Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Rohbohm, N. & Angenent, L. T. (2025). A development study for liquid- and vapor-fed anode zero-gap bioelectrolysis cells. iScience, 28(7), Artikel 112959. https://doi.org/10.1016/j.isci.2025.112959

Klein, V. J., Troøyen, S. H., Brito, L. F., Courtade, G., Brautaset, T. & Irla, M. K. (2024). Identification and characterization of a novel formaldehyde dehydrogenase in Bacillus subtilis. Applied and Environmental Microbiology, 90(11). https://doi.org/10.1128/aem.02181-23

Irla, M., Nærdal, I., Virant, D., Brautaset, T., Busche, T., Goranovič, D., Haupka, C., Heux, S., Kosec, G., Rückert-Reed, C., Wendisch, V. F., Brito, L. F. & Vicente, C. M. (2025). Systems-level analysis provides insights on methanol-based production of L-glutamate and its decarboxylation product γ-aminobutyric acid by Bacillus methanolicus. Metabolic Engineering, 91, 389-404. https://doi.org/10.1016/j.ymben.2025.06.002

Stødkilde, L., Jensen, M. S., Jørgensen, E. T., Ambye-Jensen, M. & Eskildsen, M. (2025). Grass-based feeding strategies for organic growing-finishing pigs during temperate summer conditions. Livestock Science, 298, Artikel 105748. https://doi.org/10.1016/j.livsci.2025.105748

Alamia, A., Ambrose, H. W. & Rattigan, E. (2025). Techno-Economic Integration of Power-to-X Methanation in Biogas Systems: System-Level Optimization Based on Experimental Research. Poster-session præsenteret på 33rd European Biomass Conference & Exhibition , Valencia, Spanien.

Ambrose, H. W., Engelbrecht, N., Alamia, A. & Kofoed, M. V. W. (2025). Biomethanation With Renewable Energy: Harnessing the Carbon-Water-Energy Nexus. Abstract fra 33rd European Biomass Conference & Exhibition , Valencia, Spanien.

Plesner, T. J., Wang, F., Ouyang, Y., Khazaee, Z., Zhou, P., Zhang, M., Eser, B. E., Zhang, Y. & Guo, Z. (2025). Cooperative action from Cu-centered MOF and a laccase for enhanced decolorization of synthetic dyes. Biochemical Engineering Journal, 221, 1-10. Artikel 109807. https://doi.org/10.1016/j.bej.2025.109807

Mathiasen, S. S., Guo, Z., Fritzen, A. M., Kiens, B., Kleinert, M. & Wiking, L. (2025). Physical properties and stability of milk fat retentate fraction from short-path distillation. International Dairy Journal, 169, Artikel 106310. https://doi.org/10.1016/j.idairyj.2025.106310

Sieborg, M. U. (2023). Giving CO2 a second chance. [Ph.d.-afhandling, Aarhus Universitet]. Aarhus University - Department of Biological and Chemical Engineering.

Tørring, T. (2011). Controlling Function and Structure with DNA.

Falkeborg, M. (2015). Development of Innovative Ingredients for Improved Microencapsulation. River Publishers.

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. [Ph.d.-afhandling, Aarhus Universitet]. Aarhus Universitet.

Paz, L.-C. (2016). Beneficial Bacterial Symbionts of Earthworms: Insights into Symbiont Transmission and Metabolic Impact on their Host.

Ambye-Jensen, M. (2014). Ensiling as pretreatment of grass for lignocellulosic biomass conversion.

Kofoed, M. (2010). Diversity and Regulation of Nitrate-Reducing and Denitrifying Bacteria in Aquatic Systems. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Sørensen, M. F., Andrade, T. A., dos Passos, N. H. M. & Ambye-Jensen, M. (2025). Influence of substrate concentration on single-cell protein production from green biorefinery residual juice. Bioresource Technology Reports, 30, Artikel 102151. https://doi.org/10.1016/j.biteb.2025.102151

Wijesooriya, M. M., Vithanage, M. & Wijesekara, H. (2025). Underestimated Threats: Personal Care Products (PCPs) in Marine and Coastal Environments. I M. Vithanage, S. M. Samarasekara, B. D. James & C. M. Reddy (red.), Coastal and Marine Pollution: Source to Sink, Mitigation and Management (s. 225-248). Wiley. https://doi.org/10.1002/9781394237029.ch12

Sieborg, M. U. & Kofoed, M. V. W. (2025). Gamle processer, nye muligheder: Nyt kemisk-biologisk koncept til CO2-fangst og omdannelse. Dansk Kemi, 106(2), 12-14. Artikel 106. https://ipaper.ipapercms.dk/TechMedia/DanskKemi/2025/2/?page=12

Ouyang, Y., Zhang, C., Wang, J., Guo, Z., Wang, Z. & Dong, M. (2025). Gate-Tunable Dual-Mode Optoelectronic Device for Self-Powered Photodetector and Optoelectronic Synapse. Advanced Science, 12(17), Artikel 2416259. https://doi.org/10.1002/advs.202416259

Tvilum, M., Lutz, C. M., Knap, M. M., Hoffmann, L., Khalil, A. A., Holt, M. I., Kandi, M., Schmidt, H. H., Appelt, A. L., Alber, M. & Møller, D. S. (2023). Different benefits of adaptive radiotherapy for different histologies of NSCLC. Acta Oncologica, 62(11), 1426-1432. https://doi.org/10.1080/0284186X.2023.2260944

Lærke, H. N., Jensen, S. K., Andrade, T. A., Ambye-Jensen, M., Jørgensen, E. T. & Stødkilde, L. (2025). Towards efficient grass-clover biorefining: Influence of harvesting methods and delayed processing. Animal Feed Science and Technology, 324, Artikel 116336. https://doi.org/10.1016/j.anifeedsci.2025.116336

Huertas-Díaz, L., Vestergaard, L. G., Marietou, A., Irla, M., Behr, J., Somoza, M. M., Feilberg, A. & Schwab, C. (2025). Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens. Gut Pathogens, 17(1), Artikel 23. https://doi.org/10.1186/s13099-025-00689-1

Ma, Y., Bittner, J. P., Vernet, G., Zhang, N. & Kara, S. (2025). Linkers in Action: Exploring Fusion Enzymes for Oxyfunctionlizations in Non-Conventional Media Through Experiments and Simulations. ChemCatChem, 17(9), Artikel e202401893. https://doi.org/10.1002/cctc.202401893

Milić, M., Vernet, G., Le, H. Y., Zhang, N., Byström, E., Domínguez de María, P. & Kara, S. (2025). Assessing the Industrial Edge of the Lipase-Mediated Oxidation of 2,5-Diformylfuran to 2,5-Furandicarboxylic Acid: Rotating Bed Reactors, an “Acyl-Donor-Free” Oxidation Concept, and Environmental Aspects. Organic Process Research and Development, 29(4), 1058-1066. https://doi.org/10.1021/acs.oprd.4c00474

Zhang, N., Lahmann, V., Bittner, J. P., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2025). Redox Biocatalysis in Lidocaine-Based Hydrophobic Deep Eutectic Solvents: Non-Conventional Media Outperform Aqueous Conditions. ChemSusChem, 18(6), Artikel e202402075. https://doi.org/10.1002/cssc.202402075

Xie, J., Veigel, M., Schmidt, H. & Gänzle, M. (2025). Selection of Bacillus spp. as fermentation cultures for production of plant-based cheese analogues. International Journal of Food Microbiology, 435, Artikel 111178. https://doi.org/10.1016/j.ijfoodmicro.2025.111178

Lülf, R. H., Vogel, R. F. & Ehrmann, M. A. (2021). Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations. International Journal of Food Microbiology, 354, Artikel 109316. https://doi.org/10.1016/j.ijfoodmicro.2021.109316

Link, T., Lülf, R. H., Parr, M., Hilgarth, M. & Ehrmann, M. A. (2022). Genome Sequence of the Diploid Yeast Debaryomyces hansenii TMW 3.1188. Microbiology Resource Announcements, 11(11). https://doi.org/10.1128/mra.00649-22

Lülf, R. H., Hilgarth, M. & Ehrmann, M. A. (2022). Chromohalobacter moromii sp. nov., a moderately halophilic bacterium isolated from lupine-based moromi fermentation. Systematic and Applied Microbiology, 45(4), Artikel 126324. https://doi.org/10.1016/j.syapm.2022.126324

Lülf, R. H., Selg-Mann, K., Hoffmann, T., Zheng, T., Schirmer, M. & Ehrmann, M. A. (2023). Carbohydrate Sources Influence the Microbiota and Flavour Profile of a Lupine-Based Moromi Fermentation. Foods, 12(1), Artikel 197. https://doi.org/10.3390/foods12010197

Ma, Y., Vernet, G., Zhang, N. & Kara, S. (2025). Exploring DES-Water Mixtures for Improved ADH-CHMO Fusion Enzyme Performance in Linear Cascades. ChemCatChem, 17(5), Artikel e202401792. https://doi.org/10.1002/cctc.202401792

Gonzalez-Serrano, D. J., Benmebarek, I. E., Hadidi, M., Bechtner, J. D., Martinez, M. M., Cabañas, B. & Moreno, A. (2025). Optimization of microwave-assisted hydrothermal extraction of homogalacturonan-rich, low methoxyl pectin from discarded garlic peels: Comparative macromolecular and functional analysis with conventional extraction. Food Hydrocolloids, 166, Artikel 111324. https://doi.org/10.1016/j.foodhyd.2025.111324

Temovska, M., Hegner, R., Ortiz-Ardila, A. E., Usack, J. G. & Angenent, L. T. (2025). Lactate production from lactose-rich wastewater: A comparative study on reactor configurations to maximize conversion rates and efficiencies. Water Research, 278, Artikel 123365. https://doi.org/10.1016/j.watres.2025.123365

Lara, A. R. & Gosset, G. (2019). Preface. I Minimal Cells: Design, Construction, Biotechnological Applications (s. v-vi). Springer International Publishing.

Pablos, T. E., Sigala, J. C., Le Borgne, S. & Lara, A. R. (2014). Aerobic expression of Vitreoscilla hemoglobin efficiently reduces overflow metabolism in Escherichia coli. Biotechnology Journal, 9(6), 791-799. https://doi.org/10.1002/biot.201300388

de la Cruz, M., Ramírez, E. A., Sigala, J. C., Utrilla, J. & Lara, A. R. (2020). Plasmid DNA production in proteome-reduced Escherichia coli. Microorganisms, 8(9), 1-8. Artikel 1444. https://doi.org/10.3390/microorganisms8091444

Chávez-Béjar, M. I., Lara, A. R., López, H., Hernández-Chávez, G., Martinez, A., Ramírez, O. T., Bolívar, F. & Gosset, G. (2008). Metabolic engineering of Escherichia coli for L-tyrosine production by expression of genes coding for the chorismate mutase domain of the native chorismate mutase-prephenate dehydratase and a cyclohexadienyl dehydrogenase from Zymomonas mobilis. Applied and Environmental Microbiology, 74(10), 3284-3290. https://doi.org/10.1128/AEM.02456-07

Lara, A. R. & Gosset, G. (2019). Minimal cells: Design, construction, biotechnological applications. Springer International Publishing. https://doi.org/10.1007/978-3-030-31897-0

Borja, G. M., Meza Mora, E., Barrón, B., Gosset, G., Ramírez, O. T. & Lara, A. R. (2012). Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode. Microbial Cell Factories, 11, Artikel 132. https://doi.org/10.1186/1475-2859-11-132

Taymaz-Nikerel, H. & Lara, A. R. (2016). Editorial: Quantitative systems biology for engineering organisms and pathways. Frontiers in Bioengineering and Biotechnology, 4(MAR), Artikel 22. https://doi.org/10.3389/fbioe.2016.00022

Jaén, K. E., Velazquez, D., Sigala, J. C. & Lara, A. R. (2021). Enhancing microaerobic plasmid DNA production by chromosomal expression of Vitreoscilla hemoglobin in E. coli. Biochemical Engineering Journal, 166, Artikel 107862. https://doi.org/10.1016/j.bej.2020.107862

Lara, A. R., Caspeta, L., Gosset, G., Bolívar, F. & Ramírez, O. T. (2008). Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: An alternative to fed-batch cultures. Biotechnology and Bioengineering, 99(4), 893-901. https://doi.org/10.1002/bit.21664

Fuentes, L. G., Lara, A. R., Martínez, L. M., Ramírez, O. T., Martínez, A., Bolívar, F. & Gosset, G. (2013). Modification of glucose import capacity in Escherichia coli: Physiologic consequences and utility for improving DNA vaccine production. Microbial Cell Factories, 12(1), Artikel 42. https://doi.org/10.1186/1475-2859-12-42

Jaén, K. E., Lara, A. R. & Ramírez, O. T. (2013). Effect of heating rate on pDNA production by E. coli. Biochemical Engineering Journal, 79, 230-238. https://doi.org/10.1016/j.bej.2013.08.006

Jaén, K. E., Velazquez, D., Delvigne, F., Sigala, J. C. & Lara, A. R. (2019). Engineering E. coli for improved microaerobic pDNA production. Bioprocess and Biosystems Engineering, 42(9), 1457-1466. https://doi.org/10.1007/s00449-019-02142-5

Caspeta, L., Lara, A. R., Pérez, N. O., Flores, N., Bolívar, F. & Ramírez, O. T. (2013). Enhancing thermo-induced recombinant protein production in Escherichia coli by temperature oscillations and post-induction nutrient feeding strategies. Journal of Biotechnology, 167(1), 47-55. https://doi.org/10.1016/j.jbiotec.2013.06.001

Pablos, T. E., Soto, R., Mora, E. M., Le Borgne, S., Ramírez, O. T., Gosset, G. & Lara, A. R. (2012). Enhanced production of plasmid DNA by engineered Escherichia coli strains. Journal of Biotechnology, 158(4), 211-214. https://doi.org/10.1016/j.jbiotec.2011.04.015

Lara, A. R., Jaén, K. E., Sigala, J. C., Regestein, L. & Büchs, J. (2017). Evaluation of microbial globin promoters for oxygen-limited processes using Escherichia coli. Journal of Biological Engineering, 11(1), Artikel 39. https://doi.org/10.1186/s13036-017-0082-3

Lara, A. R., Knabben, I., Regestein, L., Sassi, J., Caspeta, L., Ramírez, O. T. & Büchs, J. (2011). Comparison of oxygen enriched air vs. pressure cultivations to increase oxygen transfer and to scale-up plasmid DNA production fermentations. Engineering in Life Sciences, 11(4), 382-386. https://doi.org/10.1002/elsc.201000104

Lara, A. R., Leal, L., Flores, N., Gosset, G., Bolívar, F. & Ramírez, O. T. (2006). Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system. Biotechnology and Bioengineering, 93(2), 372-385. https://doi.org/10.1002/bit.20704

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Revideret 13.11.2025

AU Engineering