Institut for Bio- og Kemiteknologi

Aarhus Universitets segl

Publications by Bioprocess Engineering

Are you looking for publications by Section of Bioprocess Engineering? On this page you can find all the publications made by the Section of Bioprocess Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Zhang, Y., Pedersen, J. N., Eser, B. E. & Guo, Z. (2022). Biodegradation of polyethylene and polystyrene: From microbial deterioration to enzyme discovery. Biotechnology Advances, 60, Artikel 107991. https://doi.org/10.1016/j.biotechadv.2022.107991
Dai, R. & Guo, Z. (2022). Pd/Ni-Al hydrotalcite for base-free alcohol oxidation: Dependency of activity and selectivity on palladium precursors and reduction reagents. Molecular Catalysis, 526, Artikel 112403. https://doi.org/10.1016/j.mcat.2022.112403
Stødkilde-Jørgensen, L., Lærke, H. N., Ambye-Jensen, M. & Jensen, S. K. (2022). Protein concentrates from lucerne; effect of processing on ileal digestibility. Animal - Science proceedings, 13(2), 145. Artikel O1. https://doi.org/10.1016/j.anscip.2022.04.002
Barbato, M., Palma, E., Marzocchi, U., Cruz Viggi, C., Rossetti, S., Aulenta, F. & Scoma, A. (2022). Snorkels enhance alkanes respiration at ambient and increased hydrostatic pressure (10 MPa) by either supporting the TCA cycle or limiting alternative routes for acetyl-CoA metabolism. Journal of Environmental Management, 316, Artikel 115244. https://doi.org/10.1016/j.jenvman.2022.115244
T. Grosmann, M., Andrade, T. A., di Bitonto, L., Pastore, C., Corazza, M. L., Tronci, S. & Errico, M. (2022). Hydrated metal salt pretreatment and alkali catalyzed reactive distillation: A two-step production of waste cooking oil biodiesel. Chemical Engineering and Processing - Process Intensification, 176, Artikel 108980. https://doi.org/10.1016/j.cep.2022.108980
Meyer, L.-E., Andersen, M. B. & Kara, S. (2022). A Deep Eutectic Solvent Thermomorphic Multiphasic System for Biocatalytic Applications. Angewandte Chemie International Edition, 61(31), Artikel e202203823. https://doi.org/10.1002/anie.202203823
Yazdi, F. G., Dalgaard, L. B., Li, Q., Ruscheweyh, H.-J., Thøgersen, R., Bertram, H. C. S., Hansen, M. & Schwab, C. (2022). Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women. Journal of Functional Foods, 93, Artikel 105089. https://doi.org/10.1016/j.jff.2022.105089
Dalby, F. R., Guldberg, L. B., Feilberg, A. & Kofoed, M. V. W. (2022). Reducing greenhouse gas emissions from pig slurry by acidification with organic and inorganic acids. PLoS One, 17(5), Artikel e0267693. https://doi.org/10.1371/journal.pone.0267693
Ambye-Jensen, M., (2022). Støtte til kvalificering af bioraffineringsprojekter – Del 1, Nr. 2022-0356347, 4 s., maj 12, 2022.
Irla, M. & Wendisch, V. F. (2022). Efficient cell factories for the production of N-methylated amino acids and for methanol-based amino acid production. Microbial Biotechnology, 15(8), 2145-2159. https://doi.org/10.1111/1751-7915.14067
Lyu, J., Zhang, J., Zhu, J., Chen, S., Han, T., Zhang, Y., Gao, R., Xie, G. & Guo, Z. (2022). Molecular dynamics simulation guided distal mutation of Thermotoga naphthophila β-glucosidase for significantly enhanced synthesis of galactooligosaccharides and expanded product scope. International Journal of Biological Macromolecules, 210, 21-32. https://doi.org/10.1016/j.ijbiomac.2022.05.002
Huang, Z., Guo, S., Guo, Z., He, Y. & Chen, B. (2022). Integrated green one-step strategy for concurrent recovery of phycobiliproteins and polyunsaturated fatty acids from wet Porphyridium biomass. Food Chemistry, 389, Artikel 133103. https://doi.org/10.1016/j.foodchem.2022.133103
Milic, M., Byström, E., Domínguez de María, P. & Kara, S. (2022). Enzymatic Cascade for the Synthesis of 2,5-Furandicarboxylic Acid in Biphasic and Microaqueous Conditions: ‘Media-Agnostic’ Biocatalysts for Biorefineries. ChemSusChem, 15(9), Artikel e202102704. https://doi.org/10.1002/cssc.202102704
Mapelli, F., Barbato, M., Chouaia, B., Riva, V., Daffonchio, D. & Borin, S. (2022). Bacterial community structure and diversity along the halocline of Tyro deep-sea hypersaline anoxic basin. Annals of Microbiology, 72(1), Artikel 7. https://doi.org/10.1186/s13213-022-01667-7
Liu, G., Bogojevic, O., Pedersen, J. N. & Guo, Z. (2022). Edible oleogels as solid fat alternatives: Composition and oleogelation mechanism implications. Comprehensive Reviews in Food Science and Food Safety, 21(3), 2077-2104. https://doi.org/10.1111/1541-4337.12928
Xie, D., Ji, X., Dai, Y., He, Y., Sun, H., Guo, Z., Yang, Y., Zheng, X. & Chen, B. (2022). Chlorella vulgaris cultivation in pilot-scale to treat real swine wastewater and mitigate carbon dioxide for sustainable biodiesel production by direct enzymatic transesterification. Bioresource Technology, 349, Artikel 126886. https://doi.org/10.1016/j.biortech.2022.126886
Aagaard, J. B., Sivelle, C., Fischer, M., Byskov, K., Laursen, N. S., Pfützner, W., Jakob, T., Möbs, C., Miehe, M. & Spillner, E. (2022). Nanobody-based human antibody formats act as IgE surrogate in hymenoptera venom allergy. Allergy: European Journal of Allergy and Clinical Immunology, 77(9), 2859-2862. https://doi.org/10.1111/all.15391
Andrade, T. A. & Ambye-Jensen, M. (2022). Process Integration and Techno-Economic Assessment of a Green Biorefinery Demonstration Scale Platform for Leaf Protein Production. I L. Montastruc & S. Negny (red.), Computer Aided Chemical Engineering: 32nd European Symposium on Computer Aided Process Engineering (Bind 51, s. 877-882). Artikel 147 Elsevier. https://doi.org/10.1016/B978-0-323-95879-0.50147-8, https://doi.org/10.1016/B978-0-323-95879-0.50147-8
Nærdal, I., Netzer, R., Irla, M., Krog, A., Heggeset, T. M. B., Wendisch, V. F. & Brautaset, T. (2017). L-lysine production by Bacillus methanolicus: Genome-based mutational analysis and L-lysine secretion engineering. Journal of Biotechnology, 244, 25-33. https://doi.org/10.1016/j.jbiotec.2017.02.001
Klein, V. J., Irla, M., López, M. G., Brautaset, T. & Brito, L. F. (2022). Unravelling Formaldehyde Metabolism in Bacteria: Road towards Synthetic Methylotrophy. Microorganisms, 10(2), Artikel 220. https://doi.org/10.3390/microorganisms10020220
Ng, K.-S., Chang, Y.-C., Chen, Y.-P., Lo, Y.-H., Wang, S.-Y. & Chen, M.-J. (2022). Characterization of exopolysaccharide-producing lactic acid bacteria from Taiwanese ropy fermented milk and their application in low-fat fermented milk. Animal Bioscience, 35(2), 281-289. https://doi.org/10.5713/ab.21.0251
Wang, S.-Y., Huang, R.-F., Ng, K.-S., Chen, Y.-P., Shiu, J.-S. & Chen, M.-J. (2021). Co-Culture Strategy of Lactobacillus kefiranofaciens HL1 for Developing Functional Fermented Milk. Foods, 10(9), 2098. Artikel 2098. https://doi.org/10.3390/foods10092098
Khider, M. L. K., Brautaset, T. & Irla, M. (2021). Methane monooxygenases: central enzymes in methanotrophy with promising biotechnological applications. World Journal of Microbiology and Biotechnology, 37(4), Artikel 72. https://doi.org/10.1007/s11274-021-03038-x
Irla, M., Hakvåg, S. & Brautaset, T. (2021). Developing a riboswitch-mediated regulatory system for metabolic flux control in thermophilic bacillus methanolicus. International Journal of Molecular Sciences , 22(9), Artikel 4686. https://doi.org/10.3390/ijms22094686
Brito, L. F., Irla, M., Nærdal, I., Le, S. B., Delépine, B., Heux, S. & Brautaset, T. (2021). Evaluation of Heterologous Biosynthetic Pathways for Methanol-Based 5-Aminovalerate Production by Thermophilic Bacillus methanolicus. Frontiers in Bioengineering and Biotechnology, 9, Artikel 686319. https://doi.org/10.3389/fbioe.2021.686319
Gruenberg, M., Irla, M., Myllek, S. & Draths, K. (2021). Characterization of two 3-deoxy-D-Arabino-Heptulosonate 7-phosphate synthases from Bacillus methanolicus. Protein Expression and Purification, 188, Artikel 105972. https://doi.org/10.1016/j.pep.2021.105972
Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Artikel e202101625. https://doi.org/10.1002/cctc.202101625
Bonefeld, B. E., Lawther, M., Kristensen, C., Bentsen, N. S., Jørgensen, U. & Ambye-Jensen, M. (2019). MAN-MADE TEXTILE FIBRE OF NON-WOOD SIDESTREAM BIOMASS: - GRØNNE HOSER INBIOM PROJECT -. Poster-session præsenteret på Circular Bioeconomy Days 2019, Foulum, Danmark. https://conferences.au.dk/fileadmin/conferences/2019/bioeconomy/Posters/Birgit_Bonefeld_Man-made_textile_fibre_of_nonwood_biomass_sidestream_-_Final.pdf
Garcia Soriano, D. A., Andersen, F. D., Nygaard, J. V. & Tørring, T. (2021). ColFeatures: Automated data extraction and classification of bacterial colonies. bioRxiv. https://doi.org/10.1101/2021.05.27.445853
Meyer, J., Meyer, L.-E. & Kara, S. (2022). Enzyme immobilization in hydrogels: A perfect liaison for efficient and sustainable biocatalysis. Engineering in Life Sciences, 22(3-4), 165-177. https://doi.org/10.1002/elsc.202100087
Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), Artikel e202100606. https://doi.org/10.1002/cbic.202100606
Rodriguez-Dominguez, M. A., Bonefeld, B. E., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2022). The use of treatment wetlands plants for protein and cellulose valorization in biorefinery platform. Science of the Total Environment, 810, Artikel 152376. https://doi.org/10.1016/j.scitotenv.2021.152376
Chanquia, S. N., Valotta, A., Gruber-Woelfler, H. & Kara, S. (2021). Photobiocatalysis in continuous flow. Frontiers in Catalysis, 1. https://doi.org/10.3389/fctls.2021.816538/abstract
Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, Artikel 780092. https://doi.org/10.3389/fmicb.2021.780092
Møller, A. H., Hammershøj, M., Hachow Motta dos Passos, N., Tanambell, H., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Danielsen, M., Jensen, S. K. & Dalsgaard, T. K. (red.) (2021). Biorefinery of Green Biomass─How to Extract and Evaluate High Quality Leaf Protein for Food? Journal of Agricultural and Food Chemistry, 69(48), 14341-14357. https://doi.org/10.1021/acs.jafc.1c04289
Bittner, J. P., Zhang, N., Huang, L., Domínguez de María, P., Jakobtorweihen, S. & Kara, S. (2022). Impact of deep eutectic solvents (DESs) and individual DES components on alcohol dehydrogenase catalysis: Connecting experimental data and molecular dynamics simulations. Green Chemistry, 24(3), 1120-1131. https://doi.org/10.1039/D1GC04059F
Jurkas, V., Winkler, C. K., Poschenrieder, S., Oliveira, P., C. Pacheco, C., A. Ferreira, E., Weissensteiner, F., De Santis, P., Kara, S., Kourist, R., Tamagnini, P. & Kroutil, W. (2022). Expression and activity of heterologous hydroxyisocaproate dehydrogenases in Synechocystis sp. PCC 6803 ΔhoxYH. Engineering Microbiology, 2(1), Artikel 100008. https://doi.org/10.1016/j.engmic.2021.100008
Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H2 conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, Artikel 100876. https://doi.org/10.1016/j.biteb.2021.100876
Lustermans, J. J. M., Bjerg, J. J., Schramm, A. & Marshall, I. P. G. (2021). Phyllobacterium calauticae sp. nov. isolated from a microaerophilic veil transversed by cable bacteria in freshwater sediment. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 114(11), 1877-1887. https://doi.org/10.1007/s10482-021-01647-y
Chanquia, S. N., Vernet Armengol, G. & Kara, S. (2022). Photobioreactors for cultivation and synthesis: Specifications, challenges, and perspectives. Engineering in Life Sciences, 22(12), 712-724. https://doi.org/10.1002/elsc.202100070
Rodriguez-Dominguez, M. A., Bonefeld, B. E., Biller, P., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2021). Production of high-value bio-resources from treatment wetland biomass. Abstract fra WETPOL 2021: 9th International Symposium on Wetland Pollutants Dynamics and Control, Vienna, Østrig.
Sonnenberg-Riethmacher, E., Miehe, M. & Riethmacher, D. (2021). Periostin in Allergy and Inflammation. Frontiers in Immunology, 12, Artikel 722170. https://doi.org/10.3389/fimmu.2021.722170
Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), Artikel 106390. https://doi.org/10.1016/j.jece.2021.106390
Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840
Lærke, H. N., Stødkilde, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. EAAP Scientific Series, 138, 177-178. https://doi.org/10.3920/978-90-8686-891-9_28
Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), Artikel 9295. https://doi.org/10.3390/su13169295
Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in Applied Microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004
Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. https://doi.org/10.1038/s41396-021-01061-2
Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, Artikel 117528. https://doi.org/10.1016/j.watres.2021.117528
Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Artikel 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

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AU Engineering