Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Yong-Jin, H., Huang, Z., Zhong, C., Guo, Z. & Chen, B. (2019). Pressurized liquid extraction with ethanol as a green and efficient technology to lipid extraction of Isochrysis biomass. Bioresource Technology, 293, Artikel 122049. https://doi.org/10.1016/j.biortech.2019.122049

Eser, B. E., Poborsky, M., Dai, R., Kishino, S., Ljubic, A., Takeuchi, M., Jacobsen, C., Ogawa, J., Kristensen, P. & Guo, Z. (2020). Rational Engineering of Hydratase from Lactobacillus Acidophilus Reveals Critical Residues Directing Substrate Specificity and Regioselectivity. ChemBioChem, 21(4), 550-563. https://doi.org/10.1002/cbic.201900389

Dominguez de Maria, P., Guajardo, N. & Kara, S. (2019). Enzyme catalysis: In DES, with DES, and in the presence of DES. I D. J. Ramón & G. Guillena (red.), Deep Eutectic Solvents: Synthesis, Properties, and Applications (s. 257-271). Wiley. https://doi.org/10.1002/9783527818488.ch13

Kamp, A., Ambye-Jensen, M. & Østergård, H. (2019). Modelling matter and energy flows of local, refined grass-clover protein feed as alternative to imported soy meal. Ecological Modelling, 410, 1-12. Artikel 108738. https://doi.org/10.1016/j.ecolmodel.2019.108738

Schmid, J. M., Skjold, T., Kolstad, H. A., Miehe, M., Spillner, E. & Hoffmann, H. J. (2019). Work-related allergic asthma: Clinical work-up of a 45-year old male working in animal feed producing industry. Allergy: European Journal of Allergy and Clinical Immunology, 74, 316-316.

Strecker, C., Bärenfänger, M., Miehe, M., Spillner, E. & Meyer, B. (2020). In Silico Evaluation of the Binding Site of Fucosyltransferase 8 and First Attempts to Synthesize an Inhibitor with Drug-Like Properties. ChemBioChem, 21(13), 1923-1931. https://doi.org/10.1002/cbic.201900289

Engel, J., Cordellier, A., Huang, L. & Kara, S. (2019). Enzymatic Ring‐Opening Polymerization of Lactones: Traditional Approaches and Alternative Strategies. ChemCatChem, 11(20), 4983-4997. https://doi.org/10.1002/cctc.201900976

Liu, S., Yu, B., Wang, Z., Hu, J., Fu, M., Wang, Y., Liu, J., Guo, Z., Xu, X. & Ding, Y. (2019). Highly selective isomerization of cottonseed oil into conjugated linoleic acid catalyzed by multiwalled carbon nanotube supported ruthenium. R S C Advances, 36(36), 20698-20705. https://doi.org/10.1039/C9RA02640A

Abd El-Maksoud , A. A., Anankanbil, S., Zhou, Y., H. Abd El-Ghany, I., S. El-Beltagi, H., Banerjee, C., Petersen, S. V. & Guo, Z. (2019). Grafting phenolics onto milk protein via conjugated polymerization for delivery of multiple functionalities: Synthesis and characterization. Food Chemistry, 301, Artikel 125298. https://doi.org/10.1016/j.foodchem.2019.125298

Larsen, S. U., Ambye-Jensen, M., Jørgensen, H. & Jørgensen, U. (2019). Ensiling of the pulp fraction after biorefining of grass into pulp and protein juice. Industrial Crops and Products, 139(November), Artikel 111576. https://doi.org/10.1016/j.indcrop.2019.111576

Jensen, M. B., Strübing, D., de Jonge, N., Nielsen, J. L., Ottosen, L. D. M., Koch, K. & Kofoed, M. V. W. (2019). Stick or leave - Pushing methanogens to biofilm formation for ex situ biomethanation. Bioresource Technology, 291, Artikel 121784. https://doi.org/10.1016/j.biortech.2019.121784

Buescher, N., Sayoga, G., Rübsam, K., Jakob, F., Schwaneberg, U., Kara, S. & Liese, A. (2019). Biocatalyst Immobilization by Anchor Peptides on an Additively Manufacturable Material. Organic Process Research & Development, 23(9), 1852-1859. https://doi.org/10.1021/acs.oprd.9b00152

Cheng, W., Anankanbil, S., Pérez, B., ILYASOGLU, H., Liu, G. & Guo, Z. (2019). Water-mediated catalyst-free synthesis of lysine-based ampholytic amphiphiles for multipurpose applications: Characterization and pH-responsive emulsifying properties. Journal of Colloid and Interface Science, 554, 404-416. https://doi.org/10.1016/j.jcis.2019.06.104

Kara, S. & Liese, A. (2019). Process considerations for the application of enzymes. I A. Vogel & O. May (red.), Industrial enzyme applications (s. 71-94). Wiley. https://books.google.dk/books?id=eJGfDwAAQBAJ&pg=PA76&lpg=PA76&dq=%22Process+Considerations+for+the+Application+of+Enzymes%22&source=bl&ots=B5xnLGv7h9&sig=ACfU3U2rZsZwykthd-I_bErmKgtQPcc3AQ&hl=da&sa=X&ved=2ahUKEwj0ss-I8qTjAhXC-KQKHRcbBf4Q6AEwAHoECAIQAQ#v=onepage&q=%22Process%20Considerations%20for%20the%20Application%20of%20Enzymes%22&f=false

Marietou, A., Lund, M. B., Marshall, I. P. G., Schreiber, L. & Jørgensen, B. B. (2020). Complete genome sequence of Desulfobacter hydrogenophilus AcRS1. Marine Genomics, 50, Artikel 100691. https://doi.org/10.1016/j.margen.2019.05.006

Li, J., Yong-Jin, H., Anankanbil, S. & Guo, Z. (2019). Phospholipid-Based Surfactants. I D. G. Hayes, D. K. Y. Solaiman & R. D. Ashby (red.), Biobased Surfactants: Synthesis, Properties, and Applications (2 udg., s. 243-286). Academic Press. https://doi.org/10.1016/B978-0-12-812705-6.00007-1

Maegaard, K., Garcia-Robledo, E., Kofoed, M. V. W., Agneessens, L. M., de Jonge, N., Nielsen, J. L., Ottosen, L. D. M., Nielsen, L. P. & Revsbech, N. P. (2019). Biogas upgrading with hydrogenotrophic methanogenic biofilms. Bioresource Technology, 287, Artikel 121422. https://doi.org/10.1016/j.biortech.2019.121422

Chen, X., Ottosen, L. D. M. & Kofoed, M. V. W. (2019). How Low Can You Go: Methane Production of Methanobacterium congolense at Low CO2 Concentrations. Frontiers in Bioengineering and Biotechnology, 7, Artikel 00034. https://doi.org/10.3389/fbioe.2019.00034

Kofoed, M. V. W., Østedgaard-Munck, D. N., Agneessens, L., Bentien, A. & Ottosen, L. D. M. (2019). Engineering perspectives in microbial electrosynthesis. Poster-session præsenteret på AU Biological and Chemical Engineering
Conference
, Aarhus, Danmark.

Pätzold, M., Siebenhaller, S., Kara, S., Liese, A., Syldatk, C. & Holtmann, D. (2019). Deep Eutectic Solvents as Efficient Solvents in Biocatalysis. Trends in Biotechnology, 37(9), 943-959. https://doi.org/10.1016/j.tibtech.2019.03.007

Pedersen, J. N., Zhou, Y., Guo, Z. & Pérez, B. (2019). Genetic and chemical approaches for surface charge engineering of enzymes and their applicability in biocatalysis: A review. Biotechnology and Bioengineering, 116(7), 1795-1812. https://doi.org/10.1002/bit.26979

İlyasoğlu, H. & Guo, Z. (2019). Water soluble chitosan-caffeic acid conjugates as a dual functional polymeric surfactant. Food Bioscience, 29(June), 118-125. https://doi.org/10.1016/j.fbio.2019.04.007

İlyasoğlu, H., Nadzieja, M. & Guo, Z. (2019). Caffeic acid grafted chitosan as a novel dual-functional stabilizer for food-grade emulsions and additive antioxidant property. Food Hydrocolloids, 95(October), 168-176. https://doi.org/10.1016/j.foodhyd.2019.04.043

Vos, B. J. P. R., Dubois, A. E. J., Rauber, M. M., Pfützner, W., Miehe, M., Bohle, B., Möbs, C. & Oude Elberink, J. N. G. (2019). Initiating yellow jacket venom immunotherapy with a 100-μg dose: A challenge? The Journal of Allergy and Clinical Immunology: In Practice, 7(4), 1332-1334.e4. https://doi.org/10.1016/j.jaip.2018.09.005

Yesiltas, B., Sørensen, A.-D., Garcia-Moreno, P. J., Anankanbil, S., Guo, Z. & Jacobsen, C. (2019). Modified phosphatidylcholine with different alkyl chain length and covalently attached caffeic acid affects the physical and oxidative stability of omega-3 delivery 70% oil-in-water emulsions. Food Chemistry, 289(August), 490-499. https://doi.org/10.1016/j.foodchem.2019.03.087

Huang, L., Tang, W., Röllig, R., S. Albers, F., W. Fraaije, M. & Kara, S. (2019). Convergent cascade catalyzed by monooxygenase – alcohol dehydrogenase fusion applied in organic media. ChemBioChem, 20(13), 1653-1658. https://doi.org/10.1002/cbic.201800814

Guo, Z. (2019). “Directed evolution” steers new lipid chemistry: my experience working with a Nobel Prize Laureate in chemistry. INFORM, 30(3), 20-24.

Engel, J., Siphamandla Mthetwa, K., Opperman, D. J. & Kara, S. (2019). Characterization of new Baeyer-Villiger monooxygenases for lactonizations in redox-neutral cascades. Molecular Catalysis , 468(May), 44-51. https://doi.org/10.1016/j.mcat.2019.02.006

Cheng, W., Anankanbil, S., Pérez, B., Pedersen, J. N., Liu, G. & Guo, Z. (2019). Aspartic-acid-based ampholytic amphiphiles: Synthesis, characterization, and pH-dependent properties at air/water and oil/water interfaces. Journal of Agricultural and Food Chemistry, 67(8), 2321-2330. https://doi.org/10.1021/acs.jafc.8b05122

Pavon, J. A., Eser, B., Huynh, M. T. & Fitzpatrick, P. F. (2010). Single turnover kinetics of tryptophan hydroxylase: Evidence for a new intermediate in the reaction of the aromatic amino acid hydroxylases. Biochemistry, 49(35), 7563-7571.

Eser, B. E., Yazgan, Ü. C., Gürses, S. A. & Aydın, M. (2016). Diabetes Mellitus ve Epigenetik Mekanizmalar. Dicle Medical Journal/Dicle Tip Dergisi, 43(2).

Ak, S., Gürses, S. A. & Eser, B. E. (2016). Staphylococcus aureus'un makrofajlar tarafından fagositozu üzerine sigara dumanı ekstraktının etkisi. Mikrobiyoloji bulteni, 50(2), 205-14.

Demirörs, A. F., Eser, B. E. & Dag, O. (2005). Liquid crystalline mesophases of pluronics (L64, P65, and P123) and transition metal nitrate salts ([M(H2O)6](NO3)2). Langmuir, 21(9), 4156-62. https://doi.org/10.1021/la047136l

Eser, B. E., Barr, E. W., Frantom, P. A., Saleh, L., Bollinger, J. M., Krebs, C. & Fitzpatrick, P. F. (2007). Direct spectroscopic evidence for a high-spin Fe(IV) intermediate in tyrosine hydroxylase. Journal of the American Chemical Society, 129(37), 11334-5. https://doi.org/10.1021/ja074446s

Chow, M. S., Eser, B. E., Wilson, S. A., Hodgson, K. O., Hedman, B., Fitzpatrick, P. F. & Solomon, E. I. (2009). Spectroscopy and kinetics of wild-type and mutant tyrosine hydroxylase: mechanistic insight into O2 activation. Journal of the American Chemical Society, 131(22), 7685-98. https://doi.org/10.1021/ja810080c

Eser, B. E. & Fitzpatrick, P. F. (2010). Measurement of intrinsic rate constants in the tyrosine hydroxylase reaction. Biochemistry, 49(3), 645-52. https://doi.org/10.1021/bi901874e

Eser, B. E., Das, D., Han, J., Jones, P. R. & Marsh, E. N. G. (2011). Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: investigation of kinetics and requirement for an external electron donor. Biochemistry, 50(49), 10743-50. https://doi.org/10.1021/bi2012417

Krzyaniak, M. D., Eser, B. E., Ellis, H. R., Fitzpatrick, P. F. & McCracken, J. (2013). Pulsed EPR study of amino acid and tetrahydropterin binding in a tyrosine hydroxylase nitric oxide complex: evidence for substrate rearrangements in the formation of the oxygen-reactive complex. Biochemistry, 52(47), 8430-41. https://doi.org/10.1021/bi4010914

McCracken, J., Eser, B. E., Mannikko, D., Krzyaniak, M. D. & Fitzpatrick, P. F. (2015). HYSCORE Analysis of the Effects of Substrates on Coordination of Water to the Active Site Iron in Tyrosine Hydroxylase. Biochemistry, 54(24), 3759-71. https://doi.org/10.1021/acs.biochem.5b00363

Zhang, X., Eser, B. E., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). Structural Basis for Iron-Mediated Sulfur Transfer in Archael and Yeast Thiazole Synthases. Biochemistry, 55(12), 1826-38. https://doi.org/10.1021/acs.biochem.6b00030

Eser, B. E., Zhang, X., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). From Suicide Enzyme to Catalyst: The Iron-Dependent Sulfide Transfer in Methanococcus jannaschii Thiamin Thiazole Biosynthesis. Journal of the American Chemical Society, 138(11), 3639-42. https://doi.org/10.1021/jacs.6b00445

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2011). Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: a new reaction of diiron enzymes. Angewandte Chemie International Edition, 50(31), 7148-52. https://doi.org/10.1002/anie.201101552

Ambye-Jensen, M., Balzarotti, R., Thomsen, S. T., Fonseca, C. & Kádár, Z. (2018). Combined ensiling and hydrothermal processing as efficient pretreatment of sugarcane bagasse for 2G bioethanol production. Biotechnology for Biofuels, 11(1), Artikel 336. https://doi.org/10.1186/s13068-018-1338-y

Zhang, H., Lopez, P. C., Holland, C., Lunde, A., Ambye-Jensen, M., Felby, C. & Thomsen, S. T. (2018). The multi-feedstock biorefinery – Assessing the compatibility of alternative feedstocks in a 2G wheat straw biorefinery process. GCB Bioenergy, 10(12), 946-959. https://doi.org/10.1111/gcbb.12557

He, Y., Wang, X., Guo, Z., Jiang, Y. & Chen, F. (2019). Enzymatic ethanolysis subjected to Schizochytrium biomass: Sequential processing for DHA enrichment and biodiesel production. Energy Conversion and Management, 184, 159-171. https://doi.org/10.1016/j.enconman.2019.01.051

Zhou, Y., Pérez, B., Hao, W., Lv, J., Gao, R. & Guo, Z. (2019). The additive mutational effects from surface charge engineering: A compromise between enzyme activity, thermostability and ionic liquid tolerance. Biochemical Engineering Journal, 148, 195-204. https://doi.org/10.1016/j.bej.2018.07.020

Vanoppen, M., van Vooren, T., Gutierrez, L., Roman, M., Coué, LJ.-P., Verbeken, K., Philips, J. & Verliefde, A. R. D. (2019). Secondary treated domestic wastewater in reverse electrodialysis: what is the best pre-treatment? Separation and Purification Technology, 218, 25-42. https://doi.org/10.1016/j.seppur.2018.12.057

Scoma, A., Heyer, R., Rifai, R., Dandyk, C., Marshall, I., Kerckhof, F. M., Marietou, A., Boshker, H. T. S., Meysman, F. J. R., Malmos, K. G., Vosegaard, T., Vermeir, P., Banat, I. M., Benndorf, D. & Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME Journal, 13(4), 1004-1018. https://doi.org/10.1038/s41396-018-0324-5

pesci, L., Kara, S. & Liese, A. (2018). Enzymkinetik. I K.-E. Jaeger, A. Liese & C. Syldatk (red.), Einführung in die Enzymtechnologie (s. 53-75). Springer. https://doi.org/10.1007/978-3-662-57619-9_4

Kara, S. & von Langermann, J. (2018). Prinzipien der angewandten Biokatalyse. I K.-E. Jaeger, A. Liese & C. Syldatk (red.), Einführung in die Enzymtechnologie (s. 225-242). Springer. https://doi.org/10.1007/978-3-662-57619-9_13

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Revideret 16.01.2025

AU Engineering