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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Zhang, Y., Eser, B. E., Kristensen, P. & Guo, Z. (2020). Fatty acid hydratase for value-added biotransformation: A review. Chinese Journal of Chemical Engineering, 28(8), 2051-2063. https://doi.org/10.1016/j.cjche.2020.02.008

Chanquia, S. N., Huang, L., Garcia Linares, G., Dominguez de Maria, P. & Kara, S. (2020). Deep Eutectic Solvents as Smart Cosubstrate in Alcohol Dehydrogenase-Catalyzed Reductions. Catalysts, 10(9), 1-8. Article 1013. https://doi.org/10.3390/catal10091013

Appert, O., Garcia, A. R., Frei, R., Roduit, C., Constancias, F., Neuzil-Bunesova, V., Ferstl, R., Zhang, J., Akdis, C., Lauener, R., Lacroix, C. & Schwab, C. (2020). Initial butyrate producers during infant gut microbiota development are endospore formers. Environmental Microbiology, 22(9), 3909-3921. https://doi.org/10.1111/1462-2920.15167

Hjerrild, P., Tørring, T. & Poulsen, T. B. (2020). Dehydration reactions in polyfunctional natural products. Natural Product Reports, 37(8), 1043-1064. https://doi.org/10.1039/d0np00009d

Marietou, A., Kjeldsen, K. U. & Røy, H. (2020). Physicochemical and biological controls of sulfide accumulation in a high temperature oil reservoir. Applied Microbiology and Biotechnology, 104(19), 8467-8478. https://doi.org/10.1007/s00253-020-10828-0

He, D., Wei, W. & Guo, Z. (2020). Moderate Edible Oil Refining: State-of-the-Art in China. Journal of the American Oil Chemists' Society, 97(11), 1277-1279. https://doi.org/10.1002/aocs.12407

Hobisch, M., Holtmann, D., Gomes de Santos, P., Alcalde, M., Hollmann, F. & Kara, S. (2021). Recent developments in the use of peroxygenases – Exploring their high potential in selective oxyfunctionalisations. Biotechnology Advances, 51, Article 107615. https://doi.org/10.1016/j.biotechadv.2020.107615

Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S. & Kroutil, W. (2020). Extending the Library of Light‐Dependent Protochlorophyllide Oxidoreductases and their Solvent Tolerance, Stability in Light and Cofactor Flexibility. ChemCatChem, 12(16), 4044-4051. https://doi.org/10.1002/cctc.202000561

Zhang, J., Sturla, S. J., Lacroix, C. & Schwab, C. (2018). Gut microbial glycerol metabolism as an endogenous source of acrolein. mBio (Online), 9(1). https://doi.org/10.1128/mBio.01947-17

Santruckova, H., Kotas, P., Barta, J., Urich, T., Capek, P., Palmtag, J., Alves, R. J. E., Biasi, C., Diakova, K., Gentsch, N., Gittel, A., Guggenberger, G., Hugelius, G., Lashchinsky, N., Martikainen, P. J., Mikutta, R., Schleper, C., Schnecker, J., Schwab, C. ... Richter, A. (2018). Significance of dark CO2 fixation in arctic soils. Soil Biology and Biochemistry, 119, 11-21. https://doi.org/10.1016/j.soilbio.2017.12.021

Bengtsson, M., Wagner, K., Schwab, C., Urich, T. & Battin, T. J. (2018). Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels. Molecular Ecology, 27(14), 2913-2925. https://doi.org/10.1111/mec.14696

Bircher, L., Geirnaert, A., Hammes, F., Lacroix, C. & Schwab, C. (2018). Effect of cryopreservation and lyophilization on viability and growth of strict anaerobic human gut microbes. Microbial Biotechnology, 4(4), 721-733. https://doi.org/10.1111/1751-7915.13265

Asare, P. T., Greppi, A., Stettler, M., Schwab, C., J. A. Stevens, M. & Lacroix, C. (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by Lactobacillus reuteri. Frontiers in Microbiology, 9(1421), Article 1421. https://doi.org/10.3389/fmicb.2018.01421

Rocha Martin, V. N., Schwab, C., Krych, L., Voney, E., Geirnaert, A., Braegger, C. & Lacroix, C. (2019). Colonization of Cutibacterium Avidum During Infant Gut Microbiota Establishment. FEMS Microbiology Ecology, 95(1), Article fiy215. https://doi.org/10.1093/femsec/fiy215

Doo, E.-H., Schwab, C., Chassard, C. & Lacroix, C. (2019). Cumulative effect of yeast extract and fructooligosaccharide supplementation on composition and metabolic activity of elderly colonic microbiota in vitro. Journal of Functional Foods, 52, 43-53. https://doi.org/10.1016/j.jff.2018.10.020

Rocha Martin, V. N., Lacroix, C., Killer, J., Bunesova, V., Braegger, C. & Schwab, C. (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4), 506-516. https://doi.org/10.1016/j.syapm.2019.05.001

Zhang, J., Lacroix, C., Wortmann, E., Ruscheweyh, H.-J., Sunagawa, S., Sturla, S. J. & Schwab, C. (2019). Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. BMC Microbiology, 19(1), Article 99. https://doi.org/10.1186/s12866-019-1483-x

Schwab, C., Voney, E., Ramirez Garcia, A., Vischer, M. & Lacroix, C. (2019). Characterization of the Cultivable Microbiota in Fresh and Stored Mature Human Breast Milk. Frontiers in Microbiology, 10, Article 2666. https://doi.org/10.3389/fmicb.2019.02666

Tetteh Asare, P., Zurfluh, K., Greppi, A., Lynch, D., Schwab, C., Stephan, R. & Lacroix, C. (2020). Reuterin demonstrates antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1), Article 78. https://doi.org/10.3390/microorganisms8010078

Bircher, L., Schwab, C., Geirnaert, A., Greppi, A. & Lacroix, C. (2020). Planktonic and sessile artificial colonic microbiota harbor distinct composition and reestablish differently upon frozen and freeze-dried long-term storage. mSystems, 5(1), Article e00521-19. https://doi.org/10.1128/mSystems.00521-19

Greppi, A., Asare, P. T., Schwab, C., Zemp, N., Stephan, R. & Lacroix, C. (2020). Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from the chicken gastrointestinal tract. Frontiers in Microbiology, 11, Article 1166. https://doi.org/10.3389/fmicb.2020.01166

Modrackova, N., Vlkova, E., Tejnecky, V., Schwab, C. & Neuzil-Bunesova, V. (2020). Bifidobacterium β-glucosidase activity and fermentation of dietary plant glucosides is species and strain specific. Microorganisms, 8(6), Article 839. https://doi.org/10.3390/microorganisms8060839

Stødkilde, L., Ambye-Jensen, M. & Krogh Jensen, S. (2020). Biorefined grass-clover protein composition and effect on organic broiler performance and meat fatty acid profile. Journal of Animal Physiology and Animal Nutrition, 104(6), 1757-1767. https://doi.org/10.1111/jpn.13406

Mortensen, M. R., Skovsgaard, M. B., Märcher, A., Andersen, V. L., Palmfeldt, J., Nielsen, T. B., Tørring, T., Laursen, N. S., Andersen, K. R., Kjems, J. & Gothelf, K. V. (2020). Introduction of an Aldehyde Handle on Nanobodies by Affinity-Guided Labeling. Bioconjugate Chemistry, 31(5), 1295-1300. https://doi.org/10.1021/acs.bioconjchem.0c00151

Jørgensen, U., Kristensen, T., Jensen, S. K. & Ambye-Jensen, M., (2020). Bidrag til MOF spg. 8 i forbindelse med beslutningsforslag 15, No. 2020-0094295, 4 p., May 14, 2020.

Thomsen, T. & Borre-Gude, S. (2021). Creating a Strong Safety Culture in an Undergraduate Engineering Program. Journal of Chemical Education, 98(1), 118-124. https://doi.org/10.1021/acs.jchemed.0c00035

Wang, F., Li, R., Jian, H., Huang, Z., Wang, Y., Guo, Z. & Gao, R. (2020). Design and construction of an effective expression system with aldehyde tag for site-specific enzyme immobilization. Catalysts, 10(4), Article 410. https://doi.org/10.3390/catal10040410

Njakou Djomo, S., Knudsen, M. T., Martinsen, L., Andersen, M. S., Ambye-Jensen, M., Møller, H. B. & Hermansen, J. E. (2020). Green proteins: An energy-efficient solution for increased self-sufficiency in protein in Europe. Biofuels, Bioproducts and Biorefining, 14(3), 605-619. https://doi.org/10.1002/bbb.2098

Hobisch, M., van Schie, M. M. C. H., Kim, J., Andersen, K. R., Alcalde, M., Kourist, R., Park, C. B., Hollmann, F. & Kara, S. (2020). Solvent‐Free Photobiocatalytic Hydroxylation of Cyclohexane. ChemCatChem, 12(16), 4009-4013. https://doi.org/10.1002/cctc.202000512

Madsen, S. L., Mathiassen, S. K., Dyrmann, M., Laursen, M. S., Paz, L.-C. & Nyholm Jørgensen, R. (2020). Open Plant Phenotype Database of Common Weeds in Denmark. Remote Sensing, 12(8), Article 1246. https://doi.org/10.3390/rs12081246

Pellerin, A., Antler, G., Marietou, A., Turchyn, A. V. & Jørgensen, B. B. (2020). The effect of temperature on sulfur and oxygen isotope fractionation by sulfate reducing bacteria (Desulfococcus multivorans). FEMS Microbiology Letters, 367(9), Article fnaa061. https://doi.org/10.1093/femsle/fnaa061

Kara, S. & von Langermann, J. (2020). Kompartimentierung bei den Enzymkaskaden: statisch oder Durchfluss. BioSpektrum, 26(2), 215-217. https://doi.org/10.1007/s12268-020-1348-8

Hansen, B. K., Larsen, C. K., Nielsen, J. T., Svenningsen, E. B., Van, L. B., Jacobsen, K. M., Bjerring, M., Flygaard, R. K., Jenner, L. B., Nejsum, L. N., Brodersen, D. E., Mulder, F. A. A., Tørring, T. & Poulsen, T. B. (2020). Structure and Function of the Bacterial Protein Toxin Phenomycin. Structure, 28(5), 528-539.e9. https://doi.org/10.1016/j.str.2020.03.003

Engel, J., Mthethwa, K. S., Opperman, D. J. & Kara, S. (2019). Optimisation of the Convergent Cascade for Synthesis of Epsilon-Caprolactone. Poster session presented at BioTrans 2019, Groningen, Netherlands.

He, Y., Zhang, B., Guo, S., Guo, Z., Chen, B. & Wang, M. (2020). Sustainable biodiesel production from the green microalgae Nannochloropsis: Novel integrated processes from cultivation to enzyme-assisted extraction and ethanolysis of lipids. Energy Conversion and Management, 209, Article 112618. https://doi.org/10.1016/j.enconman.2020.112618

Kara, S. (2020). Rare algae enzyme to convert cooking oil into ready-to-use biofuel. In J. Bruun (Ed.), Profile 2020 (pp. 84-87). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Kara, S. (2020). She uses mushroom enzyme and light to create green chemicals. In J. Bruun (Ed.), Profile 2020 (pp. 80-83). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Victoria, M., Klarskov, P., Agarwala, S., Hjorth, M., Zhang, Q. & Kara, S. (2020). How do we get more women in academia? In J. Bruun (Ed.), Profile 2020 (pp. 16-19). Aarhus Universitet, Institut for Ingeniørvidenskab . http://www.e-pages.dk/aarhusuniversitet/2231/html5/

Jensen, R. K., Jabs, F., Miehe, M., Mølgaard, B., Pfützner, W., Möbs, C., Spillner, E. & Andersen, G. R. (2020). Structure of intact IgE and the mechanism of ligelizumab revealed by electron microscopy. Allergy: European Journal of Allergy and Clinical Immunology, 75(8), 1952-1961. https://doi.org/10.1111/all.14222

Philips, J. (2020). Extracellular electron uptake by acetogenic bacteria: Does H2 consumption favor the H2 evolution reaction on a cathode or metallic iron? Frontiers in Microbiology, 10, Article 2997. https://doi.org/10.3389/fmicb.2019.02997

Pedersen, J. N., Liu, S., Zhou, Y., Balle, T., Xu, X. & Guo, Z. (2020). Synergistic effects of binary ionic liquid-solvent systems on enzymatic esterification of esculin. Food Chemistry, 310, Article 125858. https://doi.org/10.1016/j.foodchem.2019.125858

Rauber, M., Roßbach, A., Jung, A., Müller, S., Möbs, C., Pfützner, W., Miehe, M., Spillner, E. & Jakob, T. (2020). The honey bee venom allergen Api m 10 displays one major IgE epitope, Api m 10160-174. Allergy: European Journal of Allergy and Clinical Immunology, 75(7), 1756-1759. https://doi.org/10.1111/all.14187

Pedersen, J. N., Pérez, B. & Guo, Z. (2019). Stability of cellulase in ionic liquids: correlations between enzyme activity and COSMO-RS descriptors. Scientific Reports, 9, Article 17479. https://doi.org/10.1038/s41598-019-53523-5

S.T.Srinivasamurthy, V., Böttcher, D., Engel, J., Kara, S. & Bornscheuer, U. T. (2020). A whole-cell process for the production of ε-caprolactone in aqueous media. Process Biochemistry, 88, 22-30. https://doi.org/10.1016/j.procbio.2019.10.009

Huang, L., Bittner, J. P., Dominguez De Maria, P., Jakobtorweihen, S. & Kara, S. (2020). Modeling Alcohol Dehydrogenase Catalysis in Deep Eutectic Solvent/Water Mixtures. ChemBioChem, 21(6), 811-817. https://doi.org/10.1002/cbic.201900624

Kragbæk Damborg, V., Krogh Jensen, S., Johansen, M., Ambye-Jensen, M. & Weisbjerg, M. R. (2019). Ensiled pulp from biorefining increased milk production in dairy cows compared with grass–clover silage. Journal of Dairy Science, 102(10), 8883-8897. https://doi.org/10.3168/jds.2018-16096

Lin, S., Liu, H., Svenningsen, E. B., Pedersen, C., Nørby, P., Tørring, T. & Poulsen, T. (2019). Diversity Focused Semisyntheses of Tetronate Polyether Ionophores. ChemRxiv. https://chemrxiv.org/articles/Diversity_Focused_Semisyntheses_of_Tetronate_Polyether_Ionophores/8299715

Lærke, H. N., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. In M. L. Chizzotti (Ed.), Energy and protein metabolism and nutrition (pp. 177-178). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-891-9

Yong-Jin, H., Huang, Z., Zhong, C., Guo, Z. & Chen, B. (2019). Pressurized liquid extraction with ethanol as a green and efficient technology to lipid extraction of Isochrysis biomass. Bioresource Technology, 293, Article 122049. https://doi.org/10.1016/j.biortech.2019.122049

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