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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Marietou, A., Schmidt, J. S., Rasmussen, M. R., Scoma, A., Rysgaard, S. & Vergeynst, L. (2023). The effect of hydrostatic pressure on the activity and community composition of hydrocarbon-degrading bacteria in Arctic seawater. Applied and Environmental Microbiology, 89(11), Article e0098723. https://doi.org/10.1128/aem.00987-23

Zoppi, G., Andrade, T. A., Ward, A. J., Ambye-Jensen, M. & Biller, P. (2023). Biorefinery integration of a green protein platform for maximum resource utilization. Cleaner and Circular Bioeconomy, 6, Article 100064. https://doi.org/10.1016/j.clcb.2023.100064

Sieborg, M. U., Engelbrecht, N., Ottosen, L. D. M. & Kofoed, M. V. W. (2024). Sunshine-to-fuel: Demonstration of coupled photovoltaic-driven biomethanation operation, process, and techno-economical evaluation. Energy Conversion and Management, 299, Article 117767. https://doi.org/10.1016/j.enconman.2023.117767

Schweigerdt, A., D. Stöbener, D., Schäfer, A., Kara, S. & Weinhart, M. (2023). Impact of Amphiphilicity Balance in Hydroxy-Functional, Isomeric, Thermoresponsive Poly(meth)acrylates. Macromolecules, 8602-8613. https://doi.org/10.1021/acs.macromol.3c01251

Allan Andrade, T., Ramírez-Márquez, C. & Ambye-Jensen, M. (2023). Process simulation of an integrated green protein biorefinery using nanofiltration membrane and ethanol fermentation. Separation and Purification Technology, 327, Article 124887. https://doi.org/10.1016/j.seppur.2023.124887

Chan, S. W. S., Marami, H., Tayo, L. L., Fog, E., Andrade, T. A., Ambye-Jensen, M., Birkved, M. & Khoshnevisan, B. (2024). Environmental impacts of a novel biorefinery platform integrated with power-to-protein technology to decrease dependencies on soybean imports. Science of the Total Environment, 907, Article 167943. https://doi.org/10.1016/j.scitotenv.2023.167943

Choi, J., Kim, Y., Eser, B. E. & Han, J. (2023). Theoretical study on the glycosidic C-C bond cleavage of 3''-oxo-puerarin. Scientific Reports, 13(1), Article 16282. https://doi.org/10.1038/s41598-023-43379-1

Shen, W., A. Dalby, P., Guo, Z., Li, W., Zhu, C. & Fan, D. (2023). Residue Effect-Guided Design: Engineering of S. Solfataricus β-Glycosidase to Enhance Its Thermostability and Bioproduction of Ginsenoside Compound K. Journal of Agricultural and Food Chemistry, 71(44), 16669–16680. https://doi.org/10.1021/acs.jafc.3c04575

Ramirez Garcia, A., Greppi, A., Constancias, F., Ruscheweyh, H.-J., Gasser, J., Hurley, K., Sturla, S. J., Schwab, C. & Lacroix, C. (2023). Anaerobutyricum hallii promotes the functional depletion of a food carcinogen in diverse healthy fecal microbiota. Frontiers in Microbiomes, 2, Article 1194516. https://doi.org/10.3389/frmbi.2023.1194516

Høgsgaard, K., Vidal, N. P., Marietou, A., Fiehn, O. G., Li, Q., Bechtner, J., Catalano, J., Martinez, M. M. & Schwab, C. (2023). Fucose modifies short chain fatty acid and H2S formation through alterations of microbial cross-feeding activities. FEMS Microbiology Ecology, 99(10), Article fiad107. https://doi.org/10.1093/femsec/fiad107

Mathiasen, S. S., Ploug Frydenberg, R., Kleinert, M., Kiens, B., Guo, Z. & Wiking, L. (2023). Novel milk fat fractions for health and functionality obtained by short path distillation.

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Mitigation of methane emission from pig slurry storage with sodium dodecyl sulfate and hydrogen peroxide treatments. 222. Poster session presented at RAMIRAN, Cambridge, United Kingdom.

Yesiltas, B., Garcia-Moreno, P. J., Sørensen, A.-D. M., Banerjee, C., Anankanbil, S., Guo, Z., Ogilby, P. R. & Jacobsen, C. (2023). The Use of Soy and Egg Phosphatidylcholines Modified with Caffeic Acid Enhances the Oxidative Stability of High-Fat (70%) Fish Oil-in-Water Emulsions. Colloids and Interfaces , 7(3), Article 60. https://doi.org/10.3390/colloids7030060

Dalby, F. R., Ambrose, H. W., Poulsen, J. S., Nielsen, J. J. L. & Adamsen, A. P. S. (2023). Pig slurry organic matter transformation and methanogenesis at ambient storage temperatures. Journal of Environmental Quality, 52(6), 1139-1151. https://doi.org/10.1002/jeq2.20512

Domínguez de María, P., Kara, S. & Gallou, F. (2023). Biocatalysis in Water or in Non-Conventional Media? Adding the CO2 Production for the Debate. Molecules, 28(18), Article 6452. https://doi.org/10.3390/molecules28186452

Huertas-Díaz, L., Kyhnau, R., Ingribelli, E., Neuzil-Bunesova, V., Li, Q., Sasaki, M., Lauener, R. P., Roduit, C., Frei, R., CK-CARE study group, Sundekilde, U. & Schwab, C. (2023). Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces. Gut Microbes, 15(1), Article 2241209. https://doi.org/10.1080/19490976.2023.2241209

Sieborg, M. U. (2023). Giving CO2 a second chance: Optimization and integration of the biomethanation technology platform. Aarhus University - Department of Biological and Chemical Engineering.

Pourjafar, M., Saidijam, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2023). Surfaceome Profiling Suggests Potential of Anti-MUC1×EGFR Bispecific Antibody for Breast Cancer Targeted Therapy. Journal of Immunotherapy, 46(7), 245-261. https://doi.org/10.1097/CJI.0000000000000482

Gylling, M., Nord-Larsen, T., Bruhn, A., Thomsen, M., Ambye-Jensen, M., Mortensen, E. Ø. & Jørgensen, U. (2023). Potential Danish biomass production and utilization in 2030. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA Report No. 219 https://dcapub.au.dk/djfpublikation/djfpdf/DCArapport219.pdf

Tesson, S. V. M., Barbato, M. & Rosati, B. (2023). Aerosolization flux, bio-products, and dispersal capacities in the freshwater microalga Limnomonas gaiensis (Chlorophyceae). Communications Biology, 6(1), Article 809. https://doi.org/10.1038/s42003-023-05183-5

Vaupel, S., Mau, R., Kara, S., Seitz, H., Kragl, U. & Meyer, J. (2023). 3D printed and stimulus responsive drug delivery systems based on synthetic polyelectrolyte hydrogels manufactured via digital light processing. Journal of Materials Chemistry B, 28(11), 6547-6559. https://doi.org/10.1039/D3TB00285C

De Santis, P., Wegstein, D., O. Burek, B., Patzsch, J., Alcalde, M., Kroutil, W., Z. Bloh, J. & Kara, S. (2023). Robust Light Driven Enzymatic Oxyfunctionalization Via Immobilization of Unspecific Peroxygenase. ChemSusChem, 16(23), Article e202300613. https://doi.org/10.1002/cssc.202300613

Röllig, R., Paul, C. E., Rousselot-Pailley, P., Kara, S. & Alphand, V. (2023). Hybrid catalysis for enantioselective Baeyer-Villiger oxidation and stereoselective epoxidation: A Cp*Ir complex to fuel FMN and FAD reduction for flavoprotein monooxygenase modules. Reaction Chemistry & Engineering , 8(12), 3117-3123. https://doi.org/10.1039/d3re00411b

Jopp, S., Fleischhammer, T., Lavrentieva, A., Kara, S. & Meyer, J. (2023). Synthesis, biocompatibility, and antimicrobial properties of glucose-based ionic liquids. RSC Sustainability, 1(7), 1751-1764. https://doi.org/10.1039/d3su00191a

Arana Juve, J. M., Baami González, X., Bai, L., Xie, Z., Shang, Y., Saad, A., Gonzalez-Olmos, R., Wong, M. S., Ateia, M. & Wei, Z. (2024). Size-selective trapping and photocatalytic degradation of PFOA in Fe-modified zeolite frameworks. Applied Catalysis B: Environmental, 349, Article 123885. https://doi.org/10.1016/j.apcatb.2024.123885

Zong, L., Zhang, Y., Shao, Z., Ljubic, A., Jacobsen, C., Gao, R., Eser, B. E., Wang, Y., Wang, Y. & Guo, Z. (2023). Selective and Sustainable Production of Sub-terminal Hydroxy Fatty Acids by a Self-Sufficient CYP102 Enzyme from Bacillus Amyloliquefaciens. ChemBioChem, 24(18), Article e202300368. https://doi.org/10.1002/cbic.202300368

Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y.-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W., Andersen, G. R. & Guo, Z. (2023). Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation. Journal of Hazardous Materials, 458, Article 131986. https://doi.org/10.1016/j.jhazmat.2023.131986

Sieborg, M. U., Ottosen, L. D. M. & Kofoed, M. V. W. (2023). Enhanced process control of trickle-bed reactors for biomethanation by vertical profiling directed by hydrogen microsensor monitoring. Bioresource Technology, 384, Article 129242. https://doi.org/10.1016/j.biortech.2023.129242

Ye, S., Cheng, Y., Guo, Z., Wang, X. & Wei , W. (2023). A Lipid Toolbox of Sugar Alcohol Fatty Acid Monoesters for Single-component Lipid Nanoparticles with Temperature-controlled Release. Colloids and Surfaces B: Biointerfaces, 228, Article 113426. https://doi.org/10.1016/j.colsurfb.2023.113426

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology Spectrum, 11(4), Article e0062523. https://doi.org/10.1128/spectrum.00625-23

Bogojevic, O., Zhang, Y., Daugaard Wolff, C., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2023). A sustainable and regioselective synthesis of Hemi-bis(monoacylglycero)phosphates and bis(diacylglycero)phosphates. iScience, 26(7), Article 107075. https://doi.org/10.1016/j.isci.2023.107075

Ng, K. S., Bambace, M. F. & Schwab, C. (2023). Microbially-produced short chain carboxylic acids are ancient food biopreservatives with complex mode of action. Current Opinion in Food Science, 52, Article 101066. https://doi.org/10.1016/j.cofs.2023.101066

Ambye-Jensen, M., (2022). Arealanvendelse og bioøkonomi. Synergier og systemgevinster ved ændret arealanvendelse og bioraffinering, No. 2022-0340167 / 2020-0114173, 34 p., Feb 11, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Gaffey, J., Rajauria, G., McMahon, H., Ravindran, R., Dominguez, C., Ambye-Jensen, M., Souza, M. F., Meers, E., Aragonés, M. M., Skunca, D. & Sanders, J. P. M. (2023). Green Biorefinery systems for the production of climate-smart sustainable products from grasses, legumes and green crop residues. Biotechnology Advances, 66, Article 108168. https://doi.org/10.1016/j.biotechadv.2023.108168

Munoz Duarte, L. D. & Philips, J. (2023). No acetogen is equal: Strongly different H₂ thresholds reflect diverse bioenergetics in acetogenic bacteria. Environmental Microbiology, 25(10), 2032-2040. https://doi.org/10.1111/1462-2920.16429

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2023). Coupler les avantages des cultures herbagères et du bioraffinage vert pour produire des protéines, des matériaux et des services pour la transition écologique. Fourrages , 253, 47-60.

Feilberg, A., Ambrose, H. W., Dalby, F. R. & Kofoed, M. V. W. (2023). Residual slurry treatment combined with weekly discharge: Elimination of in-house methane emission in livestock facilities. Abstract from Agri Food and Climate Circle 2023, København, Denmark.

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Additives and methods for the mitigation of methane emission from stored liquid manure. Biosystems Engineering, 229, 209-245. https://doi.org/10.1016/j.biosystemseng.2023.03.015

Klein, V. J., Brito, L. F., Perez-Garcia, F., Brautaset, T. & Irla, M. (2023). Metabolic engineering of thermophilic Bacillus methanolicus for riboflavin overproduction from methanol. Microbial Biotechnology, 16(5), 1011-1026. https://doi.org/10.1111/1751-7915.14239

Alphand, V., van Berkel, W. J. H., Jurkas, V., Kara, S., Kourist, R., Kroutil, W., Mascia, F., M. Nowaczyk, M., Paul, C. E., Schmidt, S., Spasic, J., Tamagnini, P. & Winkler, C. K. (2023). Exciting Enzymes: Current State and Future Perspective of Photobiocatalysis. ChemPhotoChem, 7(7), Article e202200325. https://doi.org/10.1002/cptc.202200325

Gao, P., Zhang, X., Huang, X., Chen, Z., Marietou, A., Holmkvist, L., Qu, L., Finster, K. & Gong, X. (2023). Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. BMC Genomics, 24(1), Article 209. https://doi.org/10.1186/s12864-023-09297-2

Semproli, R., Chanquia, S. N., Bittner, J. P., Müller, S., Domínguez de María, P., Kara, S. & Ubiali, D. (2023). Deep Eutectic Solvents for the Enzymatic Synthesis of Sugar Esters: A Generalizable Strategy? ACS Sustainable Chemistry & Engineering, 11(15), 5926-5936. https://doi.org/10.1021/acssuschemeng.2c07607

Meyer, L.-E., Horvath, D., Vaupel, S., Meyer, J., Alcalde, M. & Kara, S. (2023). A 3D printable synthetic hydrogel as an immobilization matrix for continuous synthesis with fungal peroxygenases. Reaction Chemistry & Engineering , 8(5), 984-988. https://doi.org/10.1039/d3re00058c

Svenningsen, E. B., Ottosen, R. N., Jørgensen, K. H., Nisavic, M., Larsen, C. K., Hansen, B. K., Wang, Y., Lindorff-Larsen, K., Tørring, T., Hacker, S. M., Palmfeldt, J. & Poulsen, T. B. (2022). The covalent reactivity of functionalized 5-hydroxy-butyrolactams is the basis for targeting of fatty acid binding protein 5 (FABP5) by the neurotrophic agent MT-21. RSC Chemical Biology, 3(10), 1216-1229. https://doi.org/10.1039/d2cb00161f

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. Århus Universitet.

Li, Z., Zhang, G., Charalampopoulos, D. & Guo, Z. (2023). Ionic liquid-mediated regeneration of cellulose dramatically improves decrystallization, TEMPO-mediated oxidation and alkyl/alkenyl succinylation. International Journal of Biological Macromolecules, 236, Article 123983. https://doi.org/10.1016/j.ijbiomac.2023.123983

Xiong, X., Shang, Y., Bai, L., Luo, S., Seviour, T. W., Guo, Z., Ottosen, L. D. M. & Wei, Z. (2023). Complete Defluorination of Perfluorooctanoic Acid (PFOA) by Ultrasonic Pyrolysis Towards Zero Fluoro-Pollution. Water Research, 235, Article 119829. https://doi.org/10.1016/j.watres.2023.119829

Santner, P., Chanquia, S. N., Petrovai, N., Vig Benfeldt, F., Kara, S. & Eser, B. E. (2023). Biocatalytic Conversion of Fatty Acids into Drop-in Biofuels: Towards Sustainable Energy Sources. EFB Bioeconomy Journal, 3, Article 100049. https://doi.org/10.1016/j.bioeco.2023.100049

Milic, M., Domínguez de María, P. & Kara, S. (2023). A patent survey on the biotechnological production of 2,5-furandicarboxylic acid (FDCA): Current trends and challenges. EFB Bioeconomy Journal, 3, Article 100050. https://doi.org/10.1016/j.bioeco.2023.100050

Vernet, G., Ma, Y., Zhang, N. & Kara, S. (2023). Cross-linked enzyme aggregates of fusion enzymes in microaqueous organic media. ChemBioChem, 24(8), Article e202200794. https://doi.org/10.1002/cbic.202200794

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