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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Zhang, Y., Pedersen, J. N., Eser, B. E. & Guo, Z. (2022). Biodegradation of polyethylene and polystyrene: From microbial deterioration to enzyme discovery. Biotechnology Advances, 60, Article 107991. https://doi.org/10.1016/j.biotechadv.2022.107991

Dai, R. & Guo, Z. (2022). Pd/Ni-Al hydrotalcite for base-free alcohol oxidation: Dependency of activity and selectivity on palladium precursors and reduction reagents. Molecular Catalysis , 526, Article 112403. https://doi.org/10.1016/j.mcat.2022.112403

Stødkilde-Jørgensen, L., Lærke, H. N., Ambye-Jensen, M. & Jensen, S. K. (2022). Protein concentrates from lucerne; effect of processing on ileal digestibility. Animal - Science proceedings, 13(2), 145. Article O1. https://doi.org/10.1016/j.anscip.2022.04.002

Xiao, R., Fu, Y., Bai, L., Chu, C., Ma, J., Wei, Z., Spinney, R., Dionysiou, D. D. & Pu, J. (2022). Kinetics and mechanistic aspects of superoxide radical-mediated transformation of ascorbate. Journal of Environmental Chemical Engineering, 10(3), Article 107736. https://doi.org/10.1016/j.jece.2022.107736

Barbato, M., Palma, E., Marzocchi, U., Cruz Viggi, C., Rossetti, S., Aulenta, F. & Scoma, A. (2022). Snorkels enhance alkanes respiration at ambient and increased hydrostatic pressure (10 MPa) by either supporting the TCA cycle or limiting alternative routes for acetyl-CoA metabolism. Journal of Environmental Management, 316, Article 115244. https://doi.org/10.1016/j.jenvman.2022.115244

T. Grosmann, M., Andrade, T. A., di Bitonto, L., Pastore, C., L. Corazza, M., Tronci, S. & Errico, M. (2022). Hydrated metal salt pretreatment and alkali catalyzed reactive distillation: A two-step production of waste cooking oil biodiesel. Chemical Engineering and Processing - Process Intensification, 176, Article 108980. https://doi.org/10.1016/j.cep.2022.108980

Meyer, L.-E., Andersen, M. B. & Kara, S. (2022). A Deep Eutectic Solvent Thermomorphic Multiphasic System for Biocatalytic Applications. Angewandte Chemie International Edition, 61(31), Article e202203823. https://doi.org/10.1002/anie.202203823

Yazdi, F. G., Dalgaard, L. B., Li, Q., Ruscheweyh, H.-J., Thøgersen, R., Bertram, H. C. S., Hansen, M. & Schwab, C. (2022). Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women. Journal of Functional Foods, 93, Article 105089. https://doi.org/10.1016/j.jff.2022.105089

Dalby, F. R., Guldberg, L. B., Feilberg, A. & Kofoed, M. V. W. (2022). Reducing greenhouse gas emissions from pig slurry by acidification with organic and inorganic acids. PLOS ONE, 17(5), Article e0267693. https://doi.org/10.1371/journal.pone.0267693

Ambye-Jensen, M., (2022). Støtte til kvalificering af bioraffineringsprojekter – Del 1, No. 2022-0356347, 4 p., May 12, 2022.

Bai, L., Jiang, Y., Xia, D., Wei, Z., Spinney, R., Dionysiou, D. D., Minakata, D., Xiao, R., Xie, H. B. & Chai, L. (2022). Response to Comment on "mechanistic Understanding of Superoxide Radical-Mediated Degradation of Perfluorocarboxylic Acids". Environmental Science & Technology, 56(8), 5289-5291. https://doi.org/10.1021/acs.est.2c01335

Bai, L., He, L., Fu, Y., Chu, C., Wei, Z., Spinney, R., Dionysiou, D. D., Liang, Y. & Xiao, R. (2022). New insight to superoxide radical-mediated degradation of pentachlorophenate: Kinetic determination and theoretical calculations. Chemical Communications, 58(16), 2666-2669. https://doi.org/10.1039/d1cc06834b

Irla, M. & Wendisch, V. F. (2022). Efficient cell factories for the production of N-methylated amino acids and for methanol-based amino acid production. Microbial Biotechnology, 15(8), 2145-2159. https://doi.org/10.1111/1751-7915.14067

Lyu, J., Zhang, J., Zhu, J., Chen, S., Han, T., Zhang, Y., Gao, R., Xie, G. & Guo, Z. (2022). Molecular dynamics simulation guided distal mutation of Thermotoga naphthophila β-glucosidase for significantly enhanced synthesis of galactooligosaccharides and expanded product scope. International Journal of Biological Macromolecules, 210, 21-32. https://doi.org/10.1016/j.ijbiomac.2022.05.002

Huang, Z., Guo, S., Guo, Z., He, Y. & Chen, B. (2022). Integrated green one-step strategy for concurrent recovery of phycobiliproteins and polyunsaturated fatty acids from wet Porphyridium biomass. Food Chemistry, 389, Article 133103. https://doi.org/10.1016/j.foodchem.2022.133103

Milic, M., Byström, E., Domínguez de María, P. & Kara, S. (2022). Enzymatic Cascade for the Synthesis of 2,5-Furandicarboxylic Acid in Biphasic and Microaqueous Conditions: ‘Media-Agnostic’ Biocatalysts for Biorefineries. ChemSusChem, 15(9), Article e202102704. https://doi.org/10.1002/cssc.202102704

Mapelli, F., Barbato, M., Chouaia, B., Riva, V., Daffonchio, D. & Borin, S. (2022). Bacterial community structure and diversity along the halocline of Tyro deep-sea hypersaline anoxic basin. Annals of Microbiology, 72(1), Article 7. https://doi.org/10.1186/s13213-022-01667-7

Liu, G., Bogojevic, O., Pedersen, J. N. & Guo, Z. (2022). Edible oleogels as solid fat alternatives: Composition and oleogelation mechanism implications. Comprehensive Reviews in Food Science and Food Safety, 21(3), 2077-2104. https://doi.org/10.1111/1541-4337.12928

Xie, D., Ji, X., Dai, Y., He, Y., Sun, H., Guo, Z., Yang, Y., Zheng, X. & Chen, B. (2022). Chlorella vulgaris cultivation in pilot-scale to treat real swine wastewater and mitigate carbon dioxide for sustainable biodiesel production by direct enzymatic transesterification. Bioresource Technology, 349, Article 126886. https://doi.org/10.1016/j.biortech.2022.126886

Aagaard, J. B., Sivelle, C., Fischer, M., Byskov, K., Laursen, N. S., Pfützner, W., Jakob, T., Möbs, C., Miehe, M. & Spillner, E. (2022). Nanobody-based human antibody formats act as IgE surrogate in hymenoptera venom allergy. Allergy: European Journal of Allergy and Clinical Immunology, 77(9), 2859-2862. https://doi.org/10.1111/all.15391

Andrade, T. A. & Ambye-Jensen, M. (2022). Process Integration and Techno-Economic Assessment of a Green Biorefinery Demonstration Scale Platform for Leaf Protein Production. In L. Montastruc & S. Negny (Eds.), Computer Aided Chemical Engineering: 32nd European Symposium on Computer Aided Process Engineering (Vol. 51, pp. 877-882). Article 147 Elsevier. https://doi.org/10.1016/B978-0-323-95879-0.50147-8, https://doi.org/10.1016/B978-0-323-95879-0.50147-8

Nærdal, I., Netzer, R., Irla, M., Krog, A., Heggeset, T. M. B., Wendisch, V. F. & Brautaset, T. (2017). L-lysine production by Bacillus methanolicus: Genome-based mutational analysis and L-lysine secretion engineering. Journal of Biotechnology, 244, 25-33. https://doi.org/10.1016/j.jbiotec.2017.02.001

Klein, V. J., Irla, M., López, M. G., Brautaset, T. & Brito, L. F. (2022). Unravelling Formaldehyde Metabolism in Bacteria: Road towards Synthetic Methylotrophy. Microorganisms, 10(2), Article 220. https://doi.org/10.3390/microorganisms10020220

Ng, K.-S., Chang, Y.-C., Chen, Y.-P., Lo, Y.-H., Wang, S.-Y. & Chen, M.-J. (2022). Characterization of exopolysaccharide-producing lactic acid bacteria from Taiwanese ropy fermented milk and their application in low-fat fermented milk. Animal Bioscience, 35(2), 281-289. https://doi.org/10.5713/ab.21.0251

Wang, S.-Y., Huang, R.-F., Ng, K.-S., Chen, Y.-P., Shiu, J.-S. & Chen, M.-J. (2021). Co-Culture Strategy of Lactobacillus kefiranofaciens HL1 for Developing Functional Fermented Milk. Foods, 10(9), 2098. Article 2098. https://doi.org/10.3390/foods10092098

Khider, M. L. K., Brautaset, T. & Irla, M. (2021). Methane monooxygenases: central enzymes in methanotrophy with promising biotechnological applications. World Journal of Microbiology and Biotechnology, 37(4), Article 72. https://doi.org/10.1007/s11274-021-03038-x

Irla, M., Hakvåg, S. & Brautaset, T. (2021). Developing a riboswitch-mediated regulatory system for metabolic flux control in thermophilic bacillus methanolicus. International Journal of Molecular Sciences , 22(9), Article 4686. https://doi.org/10.3390/ijms22094686

Brito, L. F., Irla, M., Nærdal, I., Le, S. B., Delépine, B., Heux, S. & Brautaset, T. (2021). Evaluation of Heterologous Biosynthetic Pathways for Methanol-Based 5-Aminovalerate Production by Thermophilic Bacillus methanolicus. Frontiers in Bioengineering and Biotechnology, 9, Article 686319. https://doi.org/10.3389/fbioe.2021.686319

Gruenberg, M., Irla, M., Myllek, S. & Draths, K. (2021). Characterization of two 3-deoxy-D-Arabino-Heptulosonate 7-phosphate synthases from Bacillus methanolicus. Protein Expression and Purification, 188, Article 105972. https://doi.org/10.1016/j.pep.2021.105972

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Article e202101625. https://doi.org/10.1002/cctc.202101625

Bonefeld, B. E., Lawther, M., Kristensen, C., Bentsen, N. S., Jørgensen, U. & Ambye-Jensen, M. (2019). MAN-MADE TEXTILE FIBRE OF NON-WOOD SIDESTREAM BIOMASS: - GRØNNE HOSER INBIOM PROJECT -. Poster session presented at Circular Bioeconomy Days 2019, Foulum, Denmark. https://conferences.au.dk/fileadmin/conferences/2019/bioeconomy/Posters/Birgit_Bonefeld_Man-made_textile_fibre_of_nonwood_biomass_sidestream_-_Final.pdf

Garcia Soriano, D. A., Andersen, F. D., Nygaard, J. V. & Tørring, T. (2021). ColFeatures: Automated data extraction and classification of bacterial colonies. bioRxiv. https://doi.org/10.1101/2021.05.27.445853

Meyer, J., Meyer, L.-E. & Kara, S. (2022). Enzyme immobilization in hydrogels: A perfect liaison for efficient and sustainable biocatalysis. Engineering in Life Sciences, 22(3-4), 165-177. https://doi.org/10.1002/elsc.202100087

Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), Article e202100606. https://doi.org/10.1002/cbic.202100606

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2022). The use of treatment wetlands plants for protein and cellulose valorization in biorefinery platform. Science of the Total Environment, 810, Article 152376. https://doi.org/10.1016/j.scitotenv.2021.152376

Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, Article 780092. https://doi.org/10.3389/fmicb.2021.780092

Møller, A. H., Hammershøj, M., Hachow Motta dos Passos, N., Tanambell, H., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Danielsen, M., Jensen, S. K. & Dalsgaard, T. K. (Ed.) (2021). Biorefinery of Green Biomass─How to Extract and Evaluate High Quality Leaf Protein for Food? Journal of Agricultural and Food Chemistry, 69(48), 14341-14357. https://doi.org/10.1021/acs.jafc.1c04289

Bittner, J. P., Zhang, N., Huang, L., Domínguez de María, P., Jakobtorweihen, S. & Kara, S. (2022). Impact of deep eutectic solvents (DESs) and individual DES components on alcohol dehydrogenase catalysis: Connecting experimental data and molecular dynamics simulations. Green Chemistry, 24(3), 1120-1131. https://doi.org/10.1039/D1GC04059F

Jurkas, V., Winkler, C. K., Poschenrieder, S., Oliveira, P., C. Pacheco, C., A. Ferreira, E., Weissensteiner, F., De Santis, P., Kara, S., Kourist, R., Tamagnini, P. & Kroutil, W. (2022). Expression and activity of heterologous hydroxyisocaproate dehydrogenases in Synechocystis sp. PCC 6803 ΔhoxYH. Engineering Microbiology, 2(1), Article 100008. https://doi.org/10.1016/j.engmic.2021.100008

Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H₂ conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, Article 100876. https://doi.org/10.1016/j.biteb.2021.100876

Chanquia, S. N., Vernet Armengol, G. & Kara, S. (2022). Photobioreactors for cultivation and synthesis: Specifications, challenges, and perspectives. Engineering in Life Sciences, 22(12), 712-724. https://doi.org/10.1002/elsc.202100070

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Biller, P., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2021). Production of high-value bio-resources from treatment wetland biomass. Abstract from WETPOL 2021: 9th International Symposium on Wetland Pollutants Dynamics and Control, Vienna, Austria.

Sonnenberg-Riethmacher, E., Miehe, M. & Riethmacher, D. (2021). Periostin in Allergy and Inflammation. Frontiers in Immunology, 12, Article 722170. https://doi.org/10.3389/fimmu.2021.722170

Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), Article 106390. https://doi.org/10.1016/j.jece.2021.106390

Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840

Lærke, H. N., Stødkilde, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. EAAP scientific series, 138, 177-178. https://doi.org/10.3920/978-90-8686-891-9_28

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), Article 9295. https://doi.org/10.3390/su13169295

Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in applied microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004

Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. https://doi.org/10.1038/s41396-021-01061-2

Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, Article 117528. https://doi.org/10.1016/j.watres.2021.117528

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