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Department of Biological and Chemical Engineering

Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Dijk, J. A., Breugelmans, P., Philips, J., Haest, P. J., Smolders, E. & Springael, D. (2008). Catalyzed reporter deposition-fluorescent in situ hybridization (CARD-FISH) detection of Dehalococcoides. Journal of Microbiological Methods, 73(2), 142-147. https://doi.org/10.1016/j.mimet.2008.01.012

Haest, P. J., Philips, J., Springael, D. & Smolders, E. (2011). The reactive transport of trichloroethene is influenced by residence time and microbial numbers. Journal of Contaminant Hydrology, 119(1-4), 89-98. https://doi.org/10.1016/j.jconhyd.2010.09.011

Philips, J., Springael, D. & Smolders, E. (2011). A three-layer diffusion-cell to examine bioenhanced dissolution of chloroethene dense non-aqueous phase liquid. Chemosphere, 83(7), 991-996. https://doi.org/10.1016/j.chemosphere.2011.02.012

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Distribution of a dechlorinating community in relation to the distance from a trichloroethene dense non-aqueous phase liquid in a model aquifer. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Philips, J., Van Muylder, R., Springael, D. & Smolders, E. (2013). Electron donor limitations reduce microbial enhanced trichloroethene DNAPL dissolution: a flux-based analysis using three-layer diffusion-cells. Chemosphere, 91(1), 7-13. https://doi.org/10.1016/j.chemosphere.2012.11.016

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Inhibition of Geobacter Dechlorinators at Elevated Trichloroethene Concentrations Is Explained by a Reduced Activity Rather than by an Enhanced Cell Decay. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Paul, L., Herrmann, S., Koch, C. B., Philips, J. & Smolders, E. (2013). Inhibition of microbial trichloroethylene dechorination by Fe (III) reduction depends on Fe mineralogy: A batch study using the bioaugmentation culture KB-1. Water Research, 47(7), 2543-2554. https://doi.org/10.1016/j.watres.2013.02.029

Philips, J., Maes, N., Springael, D. & Smolders, E. (2013). Acidification due to microbial dechlorination near a TCE DNAPL is overcome with pH buffer or formate as electron donor: experimental demonstration in diffusion-cells. Journal of Contaminant Hydrology, 147, 25-33. https://doi.org/10.1016/j.jconhyd.2013.02.002

Philips, J., Miroshnikov, A., Haest, P. J., Springael, D. & Smolders, E. (2014). Motile Geobacter dechlorinators migrate into a model source zone of trichloroethene dense non-aqueous phase liquid: Experimental evaluation and modeling. Journal of Contaminant Hydrology, 170, 28-38. https://doi.org/10.1016/j.jconhyd.2014.09.010

Chen, S., Rotaru, A.-E., Liu, F., Philips, J., Woodard, T. L., Nevin, K. P. & Lovley, D. R. (2014). Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures. Bioresource Technology, 173, 82-86. https://doi.org/10.1016/j.biortech.2014.09.009

Philips, J., Verbeeck, K., Rabaey, K. & Arends, J. B. A. (2016). Electron transfer mechanisms in biofilms. In Microbial Electrochemical and Fuel Cells (pp. 67-113). Elsevier. https://doi.org/10.1016/C2014-0-01767-4

Zhang, X., Philips, J., Roume, H., Guo, K., Rabaey, K. & Prevoteau, A. (2017). Rapid and quantitative assessment of redox conduction across electroactive biofilms via double potential step chronoamperometry. ChemElectroChem, 4(5), 1026-1036. https://doi.org/10.1002/celc.201600853

Philips, J., Rabaey, K., R. Lovley, D. & Vargas, M. (2017). Biofilm formation by Clostridium ljungdahlii is induced by sodium chloride stress: Experimental evaluation and transcriptome analysis. PLOS ONE, 12(1), Article e0170406. https://doi.org/10.1371/journal.pone.0170406

Zeng, S., Liu, J., Anankanbil, S., Chen, M., Guo, Z., P. Adams, J., Snajdrova, R. & Li, Z. (2018). Amide Synthesis via Aminolysis of Ester or Acid with an Intracellular Lipase. A C S Catalysis, 8(9), 8856-8865. https://doi.org/10.1021/acscatal.8b02713

Pérez, B., Coletta, A., Pedersen, J. N., Petersen, S. V., Periole, X., Pedersen, J. S., Sessions, R. B., Guo, Z., Perriman, A. & Schiøtt, B. (2018). Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases. Scientific Reports, 8(1), Article 12293. https://doi.org/10.1038/s41598-018-29871-z

Engel, J., Opperman, D. J., Hollmann, F. & Kara, S. (2016). Characterisation of a Convergent Enzymatic Cascade for ε-Caprolactone Synthesis. Poster session presented at 8 th International Congress on Biocatalysis, Hamburg, Schleswig-Holstein, Germany.

Engel, J., Mthethwa, K. S., Opperman, D. J. & Kara, S. (2017). Newly Designed and Discovered Monooxygenases for Synthesis of ECL. Poster session presented at The 19th triennial International Symposium on Flavins and Flavoproteins , Groningen, Netherlands. http://businessdocbox.com/Biotech_and_Biomedical/67687944-July-2-6-2017-groningen-the-netherlands.html

Chowdhury, M. R., Lashkari, S., Jensen, S. K., Ambye-Jensen, M. & Weisbjerg, M. R. (2018). Effects of Heat Treatment of Green Protein on in Situ Protein Disappearance and in Vitro Fatty Acid Biohydrogenation. Journal of Agricultural and Food Chemistry, 66(30), 8169-8178. https://doi.org/10.1021/acs.jafc.8b02176

Villadsen, N. L., Hansen, B. K., Svenningsen, E. B., Jørgensen, K. H., Tørring, T. & Poulsen, T. B. (2018). Stendomycin and Pantomycin Are Identical Natural Products: Preparation of a Functionalized Bioactive Analogue. Journal of Organic Chemistry, 83(13), 7303-7308. https://doi.org/10.1021/acs.joc.8b00553

Maegaard, K., Kofoed, M. V. W., Agneessens, L., Ottosen, L. D. M., Nielsen, L. P. & Revsbech, N. P. (2018). A methanogenic biofilm for biogas upgrading - Investigated on a microscale. Poster session presented at Biofilms 8, Aarhus, Denmark.

Corona, A., Parajuli, R., Ambye-Jensen, M., Hauschild, M. Z. & Birkved, M. (2018). Environmental screening of potential biomass for green biorefinery conversion. Journal of Cleaner Production, 189, 344-357. https://doi.org/10.1016/j.jclepro.2018.03.316

Kara, S. & Liese, A. (2010). Enzymatic C–C bond formation, asymmetric. In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology. (pp. 2034-2049). John Wiley & Sons Inc.. https://doi.org/10.1002/9780470054581.eib272

Berheide, M., Peper, S., Kara, S., Sing Long, W., Schenkel, S., Pohl, M., Niemeyer, B. & Liese, A. (2009). Influence of the hydrostatic pressure and pH on the asymmetric 2‐hydroxyketone formation catalyzed by Pseudomonas putida benzoylformate decarboxylase and variants thereof. Biotechnology and Bioengineering, 106(1), 18-26. https://doi.org/10.1002/bit.22650

Kara, S., Anton, F., Solle, D., Neumann, M., Hitzmann, B., Scheper, T. & Liese, A. (2010). Fluorescence spectroscopy as a novel method for online analysis of biocatalytic C–C bond formations. Journal of Molecular Catalysis B: Enzymatic, 66, 124-129.

Kara, S., J. Mueller, J. & Liese, A. (2011). Online analysis methods for monitoring of bioprocesses. Chimica Oggi-Chemistry Today, 29(2), 38-41. https://www.researchgate.net/publication/234015522_Online_analysis_methods_for_monitoring_of_bioprocesses

Peper, S., Kara, S., Sing Long, W., Liese, A. & Niemeyer, B. (2011). Immobilization and characterization of benzoylformate decarboxylase from Pseudomonas putida on spherical silica. Bioprocess and Biosystems Engineering, 34(6), 671-680. https://doi.org/10.1007/s00449-011-0516-0

Kara, S., Sing Long, W., Berheide, M., Peper, S., Niemeyer, B. & Liese, A. (2011). Influence of reaction conditions on the enantioselectivity of biocatalyzed C–C bond formations under high pressure conditions. Journal of Biotechnology, 152(3), 87-92. https://doi.org/10.1016/j.jbiotec.2011.01.020

Könst, P., Merkens, H., Kara, S., Kochius, S., Vogel, A., Zuhse, R., Holtmann, D., Arends, I. W. C. E. & Hollmann, F. (2012). Enantioselective oxidation of aldehydes catalyzed by alcohol dehydrogenase. Angewandte Chemie, 51(48), 9914-9917. https://doi.org/10.1002/anie.201203219

Könst, P., Kara, S., Kochius, S., Holtmann, D., Arends, I. W. C. E., Ludwig, R. & Hollmann, F. (2013). Expanding the scope of laccase-mediator systems. ChemCatChem, 5(10), 3027-3032. https://doi.org/10.1002/cctc.201300205

Kara, S., Spickermann, D., Schrittwieser, J. H., Leggewie, C., van Berkel, W. J. H., Arends, I. W. C. E. & Hollmann, F. (2012). More efficient redox biocatalysis by utilising 1,4-butanediol as a ‘smart cosubstrate’. Green Chemistry and Sustainable Technology, 15, 330-335. https://doi.org/10.1039/C2GC36797A

Schrittwieser, J. H., Coccia, F., Kara, S., Grischek, B., Kroutil, W., dÁlessandro, N. & Hollmann, F. (2013). One-pot combination of enzyme and Pd nanoparticle catalysis for the synthesis of enantiomerically pure 1,2-amino alcohols. Green Chemistry, 15, 3318-3331. https://doi.org/10.1039/C3GC41666F

Kara, S., Schrittwieser, J. H. & Hollmann, F. (2013). Strategies for cofactor regeneration in biocatalyzed reductions. In E. Brenna (Ed.), Synthetic Methods for Biologically Active Molecules: Exploiting the Potential of Bioreductions (pp. 209-238). Wiley-VCH Verlag GmbH. https://doi.org/10.1002/9783527665785.ch08

Kara, S., Spickermann, D., Schrittwieser, J. H., Weckbecker, A., Leggewie, C., Arends, I. W. C. E. & Hollmann, F. (2013). Access to lactone building blocks via horse liver alcohol dehydrogenase-catalyzed oxidative lactonization. A C S Catalysis, 3(11), 2536-2439. https://doi.org/10.1021/cs400535c

Kara, S., Schrittwieser, J. H., Hollmann, F. & B. Ansorge-Schumacher, M. (2014). Recent trends and novel concepts in cofactor-dependent biotransformations. Applied Microbiology and Biotechnology, 98(4), 1517-1529. https://doi.org/10.1007/s00253-013-5441-5

Hollmann, F. & Kara, S. (2014). Biokatalyse in unkonventionellen Reaktionsmedien. BioSpektrum, 20(1), 100-102. https://doi.org/10.1007/s12268-014-0412-7

Spickermann, D., Kara, S., Barackov, I., Hollmann, F., Schwaneberg, U., Dünkelmann, P. & Leggewie, C. (2014). Enzyme stabilization by additives under industrial relevant reaction conditions. Journal of Molecular Catalysis B: Enzymatic, 103, 24-28.

Bisagni, S., Summers, B., Kara, S., Hatti-Kaul, R., Grogan, G., Mamo, G. & Hollmann, F. (2014). Exploring the substrate specificity and enantioselectivity of a Baeyer-Villiger monooxygenase from Dietzia sp. D5: oxidation of sulfides and aldehydes. Topics in Catalysis, 57(5), 366-375. https://doi.org/10.1007/s11244-013-0192-1

Kara, S., Spickermann, D., Weckbecker, A., Leggewie, C., Arends, I. W. C. E. & Hollmann, F. (2014). Bioreductions catalyzed by an alcohol dehydrogenase in non-aqueous media. ChemCatChem, 6, 973-976. https://doi.org/10.1002/cctc.201300841

Kochius, S., Ni, Y., Kara, S., Gargiulo, S., Schrader, J., Holtmann, D. & Hollmann, F. (2014). Light-accelerated biocatalytic oxidation reactions. ChemPlusChem, 79(11), 1554-1557. https://doi.org/10.1002/cplu.201402152

Petrenz, A., Dominguez De Maria, P., Ramanathan, A., Hanefeld, U., B. Ansorge-Schumacher, M. & Kara, S. (2014). Medium and reaction engineering for the establishment of a chemo-enzymatic dynamic kinetic resolution of rac-benzoin in batch and continuous mode. Journal of Molecular Catalysis B: Enzymatic, 114, 42-49. https://doi.org/10.1016/j.molcatb.2014.10.011

Berheide, M., Kara, S. & Liese, A. (2015). Reversibility of asymmetric catalyzed C–C Bond formation by benzoylformate decarboxylase. Catalysis Science & Technology, 5, 2418-2426. https://doi.org/10.1039/C4CY00171K

Zuhse, R., Leggewie, C., Hollmann, F. & Kara, S. (2015). Scaling-up of 'smart cosubstrate' 1,4-butanediol promoted asymmetric reduction of ethyl-4,4,4-trifluoroacetoacetate in organic media. Organic Process Research & Development, 19(2), 369-372. https://doi.org/10.1021/op500374x

Kara, S., Schrittwieser, J. H., Gargiulo, S., Ni, Y., Yanase, H., Opperman, D. J. & van Berkel, W. J. H. (2015). Complete enzymatic oxidation of methanol to carbon dioxide: Towards more eco-efficient regeneration systems for reduced nicotinamide cofactors. Advanced Synthesis & Catalysis, 357(8), 1687-1691. https://doi.org/10.1002/adsc.201500173

Bornadel, A., Hatti-Kaul, R., Hollmann, F. & Kara, S. (2015). A bi-enzymatic convergent cascade for ε‐Caprolacton synthesis employing 1,6-hexanediol as a ‘double-smart cosubstrate. ChemCatChem, 7, 2442-2445. https://doi.org/10.1002/cctc.201500511

Bornadel, A., Hatti-Kaul, R., Hollmann, F. & Kara, S. (2016). Enhancing the productivity of the bi-enzymatic convergent cascade for ɛ-caprolactone synthesis through design of experiments and a biphasic system. Tetrahedron, 72(46), 7222-7228. https://doi.org/10.1016/j.tet.2015.11.054

pesci, L., Kara, S. & Liese, A. (2016). Evaluation of the substrate scope of benzoic acid (de)carboxylases according to chemical and biochemical parameters. ChemBioChem, 17(19), 1845-1850. https://doi.org/10.1002/cbic.201600333

Scherkus, C., Schmidt, S., T. Bornscheuer, U., Gröger, H., Kara, S. & Liese, A. (2016). A fed-batch synthetic strategy for a multi-enzymatic synthesis of Poly‐ϵ‐caprolactone. ChemCatChem, 8(22), 3446-3452. https://doi.org/10.1002/cctc.201600806

Rauch, M., Schmidt, S., Arends, I. W. C. E., Oppelt, K., Kara, S. & Hollmann, F. (2017). Photocatalytic alcohol oxidation using LED light sources. Green Chemistry, 19(2), 376-379. https://doi.org/10.1039/C6GC02008A

pesci, L., Baydar, M., Glueck, S., Faber, K., Liese, A. & Kara, S. (2017). Development and scaling-up of the fragrance compound 4‑ethylguaiacol synthesis via a two-step chemo-enzymatic reaction sequence. Organic Process Research & Development, 21(1), 85-93. https://doi.org/10.1021/acs.oprd.6b00362

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