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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Article 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

Hobisch, M. & Kara, S. (2021). Automated Feeding and Fermentation Phase Transitions for the Production of Unspecific Peroxygenase by Pichia pastoris. bioRxiv. https://doi.org/10.1101/2021.07.29.454275

Jørgensen, U., Kristensen, T., Jørgensen, J. R., Kongsted, A. G., De Notaris, C., Nielsen, C., Mortensen, E. Ø., Ambye-Jensen, M., Jensen, S. K., Stødkilde-Jørgensen, L., Dalsgaard, T. K., Møller, A. H., Grøn Sørensen, C., Asp, T., Lehmann Olsen, F. & Gylling, M. (2021). Green biorefining of grassland biomass. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 193 https://dcapub.au.dk/djfpublikation/index.asp?action=show&id=1480

Liang, N., Neužil-Bunešová, V., Tejnecký, V., Gänzle, M. & Schwab, C. (2021). 3-Hydroxypropionic acid contributes to the antibacterial activity of glycerol metabolism by the food microbe Limosilactobacillus reuteri. Food Microbiology, 98, Article 103720. https://doi.org/10.1016/j.fm.2020.103720

Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K. (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. International Journal of Systematic and Evolutionary Microbiology, 71(3), Article 004673. https://doi.org/10.1099/ijsem.0.004673

Andrade, T. A., Errico, M. & Christensen, K. V. (2020). Implementation of Biodiesel Production Process Using Enzyme-Catalyzed Routes. In A. Bonilla-Petriciolet & G. P. Rangaiah (Eds.), Process Systems Engineering for Biofuels Development (pp. 191-220). Wiley. https://doi.org/10.1002/9781119582694.ch8

Andrade, T. A., Hamerski, F., López Fetzer, D. E., Roda-Serrat, M. C., Corazza, M. L., Norddahl, B. & Errico, M. (2021). Ultrasound-assisted pressurized liquid extraction of anthocyanins from Aronia melanocarpa pomace. Separation and Purification Technology, 276, Article 119290. https://doi.org/10.1016/j.seppur.2021.119290

Jensen, M. B., Poulsen, S., Jensen, B., Feilberg, A. & Kofoed, M. V. W. (2021). Selecting carrier material for efficient biomethanation of industrial biogas-CO₂ in a trickle-bed reactor. Journal of CO2 Utilization, 51, Article 101611. https://doi.org/10.1016/j.jcou.2021.101611

Bittner, J. P., Huang, L., Zhang, N., Kara, S. & Jakobtorweihen, S. (2021). Comparison and Validation of Force Fields for Deep Eutectic Solvents in Combination with Water and Alcohol Dehydrogenase. Journal of Chemical Theory and Computation, 17(8), 5322-5341. https://doi.org/10.1021/acs.jctc.1c00274

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C. & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Stenderup, K. & Overby, S. S. (2021). Oral Group Examination Method to Evaluate Collaborative and Individual Learning. In J. Bennedsen, K. Edström, M. S. Gudjonsdottir, I. Sæmundsdóttir, N. Kuptasthien, J. Roslöf & A. Sripakagorn (Eds.), The 17th International CDIO Conference: Proceedings - Full Papers (pp. 630-644) http://www.cdio2021.chula.ac.th/download/CDIO2021_proceeding.pdf

Hobisch, M., Spasic, J., Malihan-Yap, L., Barone, G. D., Castiglione, K., Tamagnini, P., Kara, S. & Kourist, R. (2021). Internal Illumination to Overcome the Cell Density Limitation in the Scale-up of Whole-cell Photobiocatalysis. ChemSusChem, 14(15), 3219-3225. https://doi.org/10.1002/cssc.202100832

Zhang, N., Steininger, F., Meyer, L.-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. https://doi.org/10.1021/acssuschemeng.1c03547

Petermeier, P., Fortuna, C., M. Hübschmann, K., Nahuel Bidart Costoya, G., Tørring, T., Teze, D., Welner, D. H. & Kara, S. (2021). Exploring the in Vitro Operating Window of Glycosyltransferase PtUGT1 from Polygonum tinctorium for a Biocatalytic Route to Indigo Dye. ACS Sustainable Chemistry & Engineering, 9(25), 8497-8506. https://doi.org/10.1021/acssuschemeng.1c01536

Aryal, N., Ottosen, L. D. M., Kofoed, M. V. W. & Pant, D. (Eds.) (2021). Emerging Technologies and Biological Systems for Biogas Upgrading. (1 ed.) Academic Press. https://www.elsevier.com/books/emerging-technologies-and-biological-systems-for-biogas-upgrading/aryal/978-0-12-822808-1

Aryal, N., Ottosen, L. D. M., Bentien, A., Pant, D. & Kofoed, M. V. W. (2021). Bioelectrochemical systems for biogas upgrading and biomethane production. In N. Aryal, L. D. Mørck Ottosen, M. Vedel Wegener Kofoed & D. Pant (Eds.), Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 363-382). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00013-1

Zong, L., Zhang, Y., Shao, Z., Wang, Y., Guo, Z., Gao, R. & Eser, B. E. (2021). Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids. Catalysts, 11(6), Article 665. https://doi.org/10.3390/catal11060665

Jensen, M. B., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). H₂ gas-liquid mass transfer: A key element in biological Power-to-Gas methanation. Renewable & Sustainable Energy Reviews, 147, Article 111209. https://doi.org/10.1016/j.rser.2021.111209

Jensen, M. B., de Jonge, N., Dolriis, M. D., Kragelund, C., Holst Fischer, C., Eskesen, M., Noer, K. W., Møller, H. B., Ottosen, L. D. M., Nielsen, J. L. & Kofoed, M. V. W. (2021). Cellulolytic and Xylanolytic Microbial Communities Associated With Lignocellulose-Rich Wheat Straw Degradation in Anaerobic Digestion. Frontiers in Microbiology, 12, Article 645174. https://doi.org/10.3389/fmicb.2021.645174

Li, Z., Zhang, Y., Anankanbil, S. & Guo, Z. (2021). Applications of nanocellulosic products in food: Manufacturing processes, structural features and multifaceted functionalities. Trends in Food Science & Technology, 113, 277-300. https://doi.org/10.1016/j.tifs.2021.03.027

Stødkilde, L., Ambye-Jensen, M. & Jensen, S. K. (2021). Biorefined organic grass-clover protein concentrate for growing pigs: Effect on growth performance and meat fatty acid profile. Animal Feed Science and Technology, 276, Article 114943. https://doi.org/10.1016/j.anifeedsci.2021.114943

Kofoed, M. V. W., Jensen, M. B. & Ottosen, L. D. M. (2021). Biological upgrading of biogas through CO2 conversion to CH4. In Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 321-362). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00012-X

Meyer, L.-E., Eser, B. E. & Kara, S. (2021). Coupling light with biocatalysis for sustainable synthesis – very recent developments and future perspectives. Current Opinion in Green and Sustainable Chemistry, 31, Article 100496. https://doi.org/10.1016/j.cogsc.2021.100496

Röllig, R., Paul, C. E., Claeys-Bruno, M., Duquesne, K., Kara, S. & Alphand, V. (2021). Divorce in the two-component BVMO family: the single oxygenase for enantioselective chemo-enzymatic Baeyer–Villiger oxidations. Organic & Biomolecular Chemistry, 19(15), 3441-3450. https://doi.org/10.1039/D1OB00015B

Zhang, Y., Eser, B. E. & Guo, Z. (2021). A bi‐enzymatic cascade pathway towards optically pure FAHFAs. ChemBioChem, 22(12), 2146-2153. https://doi.org/10.1002/cbic.202100070

Zhang, Y., Eser, B. E., Kougioumtzoglou, G., Eser, Z., Poborsky, M., Kishino, S., Takeuchi, M., Ogawa, J., Kristensen, P. & Guo, Z. (2021). Effects of the engineering of a single binding pocket residue on specificity and regioselectivity of hydratases from Lactobacillus Acidophilus. Biochemical Engineering Journal, 171, Article 108006. https://doi.org/10.1016/j.bej.2021.108006

Lyu, J., Gao, R. & Guo, Z. (2021). Galactosyldiacylglycerols: From a Photosynthesis-Associated Apparatus to Structure-Defined In Vitro Assembling. Journal of Agricultural and Food Chemistry, 69(32), 8910–8928. https://doi.org/10.1021/acs.jafc.1c00204

Kara, S. & Rudroff, F. (2021). Perspectives: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 179-181). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (2021). Introduction: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 1-6). Springer. https://doi.org/10.1007/978-3-030-65718-5

Petermeier, P. & Kara, S. (2021). Enzyme Cascade Reaction Engineering. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 109-124). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (Eds.) (2021). Enzyme Cascade Design and Modelling. Springer. https://doi.org/10.1007/978-3-030-65718-5

Dos Reis Vechi, N., Agnessens, L. M., Feilberg, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). In situ biomethanation: Inoculum origin influences acetate consumption rate during hydrogen addition. Bioresource Technology Reports, 14, Article 100656. https://doi.org/10.1016/j.biteb.2021.100656

Andrade, T. A., Al-Kabalawi, I. F., Errico, M. & Christensen, K. V. (2018). Evaluation of the optimal reaction conditions for the methanolysis and ethanolysis of castor oil catalyzed by immobilized enzymes. European Biomass Conference and Exhibition Proceedings, 2018(26thEUBCE), 1044-1050.

Andrade, T. A., Martín, M., Errico, M. & Christensen, K. V. (2019). Biodiesel production catalyzed by liquid and immobilized enzymes: Optimization and economic analysis. Chemical Engineering Research and Design, 141, 1-14. https://doi.org/10.1016/j.cherd.2018.10.026

Andrade, T. A., Errico, M. & Christensen, K. V. (2019). Investigation of the use of ceramic membranes in recovering liquid enzymes for castor oil transesterification. Chemical Engineering Transactions, 74, 769-774. https://doi.org/10.3303/CET1974129

Sousa, A. M., Andrade, T. A., Errico, M., Coelho, J. P., Filipe, R. M. & Matos, H. A. (2019). Fatty Acid Content in Biomasses: State-of-the-Art and Novel Physical Property Estimation Methods. International Journal of Chemical Engineering, 2019, Article 2430234. https://doi.org/10.1155/2019/2430234

Roda-Serrat, M. C., Andrade, T. A. & Errico, M. (2019). Optimization of the Anthocyanins extraction process from Aronia berries pomace. Bulgarian Chemical Communications, 51, 106-107. https://doi.org/10.34049/bcc.51.B.020

Roda-Serrat, M. C., Andrade, T. A., Rindom, J., Lund, P. B., Norddahl, B. & Errico, M. (2021). Optimization of the Recovery of Anthocyanins from Chokeberry Juice Pomace by Homogenization in Acidified Water. Waste and Biomass Valorization, 12(4), 1815-1827. https://doi.org/10.1007/s12649-020-01127-w

Veshareh, M. J., Kjeldsen, K. U., Findlay, A. J., Nick, H. M., Røy, H. & Marietou, A. (2021). Nitrite is a more efficient inhibitor of microbial sulfate reduction in oil reservoirs compared to nitrate and perchlorate: A laboratory and field-scale simulation study. International Biodeterioration and Biodegradation, 157, Article 105154. https://doi.org/10.1016/j.ibiod.2020.105154

Kroutil, W., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber , B. & Schmermund, L. (2021). Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways. Angewandte Chemie, 60(13), 6965-6969. https://doi.org/10.1002/anie.202100164

Marsol-Vall, A., Aitta, E., Guo, Z. & Yang, B. (2022). Green technologies for production of oils rich in n-3 polyunsaturated fatty acids from aquatic sources. Critical Reviews in Food Science and Nutrition, 62(11), 2942-2962. https://doi.org/10.1080/10408398.2020.1861426

Schmermund, L., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber, B. & Kroutil, W. (2021). Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis. ChemRxiv. file:///C:/Users/Mogens/Downloads/PhotoCat-switching_product_ChemRxiv.pdf

Eser, B. E., Zhang, Y., Zong, L. & Guo, Z. (2021). Self-sufficient Cytochrome P450s and Their Potential Applications in Biotechnology. Chinese Journal of Chemical Engineering, 30, 121-135. https://doi.org/10.1016/j.cjche.2020.12.002

Zong, L., Gao, R., Guo, Z., Shao, Z., Wang, Y. & Eser, B. E. (2021). Characterization and modification of two self-sufficient CYP102 family enzymes from Bacillus amyloliquefaciens DSM 7 with distinct regioselectivity towards fatty acid hydroxylation. Biochemical Engineering Journal, 166, Article 107871. https://doi.org/10.1016/j.bej.2020.107871

Knudsen, M. T., Ambye-Jensen, M., Kristensen, T. & Eriksen, J. (2020). Carbon footprint of protein from organic multispecies mixtures processed in a biorefinery. Poster session presented at 12th International Conference on Life Cycle Assessment of Food 2020, Berlin, Germany.

Mountraki, A., Hsieh, C.-W. & Ambye-Jensen, M. (2020). Integrated Biorefineries: The case of AU green biorefinery. Abstract from Computer Aided Process Engineering Forum 2020, Lyngby, Denmark.

Lin, S., Liu, H., Svenningsen, E. B., Wollesen, M., Jacobsen, K. M., Andersen, F. D., Moyano-Villameriel, J., Pedersen, C. N., Nørby, P., Tørring, T. & Poulsen, T. B. (2021). Expanding the antibacterial selectivity of polyether ionophore antibiotics through diversity-focused semisynthesis. Nature Chemistry, 13(1), 47-55. https://doi.org/10.1038/s41557-020-00601-1

Dai, R., Eser, B. E. & Guo, Z. (2021). Beyond flower-like structure – The synergy within Pd/Ni-Al hydrotalcite for base-free oxidation of benzyl alcohols. Applied Catalysis A: General, 610, Article 117972. https://doi.org/10.1016/j.apcata.2020.117972

Cheng, W., Liu, G., Guo, Z., Chen, F. & Cheng, K.-W. (2020). Kinetic Study and Degradation Mechanism of Glycidyl Esters in both Palm Oil and Chemical Models during High-Temperature Heating. Journal of Agricultural and Food Chemistry, 68(51), 15319–15326. https://doi.org/10.1021/acs.jafc.0c05515

Feng, L., Ward, A. J., Ambye-Jensen, M. & Møller, H. B. (2021). Pilot-scale anaerobic digestion of by-product liquid (brown juice)from grass protein extraction using an un-heated anaerobic filter. Process Safety and Environmental Protection, 146, 886-892. https://doi.org/10.1016/j.psep.2020.12.026

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