Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Asare, P. T., Greppi, A., Stettler, M., Schwab, C., J. A. Stevens, M. & Lacroix, C. (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by Lactobacillus reuteri. Frontiers in Microbiology, 9(1421), Article 1421. https://doi.org/10.3389/fmicb.2018.01421

Rocha Martin, V. N., Schwab, C., Krych, L., Voney, E., Geirnaert, A., Braegger, C. & Lacroix, C. (2019). Colonization of Cutibacterium Avidum During Infant Gut Microbiota Establishment. FEMS Microbiology Ecology, 95(1), Article fiy215. https://doi.org/10.1093/femsec/fiy215

Doo, E-H., Schwab, C., Chassard, C. & Lacroix, C. (2018). Cumulative effect of yeast extract and fructooligosaccharide supplementation on composition and metabolic activity of elderly colonic microbiota in vitro. Journal of Functional Foods, 52, 43-53. https://doi.org/10.1016/j.jff.2018.10.020

Rocha Martin, V. N., Lacroix, C., Killer, J., Bunesova, V., Braegger, C. & Schwab, C. (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4), 506-516. https://doi.org/10.1016/j.syapm.2019.05.001

Zhang, J., Lacroix, C., Wortmann, E., Ruscheweyh, H-J., Sunagawa, S., Sturla, S. J. & Schwab, C. (2019). Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. BMC Microbiology, 19(99), Article 99. https://doi.org/10.1186/s12866-019-1483-x

Schwab, C., Voney, E., Ramirez Garcia, A., Vischer, M. & Lacroix, C. (2019). Characterization of the Cultivable Microbiota in Fresh and Stored Mature Human Breast Milk. Frontiers in Microbiology, 10, Article 2666. https://doi.org/10.3389/fmicb.2019.02666

Tetteh Asare, P., Zurfluh, K., Greppi, A., Lynch, D., Schwab, C., Stephan, R. & Lacroix, C. (2020). Reuterin demonstrates antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1), Article 78. https://doi.org/10.3390/microorganisms8010078

Bircher, L., Schwab, C., Geirnaert, A., Greppi, A. & Lacroix, C. (2020). Planktonic and sessile artificial colonic microbiota harbor distinct composition and reestablish differently upon frozen and freeze-dried long-term storage. mSystems, 5(1), Article e00521-19. https://doi.org/10.1128/mSystems.00521-19

Greppi, A., Asare, P. T., Schwab, C., Zemp, N., Stephan, R. & Lacroix, C. (2020). Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from the chicken gastrointestinal tract. Frontiers in Microbiology, 11, Article 1166. https://doi.org/10.3389/fmicb.2020.01166

Modrackova, N., Vlkova, E., Tejnecky, V., Schwab, C. & Neuzil-Bunesova, V. (2020). Bifidobacterium β-glucosidase activity and fermentation of dietary plant glucosides is species and strain specific. Microorganisms, 8(6), Article 839. https://doi.org/10.3390/microorganisms8060839

Stødkilde, L., Ambye-Jensen, M. & Krogh Jensen, S. (2020). Biorefined grass-clover protein composition and effect on organic broiler performance and meat fatty acid profile. Journal of Animal Physiology and Animal Nutrition, 104(6), 1757-1767. Advance online publication. https://doi.org/10.1111/jpn.13406

Mortensen, M. R., Skovsgaard, M. B., Märcher, A., Andersen, V. L., Palmfeldt, J., Nielsen, T. B., Tørring, T., Laursen, N. S., Andersen, K. R., Kjems, J. & Gothelf, K. V. (2020). Introduction of an Aldehyde Handle on Nanobodies by Affinity-Guided Labeling. Bioconjugate Chemistry, 31(5), 1295-1300. https://doi.org/10.1021/acs.bioconjchem.0c00151

Jørgensen, U., Kristensen, T., Jensen, S. K. & Ambye-Jensen, M., (2020). Bidrag til MOF spg. 8 i forbindelse med beslutningsforslag 15, No. 2020-0094295, 4 p., May 14, 2020.

Thomsen, T. & Borre-Gude, S. (2021). Creating a Strong Safety Culture in an Undergraduate Engineering Program. Journal of Chemical Education, 98(1), 118-124. Advance online publication. https://doi.org/10.1021/acs.jchemed.0c00035

Wang, F., Li, R., Jian, H., Huang, Z., Wang, Y., Guo, Z. & Gao, R. (2020). Design and construction of an effective expression system with aldehyde tag for site-specific enzyme immobilization. Catalysts, 10(4), Article 410. https://doi.org/10.3390/catal10040410

Njakou Djomo, S., Knudsen, M. T., Martinsen, L., Andersen, M. S., Ambye-Jensen, M., Møller, H. B. & Hermansen, J. E. (2020). Green proteins: An energy-efficient solution for increased self-sufficiency in protein in Europe. Biofuels, Bioproducts and Biorefining, 14(3), 605-619. Advance online publication. https://doi.org/10.1002/bbb.2098

Hobisch, M., van Schie, M. M. C. H., Kim, J., Andersen, K. R., Alcalde, M., Kourist, R., Park, C. B., Hollmann, F. & Kara, S. (2020). Solvent‐Free Photobiocatalytic Hydroxylation of Cyclohexane. ChemCatChem, 12(16), 4009-4013. https://doi.org/10.1002/cctc.202000512

Pellerin, A., Antler, G., Marietou, A., Turchyn, A. V. & Jørgensen, B. B. (2020). The effect of temperature on sulfur and oxygen isotope fractionation by sulfate reducing bacteria (Desulfococcus multivorans). FEMS Microbiology Letters, 367(9), Article fnaa061. Advance online publication. https://doi.org/10.1093/femsle/fnaa061

Kara, S. & von Langermann, J. (2020). Kompartimentierung bei den Enzymkaskaden: statisch oder Durchfluss. BioSpektrum, 26(2), 215-217. https://doi.org/10.1007/s12268-020-1348-8

Hansen, B. K., Larsen, C. K., Nielsen, J. T., Svenningsen, E. B., Van, L. B., Jacobsen, K. M., Bjerring, M., Flygaard, R. K., Jenner, L. B., Nejsum, L. N., Brodersen, D. E., Mulder, F. A. A., Tørring, T. & Poulsen, T. B. (2020). Structure and Function of the Bacterial Protein Toxin Phenomycin. Structure, 28(5), 528-539.e9. https://doi.org/10.1016/j.str.2020.03.003

He, Y., Zhang, B., Guo, S., Guo, Z., Chen, B. & Wang, M. (2020). Sustainable biodiesel production from the green microalgae Nannochloropsis: Novel integrated processes from cultivation to enzyme-assisted extraction and ethanolysis of lipids. Energy Conversion and Management, 209, Article 112618. https://doi.org/10.1016/j.enconman.2020.112618

Kara, S. (2020). Rare algae enzyme to convert cooking oil into ready-to-use biofuel. In J. Bruun (Ed.), Profile 2020 (pp. 84-87). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Kara, S. (2020). She uses mushroom enzyme and light to create green chemicals. In J. Bruun (Ed.), Profile 2020 (pp. 80-83). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Jensen, R. K., Jabs, F., Miehe, M., Mølgaard, B., Pfützner, W., Möbs, C., Spillner, E. & Andersen, G. R. (2020). Structure of intact IgE and the mechanism of ligelizumab revealed by electron microscopy. Allergy: European Journal of Allergy and Clinical Immunology, 75(8), 1952-1961. https://doi.org/10.1111/all.14222

Philips, J. (2020). Extracellular electron uptake by acetogenic bacteria: Does H2 consumption favor the H2 evolution reaction on a cathode or metallic iron? Frontiers in Microbiology, 10, Article 2997. https://doi.org/10.3389/fmicb.2019.02997

Pedersen, J. N., Liu, S., Zhou, Y., Balle, T., Xu, X. & Guo, Z. (2020). Synergistic effects of binary ionic liquid-solvent systems on enzymatic esterification of esculin. Food Chemistry, 310, Article 125858. https://doi.org/10.1016/j.foodchem.2019.125858

Rauber, M., Roßbach, A., Jung, A., Müller, S., Möbs, C., Pfützner, W., Miehe, M., Spillner, E. & Jakob, T. (2020). The honey bee venom allergen Api m 10 displays one major IgE epitope, Api m 10160-174. Allergy: European Journal of Allergy and Clinical Immunology, 75(7), 1756-1759. Advance online publication. https://doi.org/10.1111/all.14187

Pedersen, J. N., Pérez, B. & Guo, Z. (2019). Stability of cellulase in ionic liquids: correlations between enzyme activity and COSMO-RS descriptors. Scientific Reports, 9, Article 17479. https://doi.org/10.1038/s41598-019-53523-5

S.T.Srinivasamurthy, V., Böttcher, D., Engel, J., Kara, S. & Bornscheuer, U. T. (2020). A whole-cell process for the production of ε-caprolactone in aqueous media. Process Biochemistry, 88, 22-30. https://doi.org/10.1016/j.procbio.2019.10.009

Huang, L., Bittner, J. P., Dominguez De Maria, P., Jakobtorweihen, S. & Kara, S. (2020). Modeling Alcohol Dehydrogenase Catalysis in Deep Eutectic Solvent/Water Mixtures. ChemBioChem, 21(6), 811-817. Advance online publication. https://doi.org/10.1002/cbic.201900624

Kragbæk Damborg, V., Krogh Jensen, S., Johansen, M., Ambye-Jensen, M. & Weisbjerg, M. R. (2019). Ensiled pulp from biorefining increased milk production in dairy cows compared with grass–clover silage. Journal of Dairy Science, 102(10), 8883-8897. https://doi.org/10.3168/jds.2018-16096

Lin, S., Liu, H., Svenningsen, E. B., Pedersen, C., Nørby, P., Tørring, T. & Poulsen, T. (2019). Diversity Focused Semisyntheses of Tetronate Polyether Ionophores. ChemRxiv. https://chemrxiv.org/articles/Diversity_Focused_Semisyntheses_of_Tetronate_Polyether_Ionophores/8299715

Lærke, H. N., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. In M. L. Chizzotti (Ed.), Energy and protein metabolism and nutrition (pp. 177-178). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-891-9

Yong-Jin, H., Huang, Z., Zhong, C., Guo, Z. & Chen, B. (2019). Pressurized liquid extraction with ethanol as a green and efficient technology to lipid extraction of Isochrysis biomass. Bioresource Technology, 293, Article 122049. https://doi.org/10.1016/j.biortech.2019.122049

Eser, B. E., Poborsky, M., Dai, R., Kishino, S., Ljubic, A., Takeuchi, M., Jacobsen, C., Ogawa, J., Kristensen, P. & Guo, Z. (2020). Rational Engineering of Hydratase from Lactobacillus Acidophilus Reveals Critical Residues Directing Substrate Specificity and Regioselectivity. ChemBioChem, 21(4), 550-563. Advance online publication. https://doi.org/10.1002/cbic.201900389

Dominguez de Maria, P., Guajardo, N. & Kara, S. (2019). Enzyme catalysis: in DES, with DES, and in the presence of DES. In D. J. Ramón & G. Guillena (Eds.), Deep eutectic solvents: synthesis, properties, and applications (pp. 257-272). Wiley. https://investigadores.conicyt.cl/es/public_search/work?id=509565

Kamp, A., Ambye-Jensen, M. & Østergård, H. (2019). Modelling matter and energy flows of local, refined grass-clover protein feed as alternative to imported soy meal. Ecological Modelling, 410, 1-12. Article 108738. https://doi.org/10.1016/j.ecolmodel.2019.108738

Schmid, J. M., Skjold, T., Kolstad, H. A., Miehe, M., Spillner, E. & Hoffmann, H. J. (2019). Work-related allergic asthma: Clinical work-up of a 45-year old male working in animal feed producing industry. Allergy: European Journal of Allergy and Clinical Immunology, 74, 316-316.

Strecker, C., Bärenfänger, M., Miehe, M., Spillner, E. & Meyer, B. (2020). In Silico Evaluation of the Binding Site of Fucosyltransferase 8 and First Attempts to Synthesize an Inhibitor with Drug-Like Properties. ChemBioChem, 21(13), 1923-1931. Advance online publication. https://doi.org/10.1002/cbic.201900289

Engel, J., Cordellier, A., Huang, L. & Kara, S. (2019). Enzymatic Ring‐Opening Polymerization of Lactones: Traditional Approaches and Alternative Strategies. ChemCatChem, 11(20), 4983-4997. Advance online publication. https://doi.org/10.1002/cctc.201900976

Liu, S., Yu, B., Wang, Z., Hu, J., Fu, M., Wang, Y., Liu, J., Guo, Z., Xu, X. & Ding, Y. (2019). Highly selective isomerization of cottonseed oil into conjugated linoleic acid catalyzed by multiwalled carbon nanotube supported ruthenium. R S C Advances, 36(36), 20698-20705. https://doi.org/10.1039/C9RA02640A

Abd El-Maksoud , A. A., Anankanbil, S., Zhou, Y., H. Abd El-Ghany, I., S. El-Beltagi, H., Banerjee, C., Petersen, S. V. & Guo, Z. (2019). Grafting phenolics onto milk protein via conjugated polymerization for delivery of multiple functionalities: Synthesis and characterization. Food Chemistry, 301, Article 125298. https://doi.org/10.1016/j.foodchem.2019.125298

Larsen, S. U., Ambye-Jensen, M., Jørgensen, H. & Jørgensen, U. (2019). Ensiling of the pulp fraction after biorefining of grass into pulp and protein juice. Industrial Crops and Products, 139(November), Article 111576. https://doi.org/10.1016/j.indcrop.2019.111576

Jensen, M. B., Strübing, D., de Jonge, N., Nielsen, J. L., Ottosen, L. D. M., Koch, K. & Kofoed, M. V. W. (2019). Stick or leave - Pushing methanogens to biofilm formation for ex situ biomethanation. Bioresource Technology, 291, Article 121784. Advance online publication. https://doi.org/10.1016/j.biortech.2019.121784

Buescher, N., Sayoga, G., Rübsam, K., Jakob, F., Schwaneberg, U., Kara, S. & Liese, A. (2019). Biocatalyst Immobilization by Anchor Peptides on an Additively Manufacturable Material. Organic Process Research & Development, 23(9), 1852-1859. Advance online publication. https://doi.org/10.1021/acs.oprd.9b00152

Cheng, W., Anankanbil, S., Pérez, B., ILYASOGLU, H., Liu, G. & Guo, Z. (2019). Water-mediated catalyst-free synthesis of lysine-based ampholytic amphiphiles for multipurpose applications: Characterization and pH-responsive emulsifying properties. Journal of Colloid and Interface Science, 554, 404-416. https://doi.org/10.1016/j.jcis.2019.06.104

Kara, S. & Liese, A. (2019). Process considerations for the application of enzymes. In A. Vogel & O. May (Eds.), Industrial enzyme applications (pp. 71-94). Wiley. https://books.google.dk/books?id=eJGfDwAAQBAJ&pg=PA76&lpg=PA76&dq=%22Process+Considerations+for+the+Application+of+Enzymes%22&source=bl&ots=B5xnLGv7h9&sig=ACfU3U2rZsZwykthd-I_bErmKgtQPcc3AQ&hl=da&sa=X&ved=2ahUKEwj0ss-I8qTjAhXC-KQKHRcbBf4Q6AEwAHoECAIQAQ#v=onepage&q=%22Process%20Considerations%20for%20the%20Application%20of%20Enzymes%22&f=false

Marietou, A., Lund, M. B., Marshall, I. P. G., Schreiber, L. & Jørgensen, B. B. (2020). Complete genome sequence of Desulfobacter hydrogenophilus AcRS1. Marine Genomics, 50, Article 100691. https://doi.org/10.1016/j.margen.2019.05.006

Li, J., Yong-Jin, H., Anankanbil, S. & Guo, Z. (2019). Phospholipid-Based Surfactants. In D. G. Hayes, D. K. Y. Solaiman & R. D. Ashby (Eds.), Biobased Surfactants: Synthesis, Properties, and Applications (2 ed., pp. 243-286). Academic Press. https://doi.org/10.1016/B978-0-12-812705-6.00007-1

Zhang, Y., Pan, J., Luan, Z. J., Xu, G. C., Park, S. & Xu, J. H. (2014). Cloning and Characterization of a Novel Esterase from Rhodococcus sp. for Highly Enantioselective Synthesis of a Chiral Cilastatin Precursor. Applied Environmental Microbiology, 80(23), 7348-7355. https://doi.org/10.1128/AEM.01597-14

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Revised 21.03.2023

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