Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Gruenberg, M., Irla, M., Myllek, S. & Draths, K. (2021). Characterization of two 3-deoxy-D-Arabino-Heptulosonate 7-phosphate synthases from Bacillus methanolicus. Protein Expression and Purification, 188, Article 105972. https://doi.org/10.1016/j.pep.2021.105972

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Article e202101625. https://doi.org/10.1002/cctc.202101625

Meyer, J., Meyer, L-E. & Kara, S. (2022). Enzyme immobilization in hydrogels: A perfect liaison for efficient and sustainable biocatalysis. Engineering in Life Sciences, 22(3-4), 165-177. https://doi.org/10.1002/elsc.202100087

Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), Article e202100606. Advance online publication. https://doi.org/10.1002/cbic.202100606

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2022). The use of treatment wetlands plants for protein and cellulose valorization in biorefinery platform. Science of the total Environment, 810, Article 152376. https://doi.org/10.1016/j.scitotenv.2021.152376

Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, Article 780092. https://doi.org/10.3389/fmicb.2021.780092

Harada, L. K., Silva, E. C., Rossi, F. P. N., Cieza, B., Oliveira, T. J., Pereira, C., Tomazetto, G., Silva, B. B., M. Squina, F., Vila, M. M. D. C., Setubal, J., Ha, T., da Silva, A. M. & Balcao, V. M. (2022). Characterization and in vitro testing of newly isolated lytic bacteriophages for the biocontrol of Pseudomonas aeruginosa. Future Microbiology, 17(2), 111-141. https://doi.org/10.2217/fmb-2021-0027

Møller, A. H., Hammershøj, M., Hachow Motta dos Passos, N., Tanambell, H., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Danielsen, M., Jensen, S. K. & Dalsgaard, T. K. (Ed.) (2021). Biorefinery of Green Biomass─How to Extract and Evaluate High Quality Leaf Protein for Food? Journal of Agricultural and Food Chemistry, 69(48), 14341-14357. https://doi.org/10.1021/acs.jafc.1c04289

Bittner, J. P., Zhang, N., Huang, L., Domínguez de María, P., Jakobtorweihen, S. & Kara, S. (2022). Impact of deep eutectic solvents (DESs) and individual DES components on alcohol dehydrogenase catalysis: Connecting experimental data and molecular dynamics simulations. Green Chemistry, 24(3), 1120-1131. https://doi.org/10.1039/D1GC04059F

Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H₂ conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, Article 100876. https://doi.org/10.1016/j.biteb.2021.100876

Alvarez, M. V., Bambace, M. F. & del Rosario Moreira, M. (2019). Arándanos como alternativa no láctea en alimentos funcionales. Editorial Académica Española. EAE. https://www.eae-publishing.com/catalog/details/store/gb/book/978-620-0-33162-5/ar%C3%A1ndanos-como-alternativa-no-l%C3%A1ctea-en-alimentos-funcionales

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2021). Ready-to-eat blueberries as fruit-based alternative to deliver probiotic microorganisms and prebiotic compounds. LWT, 142, Article 111009. https://doi.org/10.1016/j.lwt.2021.111009

Bambace, M. F., del Rosario Moreira, M., Sánchez-Moreno, C. & De Ancos, B. (2021). Effects of combined application of high-pressure processing and active coatings on phenolic compounds and microbiological and physicochemical quality of apple cubes. Journal of the Science of Food and Agriculture, 101(10), 4256-4265. https://doi.org/10.1002/jsfa.11065

Alvarez, M. V., Bambace, M. F., Quintana, G., Gomez-Zavaglia, A. & del Rosario Moreira, M. (2021). Prebiotic-alginate edible coating on fresh-cut apple as a new carrier for probiotic lactobacilli and bifidobacteria. LWT, 137, Article 110483. https://doi.org/10.1016/j.lwt.2020.110483

Bambace, M. F., Alvarez, M. V. & del Rosario Moreira, M. (2019). Novel functional blueberries: Fructo-oligosaccharides and probiotic lactobacilli incorporated into alginate edible coatings. Food Research International, 122, 653-660. https://doi.org/10.1016/j.foodres.2019.01.040

Bambace, M. F., V. Alvarez, M. & del Rosario Moreira, M. (2019). Prebiotic edible coatings with biopreservatives: Quality and safety of fresh apple cubes. Journal of Food Process Engineering, 42(2), Article e12971. https://doi.org/10.1111/jfpe.12971

Bambace, M. F., Gerard, L. M. & del Rosario Moreira, M. (2018). An approach to improve the safety and quality of ready-to-eat blueberries. Journal of Food Safety, 39(2), Article e12602. https://doi.org/10.1111/jfs.12602

Chanquia, S. N., Vernet Armengol, G. & Kara, S. (2022). Photobioreactors for cultivation and synthesis: Specifications, challenges, and perspectives. Engineering in Life Sciences, 22(12), 712-724. Advance online publication. https://doi.org/10.1002/elsc.202100070

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Biller, P., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2021). Production of high-value bio-resources from treatment wetland biomass. Abstract from WETPOL 2021: 9th International Symposium on Wetland Pollutants Dynamics and Control, Vienna, Austria.

Sonnenberg-Riethmacher, E., Miehe, M. & Riethmacher, D. (2021). Periostin in Allergy and Inflammation. Frontiers in Immunology, 12, Article 722170. https://doi.org/10.3389/fimmu.2021.722170

Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), Article 106390. https://doi.org/10.1016/j.jece.2021.106390

Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), Article 9295. https://doi.org/10.3390/su13169295

Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in applied microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004

Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. Advance online publication. https://doi.org/10.1038/s41396-021-01061-2

Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, Article 117528. https://doi.org/10.1016/j.watres.2021.117528

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Article 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

Jørgensen, U., Kristensen, T., Jørgensen, J. R., Kongsted, A. G., De Notaris, C., Nielsen, C., Mortensen, E. Ø., Ambye-Jensen, M., Jensen, S. K., Stødkilde-Jørgensen, L., Dalsgaard, T. K., Møller, A. H., Grøn Sørensen, C., Asp, T., Lehmann Olsen, F. & Gylling, M. (2021). Green biorefining of grassland biomass. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 193 https://dcapub.au.dk/djfpublikation/index.asp?action=show&id=1480

Liang, N., Neužil-Bunešová, V., Tejnecký, V., Gänzle, M. & Schwab, C. (2021). 3-Hydroxypropionic acid contributes to the antibacterial activity of glycerol metabolism by the food microbe Limosilactobacillus reuteri. Food Microbiology, 98, Article 103720. https://doi.org/10.1016/j.fm.2020.103720

Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K. (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. International Journal of Systematic and Evolutionary Microbiology, 71(3), Article 004673. https://doi.org/10.1099/ijsem.0.004673

Zhang, Z., Cui, L., Zhang, Y., Klausen, L. H., Chen, M., Sun, D., Xu, S., Kang, S. & Shi, J. (2021). Regulation of carboxyl groups and structural defects of graphitic carbon nitride via environmental-friendly glucose oxidase ring-opening modulation. Applied Catalysis B: Environmental, 297, Article 120441. https://doi.org/10.1016/j.apcatb.2021.120441

Jensen, M. B., Poulsen, S., Jensen, B., Feilberg, A. & Kofoed, M. V. W. (2021). Selecting carrier material for efficient biomethanation of industrial biogas-CO₂ in a trickle-bed reactor. Journal of CO2 Utilization, 51, Article 101611. https://doi.org/10.1016/j.jcou.2021.101611

Bittner, J. P., Huang, L., Zhang, N., Kara, S. & Jakobtorweihen, S. (2021). Comparison and Validation of Force Fields for Deep Eutectic Solvents in Combination with Water and Alcohol Dehydrogenase. Journal of Chemical Theory and Computation, 17(8), 5322-5341. Advance online publication. https://doi.org/10.1021/acs.jctc.1c00274

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C. & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Stenderup, K. & Overby, S. S. (2021). Oral Group Examination Method to Evaluate Collaborative and Individual Learning. In J. Bennedsen, K. Edström, M. S. Gudjonsdottir, I. Sæmundsdóttir, N. Kuptasthien, J. Roslöf & A. Sripakagorn (Eds.), The 17th International CDIO Conference: Proceedings - Full Papers (pp. 630-644) http://www.cdio2021.chula.ac.th/download/CDIO2021_proceeding.pdf

Hobisch, M., Spasic, J., Malihan-Yap, L., Barone, G. D., Castiglione, K., Tamagnini, P., Kara, S. & Kourist, R. (2021). Internal Illumination to Overcome the Cell Density Limitation in the Scale-up of Whole-cell Photobiocatalysis. ChemSusChem, 14(15), 3219-3225. https://doi.org/10.1002/cssc.202100832

Zhang, N., Steininger, F., Meyer, L-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. Advance online publication. https://doi.org/10.1021/acssuschemeng.1c03547

Petermeier, P., Fortuna, C., M. Hübschmann, K., Nahuel Bidart Costoya, G., Tørring, T., Teze, D., Welner, D. H. & Kara, S. (2021). Exploring the in Vitro Operating Window of Glycosyltransferase PtUGT1 from Polygonum tinctorium for a Biocatalytic Route to Indigo Dye. ACS Sustainable Chemistry & Engineering, 9(25), 8497-8506. Advance online publication. https://doi.org/10.1021/acssuschemeng.1c01536

Aryal, N., Ottosen, L. D. M., Kofoed, M. V. W. & Pant, D. (Eds.) (2021). Emerging Technologies and Biological Systems for Biogas Upgrading. (1 ed.) Academic Press. https://www.elsevier.com/books/emerging-technologies-and-biological-systems-for-biogas-upgrading/aryal/978-0-12-822808-1

Aryal, N., Ottosen, L. D. M., Bentien, A., Pant, D. & Kofoed, M. V. W. (2021). Bioelectrochemical systems for biogas upgrading and biomethane production. In N. Aryal, L. D. Mørck Ottosen, M. Vedel Wegener Kofoed & D. Pant (Eds.), Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 363-382). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00013-1

Zong, L., Zhang, Y., Shao, Z., Wang, Y., Guo, Z., Gao, R. & Eser, B. E. (2021). Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids. Catalysts, 11(6), Article 665. https://doi.org/10.3390/catal11060665

Jensen, M. B., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). H₂ gas-liquid mass transfer: A key element in biological Power-to-Gas methanation. Renewable & Sustainable Energy Reviews, 147, Article 111209. https://doi.org/10.1016/j.rser.2021.111209

Jensen, M. B., de Jonge, N., Dolriis, M. D., Kragelund, C., Holst Fischer, C., Eskesen, M., Noer, K. W., Møller, H. B., Ottosen, L. D. M., Nielsen, J. L. & Kofoed, M. V. W. (2021). Cellulolytic and Xylanolytic Microbial Communities Associated With Lignocellulose-Rich Wheat Straw Degradation in Anaerobic Digestion. Frontiers in Microbiology, 12, Article 645174. https://doi.org/10.3389/fmicb.2021.645174

Granato, D. C., X. Neves, L., D. Trino, L., M. Carnielli, C., F. B. Lopes, A., Yokoo, S., A. Pauletti, B., R. Domingues, R., O. Sa, J., Persinoti, G., A. A. Paixao, D., Rivera, C., M. de Sa Patroni, F., Tomazetto, G., R. Santos-Silva, A., A. Lopes, M., de Castro jr., G., B. Brandao, T., Prado-Ribeiro, A. C. ... Paes Leme, A. F. (2021). Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients. Biochimica et Biophysica Acta - Proteins and Proteomics, 1869(8), Article 140659. https://doi.org/10.1016/j.bbapap.2021.140659

Alvaredo Paixão, D. A., Tomazetto, G., Ramos Sodré, V., Gonçalves, T., AkemiUchima, C., Büchli, F., Alvarez, T. M., Felix Persinoti, G., da Silva, M. J., Bragatto, J., Liberato, M. V., Franco Cairo, J. P. L., Paes Leme, A. F. & Marcio Squina, F. (2021). Microbial enrichment and meta-omics analysis identify CAZymes from mangrove sediments with unique properties. Enzyme and Microbial Technology, 148, Article 109820. https://doi.org/10.1016/j.enzmictec.2021.109820

Li, Z., Zhang, Y., Anankanbil, S. & Guo, Z. (2021). Applications of nanocellulosic products in food: Manufacturing processes, structural features and multifaceted functionalities. Trends in Food Science & Technology, 113, 277-300. https://doi.org/10.1016/j.tifs.2021.03.027

Stødkilde, L., Ambye-Jensen, M. & Jensen, S. K. (2021). Biorefined organic grass-clover protein concentrate for growing pigs: Effect on growth performance and meat fatty acid profile. Animal Feed Science and Technology, 276, Article 114943. https://doi.org/10.1016/j.anifeedsci.2021.114943

Kofoed, M. V. W., Jensen, M. B. & Ottosen, L. D. M. (2021). Biological upgrading of biogas through CO2 conversion to CH4. In Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 321-362). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00012-X

Meyer, L-E., Eser, B. E. & Kara, S. (2021). Coupling light with biocatalysis for sustainable synthesis – very recent developments and future perspectives. Current Opinion in Green and Sustainable Chemistry, 31, Article 100496. https://doi.org/10.1016/j.cogsc.2021.100496

Lopes de Figueiredo, F., Piva de Oliveira, A. C., Fanchini Terrasan, C. R., Gonçalves, T. A., Gerhardt, J. A., Tomazetto, G., Felix Persinoti, G., Ventura Rubio, M., Andrea Tamayo Peña, J., Fernandes Araújo, M., de Carvalho Silvello, M. A., Teixeira Franco, T., Cândida Rabelo, S., Marcio Squina, F. & Damasio, A. (2021). Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600. Biotechnology for Biofuels, 14(1), Article 96. https://doi.org/10.1186/s13068-021-01945-7

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Revised 21.03.2023

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