cano, G., Shuster, J., Panzera, A., E. Rennhack, K., Rohbohm, N., Angenent, L. & Molitor, B. (2023). The Targeted Deletion of Genes Responsible for Expression of the Mth60 Fimbriae Leads to Loss of Cell-Cell Connections in Methanothermobacter thermautotrophicus ΔH. Applied and Environmental Microbiology, 89(7), Article e0057523. https://doi.org/10.1128/aem.00575-23

E. Ortiz-Ardila, A., D. Restrepo, J., Angenent, L., G. Usac, J. & A. Labatut, R. (2024). Protecting human health and the environment against siloxanes: the role and effectiveness of wastewater treatment technologies. Critical Reviews in Environmental Science and Technology, 54(1), 68-94. https://doi.org/10.1080/10643389.2023.2221156

Rohbohm, N., Sun, T., Blasco-Gómez, R., Byrne, J. M., Kappler, A. & Angenent, L. (2023). Carbon oxidation with sacrificial anodes to inhibit O2 evolution in membrane-less bioelectrochemical systems for microbial electrosynthesis. EES Catalysis, 1(6), 972-986. https://doi.org/10.1039/d3ey00141e

Zong, L., Zhang, Y., Shao, Z., Ljubic, A., Jacobsen, C., Gao, R., Eser, B. E., Wang, Y., Wang, Y. & Guo, Z. (2023). Selective and Sustainable Production of Sub-terminal Hydroxy Fatty Acids by a Self-Sufficient CYP102 Enzyme from Bacillus Amyloliquefaciens. ChemBioChem, 24(18), Article e202300368. https://doi.org/10.1002/cbic.202300368

Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y.-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W., Andersen, G. R. & Guo, Z. (2023). Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation. Journal of Hazardous Materials, 458, Article 131986. https://doi.org/10.1016/j.jhazmat.2023.131986

Sieborg, M. U., Ottosen, L. D. M. & Kofoed, M. V. W. (2023). Enhanced process control of trickle-bed reactors for biomethanation by vertical profiling directed by hydrogen microsensor monitoring. Bioresource Technology, 384, Article 129242. https://doi.org/10.1016/j.biortech.2023.129242

Ye, S., Cheng, Y., Guo, Z., Wang, X. & Wei , W. (2023). A Lipid Toolbox of Sugar Alcohol Fatty Acid Monoesters for Single-component Lipid Nanoparticles with Temperature-controlled Release. Colloids and Surfaces B: Biointerfaces, 228, Article 113426. https://doi.org/10.1016/j.colsurfb.2023.113426

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology Spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Bogojevic, O., Zhang, Y., Wolff, C. D., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2023). A sustainable and regioselective synthesis of Hemi-bis(monoacylglycero)phosphates and bis(diacylglycero)phosphates. iScience, 26(7), Article 107075. https://doi.org/10.1016/j.isci.2023.107075

Ng, K. S., Bambace, M. F. & Schwab, C. (2023). Microbially-produced short chain carboxylic acids are ancient food biopreservatives with complex mode of action. Current Opinion in Food Science, 52, Article 101066. https://doi.org/10.1016/j.cofs.2023.101066

Ambye-Jensen, M., (2022). Arealanvendelse og bioøkonomi. Synergier og systemgevinster ved ændret arealanvendelse og bioraffinering, No. 2022-0340167 / 2020-0114173, 34 p., Feb 11, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Gaffey, J., Rajauria, G., McMahon, H., Ravindran, R., Dominguez, C., Ambye-Jensen, M., Souza, M. F., Meers, E., Aragonés, M. M., Skunca, D. & Sanders, J. P. M. (2023). Green Biorefinery systems for the production of climate-smart sustainable products from grasses, legumes and green crop residues. Biotechnology Advances, 66, Article 108168. https://doi.org/10.1016/j.biotechadv.2023.108168

Munoz Duarte, L. D. & Philips, J. (2023). No acetogen is equal: Strongly different H₂ thresholds reflect diverse bioenergetics in acetogenic bacteria. Environmental Microbiology, 25(10), 2032-2040. https://doi.org/10.1111/1462-2920.16429

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2023). Coupler les avantages des cultures herbagères et du bioraffinage vert pour produire des protéines, des matériaux et des services pour la transition écologique. Fourrages , 253, 47-60.

Feilberg, A., Ambrose, H. W., Dalby, F. R. & Kofoed, M. V. W. (2023). Residual slurry treatment combined with weekly discharge: Elimination of in-house methane emission in livestock facilities. Abstract from Agri Food and Climate Circle 2023, København, Denmark.

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Additives and methods for the mitigation of methane emission from stored liquid manure. Biosystems Engineering, 229, 209-245. https://doi.org/10.1016/j.biosystemseng.2023.03.015

Klein, V. J., Brito, L. F., Perez-Garcia, F., Brautaset, T. & Irla, M. (2023). Metabolic engineering of thermophilic Bacillus methanolicus for riboflavin overproduction from methanol. Microbial Biotechnology, 16(5), 1011-1026. https://doi.org/10.1111/1751-7915.14239

Alphand, V., van Berkel, W. J. H., Jurkas, V., Kara, S., Kourist, R., Kroutil, W., Mascia, F., M. Nowaczyk, M., Paul, C. E., Schmidt, S., Spasic, J., Tamagnini, P. & Winkler, C. K. (2023). Exciting Enzymes: Current State and Future Perspective of Photobiocatalysis. ChemPhotoChem, 7(7), Article e202200325. https://doi.org/10.1002/cptc.202200325

Gao, P., Zhang, X., Huang, X., Chen, Z., Marietou, A., Holmkvist, L., Qu, L., Finster, K. & Gong, X. (2023). Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. BMC Genomics, 24(1), Article 209. https://doi.org/10.1186/s12864-023-09297-2

Semproli, R., Chanquia, S. N., Bittner, J. P., Müller, S., Domínguez de María, P., Kara, S. & Ubiali, D. (2023). Deep Eutectic Solvents for the Enzymatic Synthesis of Sugar Esters: A Generalizable Strategy? ACS Sustainable Chemistry & Engineering, 11(15), 5926-5936. https://doi.org/10.1021/acssuschemeng.2c07607

Meyer, L.-E., Horvath, D., Vaupel, S., Meyer, J., Alcalde, M. & Kara, S. (2023). A 3D printable synthetic hydrogel as an immobilization matrix for continuous synthesis with fungal peroxygenases. Reaction Chemistry & Engineering , 8(5), 984-988. https://doi.org/10.1039/d3re00058c

Svenningsen, E. B., Ottosen, R. N., Jørgensen, K. H., Nisavic, M., Larsen, C. K., Hansen, B. K., Wang, Y., Lindorff-Larsen, K., Tørring, T., Hacker, S. M., Palmfeldt, J. & Poulsen, T. B. (2022). The covalent reactivity of functionalized 5-hydroxy-butyrolactams is the basis for targeting of fatty acid binding protein 5 (FABP5) by the neurotrophic agent MT-21. RSC Chemical Biology, 3(10), 1216-1229. https://doi.org/10.1039/d2cb00161f

Schulz, S., Molitor, B. & Angenent, L. T. (2023). Acetate augmentation boosts the ethanol production rate and specificity by Clostridium ljungdahlii during gas fermentation with pure carbon monoxide. Bioresource Technology, 369, Article 128387. https://doi.org/10.1016/j.biortech.2022.128387

Li, Z., Zhang, G., Charalampopoulos, D. & Guo, Z. (2023). Ionic liquid-mediated regeneration of cellulose dramatically improves decrystallization, TEMPO-mediated oxidation and alkyl/alkenyl succinylation. International Journal of Biological Macromolecules, 236, Article 123983. https://doi.org/10.1016/j.ijbiomac.2023.123983

Xiong, X., Shang, Y., Bai, L., Luo, S., Seviour, T. W., Guo, Z., Ottosen, L. D. M. & Wei, Z. (2023). Complete Defluorination of Perfluorooctanoic Acid (PFOA) by Ultrasonic Pyrolysis Towards Zero Fluoro-Pollution. Water Research, 235, Article 119829. https://doi.org/10.1016/j.watres.2023.119829

Santner, P., Chanquia, S. N., Petrovai, N., Vig Benfeldt, F., Kara, S. & Eser, B. E. (2023). Biocatalytic Conversion of Fatty Acids into Drop-in Biofuels: Towards Sustainable Energy Sources. EFB Bioeconomy Journal, 3, Article 100049. https://doi.org/10.1016/j.bioeco.2023.100049

Milic, M., Domínguez de María, P. & Kara, S. (2023). A patent survey on the biotechnological production of 2,5-furandicarboxylic acid (FDCA): Current trends and challenges. EFB Bioeconomy Journal, 3, Article 100050. https://doi.org/10.1016/j.bioeco.2023.100050

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