Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Röllig, R., Paul, C. E., Claeys-Bruno, M., Duquesne, K., Kara, S. & Alphand, V. (2021). Divorce in the two-component BVMO family: the single oxygenase for enantioselective chemo-enzymatic Baeyer–Villiger oxidations. Organic & Biomolecular Chemistry, 19(15), 3441-3450. https://doi.org/10.1039/D1OB00015B

Zhang, Y., Eser, B. E. & Guo, Z. (2021). A bi‐enzymatic cascade pathway towards optically pure FAHFAs. ChemBioChem, 22(12), 2146-2153. https://doi.org/10.1002/cbic.202100070

Zhang, Y., Eser, B. E., Kougioumtzoglou, G., Eser, Z., Poborsky, M., Kishino, S., Takeuchi, M., Ogawa, J., Kristensen, P. & Guo, Z. (2021). Effects of the engineering of a single binding pocket residue on specificity and regioselectivity of hydratases from Lactobacillus Acidophilus. Biochemical Engineering Journal, 171, Article 108006. https://doi.org/10.1016/j.bej.2021.108006

Lyu, J., Gao, R. & Guo, Z. (2021). Galactosyldiacylglycerols: From a Photosynthesis-Associated Apparatus to Structure-Defined In Vitro Assembling. Journal of Agricultural and Food Chemistry, 69(32), 8910–8928. Advance online publication. https://doi.org/10.1021/acs.jafc.1c00204

Kara, S. & Rudroff, F. (2021). Perspectives: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 179-181). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (2021). Introduction: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 1-6). Springer. https://doi.org/10.1007/978-3-030-65718-5

Petermeier, P. & Kara, S. (2021). Enzyme Cascade Reaction Engineering. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 109-124). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (Eds.) (2021). Enzyme Cascade Design and Modelling. Springer. https://doi.org/10.1007/978-3-030-65718-5

Dos Reis Vechi, N., Agnessens, L. M., Feilberg, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). In situ biomethanation: Inoculum origin influences acetate consumption rate during hydrogen addition. Bioresource Technology Reports, 14, Article 100656. https://doi.org/10.1016/j.biteb.2021.100656

Veshareh, M. J., Kjeldsen, K. U., Findlay, A. J., Nick, H. M., Røy, H. & Marietou, A. (2021). Nitrite is a more efficient inhibitor of microbial sulfate reduction in oil reservoirs compared to nitrate and perchlorate: A laboratory and field-scale simulation study. International Biodeterioration and Biodegradation, 157, Article 105154. https://doi.org/10.1016/j.ibiod.2020.105154

Kroutil, W., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber , B. & Schmermund, L. (2021). Chromoselective Photocatalysis Enables Stereocomplementary Biocatalytic Pathways. Angewandte Chemie, 60(13), 6965-6969. https://doi.org/10.1002/anie.202100164

Marsol-Vall, A., Aitta, E., Guo, Z. & Yang, B. (2022). Green technologies for production of oils rich in n-3 polyunsaturated fatty acids from aquatic sources. Critical Reviews in Food Science and Nutrition, 62(11), 2942-2962. Advance online publication. https://doi.org/10.1080/10408398.2020.1861426

Schmermund, L., Reischauer, S., Bierbaumer, S., Winkler, C. K., Diaz-Rodriguez, A., J. Edwards, L., Kara, S., Mielke, T., Cartwright, J., Grogan, G., Pieber, B. & Kroutil, W. (2021). Switching Between Enantiomers by Combining Chromoselective Photocatalysis and Biocatalysis. ChemRxiv. file:///C:/Users/Mogens/Downloads/PhotoCat-switching_product_ChemRxiv.pdf

Eser, B. E., Zhang, Y., Zong, L. & Guo, Z. (2021). Self-sufficient Cytochrome P450s and Their Potential Applications in Biotechnology. Chinese Journal of Chemical Engineering, 30, 121-135. https://doi.org/10.1016/j.cjche.2020.12.002

Zong, L., Gao, R., Guo, Z., Shao, Z., Wang, Y. & Eser, B. E. (2021). Characterization and modification of two self-sufficient CYP102 family enzymes from Bacillus amyloliquefaciens DSM 7 with distinct regioselectivity towards fatty acid hydroxylation. Biochemical Engineering Journal, 166, Article 107871. https://doi.org/10.1016/j.bej.2020.107871

Knudsen, M. T., Ambye-Jensen, M., Kristensen, T. & Eriksen, J. (2020). Carbon footprint of protein from organic multispecies mixtures processed in a biorefinery. Poster session presented at 12th International Conference on Life Cycle Assessment of Food 2020, Berlin, Germany.

Mountraki, A., Hsieh, C-W. & Ambye-Jensen, M. (2020). Integrated Biorefineries: The case of AU green biorefinery. Abstract from Computer Aided Process Engineering Forum 2020, Lyngby, Denmark.

Maus, I., Tubbesing, T., Wibberg, D., Heyer, R., Hassa, J., Tomazetto, G., Huang, L., Bunk, B., Spröer, C., Benndorf, D., Zverlov, V., Pühler, A., Klocke, M., Sczyrba, A. & Schlüter, A. (2020). The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses. Microorganisms, 8(12), Article 2024. https://doi.org/10.3390/microorganisms8122024

Lin, S., Liu, H., Svenningsen, E. B., Wollesen, M., Jacobsen, K. M., Andersen, F. D., Moyano-Villameriel, J., Pedersen, C. N., Nørby, P., Tørring, T. & Poulsen, T. B. (2021). Expanding the antibacterial selectivity of polyether ionophore antibiotics through diversity-focused semisynthesis. Nature Chemistry, 13(1), 47-55. https://doi.org/10.1038/s41557-020-00601-1

Dai, R., Eser, B. E. & Guo, Z. (2021). Beyond flower-like structure – The synergy within Pd/Ni-Al hydrotalcite for base-free oxidation of benzyl alcohols. Applied Catalysis A: General, 610, Article 117972. https://doi.org/10.1016/j.apcata.2020.117972

Cheng, W., Liu, G., Guo, Z., Chen, F. & Cheng, K-W. (2020). Kinetic Study and Degradation Mechanism of Glycidyl Esters in both Palm Oil and Chemical Models during High-Temperature Heating. Journal of Agricultural and Food Chemistry, 68(51), 15319–15326. https://doi.org/10.1021/acs.jafc.0c05515

Feng, L., Ward, A. J., Ambye-Jensen, M. & Møller, H. B. (2021). Pilot-scale anaerobic digestion of by-product liquid (brown juice)from grass protein extraction using an un-heated anaerobic filter. Process Safety and Environmental Protection, 146, 886-892. https://doi.org/10.1016/j.psep.2020.12.026

Sveegaard, S. G. & Kristiansen, R. (2021). Multivariate analysis in the selection of greener solvents for the bromination of 2-cyano-4’-methylbiphenyl. Organic Process Research & Development, 25(1), 68-74. Advance online publication. https://doi.org/10.1021/acs.oprd.0c00326

Tan, S. R. S., Eser, B. E. & Han, J. (2020). Gut Metabolism of Furanocoumarins: Proposed Function of Co O-Methyltransferase. ACS Omega, 5(47), 30696-30703. https://doi.org/10.1021/acsomega.0c04879

Daels, E., Foubert, I., Guo, Z., Thielemans, W. & Goderis, B. (2020). Phase Behavior and Polymorphism of Saturated and Unsaturated Phytosterol Esters. Molecules, 25(23), Article 5727. https://doi.org/10.3390/molecules25235727

Li, J., Ma, Y., Liu, N., Eser, B. E., Guo, Z., Jensen, P. R. & Stephanopolos, G. (2020). Synthesis of high-titer alka(e)nes in Yarrowia lipolytica is enabled by a discovered mechanism. Nature Communications, 11(1), Article 6198 . https://doi.org/10.1038/s41467-020-19995-0

Zou, X., Zhang, H., Pedersen, J. N., Zhang, H., Wang, X., Yang, J., Xu, X. & Guo, Z. (2020). Lipids in Infant Formula. In Bailey's Industrial Oil and Fat Products (pp. 55). Wiley-Blackwell. https://doi.org/10.1002/047167849X.bio112

Jensen, M. B., Jensen, B., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). Integrating H2 injection and reactor mixing for low-cost H2 gas-liquid mass transfer in full-scale in situ biomethanation. Biochemical Engineering Journal, 166, Article 107869. https://doi.org/10.1016/j.bej.2020.107869

Engel, J., Bornscheuer, U. T. & Kara, S. (2021). Kinetics Modeling of a Convergent Cascade Catalyzed by Monooxygenase–Alcohol Dehydrogenase Coupled Enzymes. Organic Process Research and Development, 25(3), 411-420. Advance online publication. https://doi.org/10.1021/acs.oprd.0c00372

Zhong, C., He, Y., Zheng, G. & Chen, B. (2020). 两步法催化鱼油制备MLM型结构三酰甘油酯. Journal of the Chinese Cereals and Oils Association, 35(10), 141-147, 154.

Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S. & Kroutil, W. (2020). Cover Feature: Extending the Library of Light‐Dependent Protochlorophyllide Oxidoreductases and their Solvent Tolerance, Stability in Light and Cofactor Flexibility. ChemCatChem, 12(16), 3958. https://doi.org/10.1002/cctc.202001197

Burapan, S., Kim, M., Paisooksantivatana, Y., Eser, B. E. & Han, J. (2020). Thai Curcuma species: Antioxidant and bioactive compounds. Foods, 9(9), Article 1219. https://doi.org/10.3390/foods9091219

Hansen, N. P., Bitsch, J., Jensen, S. K., Weisbjerg, M. R., Ambye-Jensen, M. & Johansen, M. (2020). Effect of screw pressing and days of regrowth on grass silage characteristics and quality. In P. Virkajärvi, K. Hakala, M. Hakojärvi, J. Helin, I. Herzon, V. Jokela, S. Peltonen, M. Rinne, M. Seppänen & J. Uusi-Kämppä (Eds.), Meeting the future demands for grassland production: Proceedings of the 28th General Meeting of the European Grassland Federation Helsinki, Finland 19-22 October 2020 (pp. 620-622). Wageningen Academic Publishers. https://www.europeangrassland.org/fileadmin/documents/Infos/Printed_Matter/Proceedings/EGF2020.pdf

De Santis, P., Meyer, L-E. & Kara, S. (2020). The Rise of Continuous Flow Biocatalysis – Fundamentals, Very Recent Developments and Future Perspectives. Reaction Chemistry & Engineering , 5(12), 2155-2184. https://doi.org/10.1039/D0RE00335B

Yesiltas, B., Garcia-Moreno, P. J., Sørensen, A-D. M., Soria Caindec, A. M., Hyldig, G., Anankanbil, S., Guo, Z. & Jacobsen, C. (2021). Enrichment of mayonnaise with a high fat fish oil-in-water emulsion stabilized with modified DATEM C14 enhances oxidative stability. Food Chemistry, 341(Part 2), Article 128141. https://doi.org/10.1016/j.foodchem.2020.128141

Schwab, C. (2020). Impact of active learning series on participation and student learning of Food Science Master students. ETH Learning and Teaching Journal, 2(1), 67-81. https://learningteaching.ethz.ch/index.php/lt-eth/article/view/73/41

Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Bodda, C., Narita, R., Cai, Y. ... Paludan, S. R. (2020). Author Correction: STEEP mediates STING ER exit and activation of signaling (Nature Immunology, (2020), 21, 8, (868-879), 10.1038/s41590-020-0730-5). Nature Immunology, 21(11), 1468-1469. https://doi.org/10.1038/s41590-020-0803-5

Zhang, Y., Eser, B. E., Kristensen, P. & Guo, Z. (2020). Fatty acid hydratase for value-added biotransformation: A review. Chinese Journal of Chemical Engineering, 28(8), 2051-2063. https://doi.org/10.1016/j.cjche.2020.02.008

Chanquia, S. N., Huang, L., Garcia Linares, G., Dominguez de Maria, P. & Kara, S. (2020). Deep Eutectic Solvents as Smart Cosubstrate in Alcohol Dehydrogenase-Catalyzed Reductions. Catalysts, 10(9), 1-8. Article 1013. https://doi.org/10.3390/catal10091013

Appert, O., Garcia, A. R., Frei, R., Roduit, C., Constancias, F., Neuzil-Bunesova, V., Ferstl, R., Zhang, J., Akdis, C., Lauener, R., Lacroix, C. & Schwab, C. (2020). Initial butyrate producers during infant gut microbiota development are endospore formers. Environmental Microbiology, 22(9), 3909-3921. Advance online publication. https://doi.org/10.1111/1462-2920.15167

Hjerrild, P., Tørring, T. & Poulsen, T. B. (2020). Dehydration reactions in polyfunctional natural products. Natural Product Reports, 37(8), 1043-1064. https://doi.org/10.1039/d0np00009d

Marietou, A., Kjeldsen, K. U. & Røy, H. (2020). Physicochemical and biological controls of sulfide accumulation in a high temperature oil reservoir. Applied Microbiology and Biotechnology, 104(19), 8467-8478. Advance online publication. https://doi.org/10.1007/s00253-020-10828-0

He, D., Wei, W. & Guo, Z. (2020). Moderate Edible Oil Refining: State-of-the-Art in China. Journal of the American Oil Chemists' Society, 97(11), 1277-1279. Advance online publication. https://doi.org/10.1002/aocs.12407

Hobisch, M., Holtmann, D., Gomes de Santos, P., Alcalde, M., Hollmann, F. & Kara, S. (2021). Recent developments in the use of peroxygenases – Exploring their high potential in selective oxyfunctionalisations. Biotechnology Advances, 51, Article 107615. https://doi.org/10.1016/j.biotechadv.2020.107615

Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S. & Kroutil, W. (2020). Extending the Library of Light‐Dependent Protochlorophyllide Oxidoreductases and their Solvent Tolerance, Stability in Light and Cofactor Flexibility. ChemCatChem, 12(16), 4044-4051. https://doi.org/10.1002/cctc.202000561

Zhang, J., Sturla, S. J., Lacroix, C. & Schwab, C. (2018). Gut microbial glycerol metabolism as an endogenous source of acrolein. mBio (Online), 9(1). https://doi.org/10.1128/mBio.01947-17

Santruckova, H., Kotas, P., Barta, J., Urich, T., Capek, P., Palmtag, J., Alves, R. J. E., Biasi, C., Diakova, K., Gentsch, N., Gittel, A., Guggenberger, G., Hugelius, G., Lashchinsky, N., Martikainen, P. J., Mikutta, R., Schleper, C., Schnecker, J., Schwab, C. ... Richter, A. (2018). Significance of dark CO2 fixation in arctic soils. Soil Biology and Biochemistry, 119, 11-21. https://doi.org/10.1016/j.soilbio.2017.12.021

Bengtsson, M., Wagner, K., Schwab, C., Urich, T. & Battin, T. J. (2018). Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels. Molecular Ecology, 27(14), 2913-2925. https://doi.org/10.1111/mec.14696

Bircher, L., Geirnaert, A., Hammes, F., Lacroix, C. & Schwab, C. (2018). Effect of cryopreservation and lyophilization on viability and growth of strict anaerobic human gut microbes. Microbial Biotechnology, 4(4), 721-733. https://doi.org/10.1111/1751-7915.13265

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AU Engineering