Institut for Bio- og Kemiteknologi

Aarhus Universitets segl

Publications by Bioprocess Engineering

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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García Martínez, J. B., Behr, J., Andrade, T. A., Blouin, S., Costa, J. & Denkenberger, D. (2026). Global potential of integrated biorefineries for leaf protein and sugar: Producing sustainable food and preventing starvation in catastrophes. Sustainable Production and Consumption, 64, 247-265. https://doi.org/10.1016/j.spc.2026.02.009
Tvilum, M. S., Nielsen, C. B., Steensgaard, I., Poulsen, T. B., Johannsen, M. & Tørring, T. (2026). Hypoxia-induced production of the cyclolipodepsipeptide BE-43547 by Micromonospora sp. RV43. Microbiology, 172(2), Artikel 001662. https://doi.org/10.1099/mic.0.001662
Aagaard, J. B., Gandini, R., Ballegaard, A.-S. R., Krogstrup Jensen, B., Dorn, B., Verner, A., Lenstrup, A., Sønderholm, M., Miehe, M., Pfützner, W., Jakob, T., Andersen, G. R., Möbs, C. & Spillner, E. (2026). Nanobody-based IgG simultaneously inhibit the allergenic and enzymatic activity of the dominant honeybee venom allergen. Nature Communications, 17(1), Artikel 1814. https://doi.org/10.1038/s41467-026-69572-0
Palacios, P. A. & Kofoed, M. V. W. (2026). Demonstration of H2/CO2 acetogenesis by Acetobacterium wieringae in a trickle-bed reactor without organic substrates. Chemical Engineering Journal Advances, 25, Artikel 101029. https://doi.org/10.1016/j.ceja.2025.101029
Huertas-Díaz, L., Hosek, J., Gram-Hansen, D., Frei, R., Roduit, C., Sasaki, M., Lauener, R. P., Schwab, C. & C. K.-CARE Study Group (2026). pH-Dependent Effects of Short-chain Carboxylic Acids and Buffer Systems On Clostridioides difficile in Vitro and in Vivo. Microbial Ecology, 89(1), 45. Artikel 45. https://doi.org/10.1007/s00248-026-02694-6
Ambye-Jensen, M. & Moirangthem, K. (2025). Pretreatment of Biomass: Structural Modification, Preparation, and Fractionation of Biomass for Further Conversion. I Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era (s. 265-294). Cambridge University Press. https://doi.org/10.1017/9781108950831.008
Khider, M. L. K., Irla, M., López, M. G., Gispert, A., Konjetzko, T., Meliawati, M., Schmid, J., Brautaset, T. & Brito, L. F. (2026). CRISPR-Cas9-driven genome editing in Bacillus methanolicus MGA3. Frontiers in Microbiology, 16, Artikel 1728984. https://doi.org/10.3389/fmicb.2025.1728984
Dai, R., Zhou, B., Zeng, J., Qian, P., Sun, Y., Zhou, Y. & Guo, Z. (2026). Boosting catalytic dye degradation in Fe2O3 nanozyme through Cu-doping mediated phase transformation. Journal of Environmental Chemical Engineering, 14(1), Artikel 120625. https://doi.org/10.1016/j.jece.2025.120625
Lara, A. R., López-Pérez, M. & Fernández, F. J. (2025). Reprogramming microbial cells to improve the production of biopharmaceuticals and fine chemicals. I Whole Cell Biocatalysis: Fundamentals and Applications (s. 21-64). Elsevier. https://doi.org/10.1016/B978-0-443-23998-4.00002-6
Romio, C., Kofoed, M. V. W. & Møller, H. B. (2026). Alkaline treatment with KOH for enhanced biogas recovery from agricultural feedstock and digested residues. Biomass and Bioenergy, 209, Artikel 108913. https://doi.org/10.1016/j.biombioe.2025.108913
Meyer, J., Meyer, L. E., Borg, H., Dorfs, D. & Kara, S. (2025). Functionalized poly(aspartic acid) hydrogel particles as carriers for covalent enzyme immobilization. RSC Sustainability, 3(8), 3554-3566. https://doi.org/10.1039/d5su00280j
Qiu, J., Bibi, A., Lara, A. R., Wang, Q. & Dai, Z. (2026). Biosensors for coenzyme A thioester derivatives: Development, optimization and applications. Biotechnology Advances, 87, Artikel 108767. https://doi.org/10.1016/j.biotechadv.2025.108767
Engelbrecht, N., Ambrose, H. W., Sieborg, M. U. & Kofoed, M. V. W. (2026). Heat integration aspects of exothermic biomethanation: A pilot reactor with shell-and-tube heat exchange capability. Energy Conversion and Management, 353, Artikel 121168. https://doi.org/10.1016/j.enconman.2026.121168
Wang, F., Vig Benfeldt, F., Khazaee, Z., Nygaard Nielsen, M. L., Marks, M. J., Ouyang, Y., Lock, N., Gao, R., Guo, Z. & Eser, B. E. (2026). Metal–Organic Framework Encapsulation of Ferulic Acid Decarboxylase: Robust Biocomposites Catalyzing Synthetically Useful Decarboxylation and Synergized CO2Fixation Reactions. ACS Sustainable Chemistry and Engineering, 14(4), 1884-1898. https://doi.org/10.1021/acssuschemeng.5c09355
Nissen, S. H., Juul, L., Juel, N., Larsson, K., Nebel, C., Bruhn, A., Ambye-Jensen, M., Undeland, I. & Dalsgaard, T. K. (2026). Oxidative stability of protein concentrates from the green seaweed Ulva spp. Algal Research, 94, Artikel 104570. https://doi.org/10.1016/j.algal.2026.104570
Rosati, B., Skønager, J. T., Bektassov, M., Teng, Z., Glasius, M., Barbato, M., Bilde, M., Kristensen, K. V. & Tesson, S. V. M. (2026). Aerosolisation of microalgae: unveiling dimethyl-sulfide emissions during bubbling. npj Climate and Atmospheric Science, 9(1), Artikel 32. https://doi.org/10.1038/s41612-025-01305-4
Irla, M., Brito, L. F., Langlo, J., Wohlers, C., Benninghaus, L., Heid, C., Wendisch, V. F., Schmid, J. & Brautaset, T. (2026). Development of a markerless tool for targeted chromosome modification in the thermophilic and methylotrophic bacterium Bacillus methanolicus. Microbial Cell Factories, 25(1), Artikel 10. https://doi.org/10.1186/s12934-025-02880-0
Kromm, F. E. H., Møller, S. L. B., Jensen, A. S., Wørmer, G. J., Rasmussen, M. H., B. Svenningsen, E., Tørring, T. & Poulsen, T. B. (2026). Modular Total Synthesis of Lasalocid Acid A through Direct C(sp3)–C(sp3) Attached Ring Construction. Journal of the American Chemical Society, 148(1), 249-257. https://doi.org/10.1021/jacs.5c11543
Fang, F., Franco, M., Gallego-Lobillo, P., Spotti, M. J., Bechtner, J. D. & Martinez, M. M. (2026). Interactive effects of free and cell wall-bound polyphenols on starch pasting, retrogradation, gelation and digestibility. Food Hydrocolloids, 175, Artikel 112457. https://doi.org/10.1016/j.foodhyd.2026.112457
Ma, Y. & Eser, B. E. (2025). Bridging Disciplines in Enzyme Kinetics: Understanding Steady-State, Transient-State and Performance Parameters. Catalysts, 15(12), Artikel 1139. https://doi.org/10.3390/catal15121139
Lucas, T. N., Biehain, U., Gautam, A., Gemeinhardt, K., Lass, T., Konzalla, S., Ley, R. E., Angenent, L. T. & Huson, D. H. (2026). MMonitor for real-time monitoring of microbial communities using long reads. Cell Reports Methods, 6(1), Artikel 101266. https://doi.org/10.1016/j.crmeth.2025.101266
Vaupel, S., Meyer, L. E., Domínguez de María, P. & Kara, S. (2025). Molar-Scale Phenolic Acid Decarboxylation Using Thermostable Biocatalysts and Enzyme-Compatible Deep Eutectic Solvents. ChemSusChem, 18(24), Artikel e202501755. https://doi.org/10.1002/cssc.202501755
Ko, G., Park, H., Lee, C. Y., Angenent, L. T., Jeon, B. S. & Hwang, E. T. (2026). Biomineralization-driven one-pot separation and stabilization of extracellular lipases bypassing purification. International Journal of Biological Macromolecules, 337(Part 2), Artikel 149554. https://doi.org/10.1016/j.ijbiomac.2025.149554
Behan, J. A., Barrière, F., Geneste, F., Bodin, C., Vautier, A., Guihéneuf, S., Colavita, P. E., Philips, J., Reiner, J. E., Tschulkow, M. & Nimmegeers, P. (2025). Challenges and opportunities for the production of sustainable active species for redox flow batteries in bioelectrochemical systems. Chemical Engineering Journal, 524, Artikel 169515. https://doi.org/10.1016/j.cej.2025.169515
Palacios Jaramillo, P. A. & Kofoed, M. V. W. (2026). Performance of mesophilic and thermophilic acetogenic strains for CO2 -to-acetate production. Biomass and Bioenergy, 207, Artikel 108599. https://doi.org/10.1016/j.biombioe.2025.108599
Calegari, R. P., Schutgens, M., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Selenium and Cysteine Synergy: Enhancing methane production rates in hyperthermophilic methanogens. 1604. Abstract fra FEMS MICRO 2025, Milan, Italien.
Ahmmed, M. S., Otten, C. K., Kofoed, M. V. W. & Batstone, D. J. (2025). Impact of rheology on mass transfer and bubble diameter in wastewater treatment systems. Chemical Engineering Research and Design, 224, 523-532. https://doi.org/10.1016/j.cherd.2025.11.039
Ballegaard, A. S. R., Jensen, B. K., Aagaard, J. B., Miehe, M. & Spillner, E. (2026). Molecular targeting in the context of insect venom allergy: targets and perspectives. Allergo Journal International, 35(1), 8-14. https://doi.org/10.1007/s40629-025-00355-7
Falkeborg, M., Berton-Carabin, C. C. & Cheong, L. Z. (2016). Ionic Liquids in the Synthesis of Antioxidant Targeted Compounds. I Ionic Liquids in Lipid Processing and Analysis: Opportunities and Challenges (s. 317-346). Elsevier Inc.. https://doi.org/10.1016/B978-1-63067-047-4.00010-6
Falkeborg, M. F., Roda-Serrat, M. C., Burnæs, K. L. & Nielsen, A. L. D. (2018). Stabilising phycocyanin by anionic micelles. Food Chemistry, 239, 771-780. https://doi.org/10.1016/j.foodchem.2017.07.007
Wijesooriya, M. M., Calegari, R. P., Kofoed, M. V. W. & Ottosen, L. D. M. (2025). Exploring increased concentration of capture agent and methanogenic activity in Bio-Integrated Carbon Capture and Utilization (BICCU) reactors. Abstract ID: 4039 / Poster Number: 372.17P (770=. Poster-session præsenteret på FEMS MICRO 2025, Milan, Italien.
Wijesooriya, M. M., Kofoed, M. V. W., Ottosen, L. D. M., Nielsen, J. L. & Eskildsen, M. (2025). Exploring methanogen-carbon capture agent interactions in bio-integrated carbon capture and utilization (BICCU) into biomethane. O1A-002 (29). Abstract fra The 5th International Conference on Biogas Microbiology, Galway, Irland.
Nielsen, A. K. H., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Production of acetate from flue gas-CO2 by membrane-based bio-integrated carbon capture and utilization. Chemical Engineering Journal, 526, Artikel 170633. https://doi.org/10.1016/j.cej.2025.170633
Ma, Y., Smith, G., Haaijer-Vroomen, S. S. C. M., Olde Olthof, S., Welte, C. U. & Glodowska, M. (2025). Hexavalent Chromium Inhibits Nitrate-Dependent Anaerobic Methane Oxidation While Enriching Denitrifiers: Insights into Microbial Interactions for Simultaneous Methane, Nitrate, and Chromate Removal. ACS ES&T Water, 5(11), 6790-6800. https://doi.org/10.1021/acsestwater.5c00752
Brito, L. F., Luciano, D., Irla, M., Virant, D., Courtade, G. & Brautaset, T. (2025). Identification of MscS as a Key L-Glutamate Exporter in Bacillus methanolicus. Microbial Biotechnology, 18(10), Artikel e70252. https://doi.org/10.1111/1751-7915.70252
Ng, K. S., Busche, T., Rückert-Reed, C., Bambace, M. F., Sundekilde, U. K. & Schwab, C. (2025). Structural properties of short-chain carboxylic acids and alcohols relate to the molecular and physiological response of Salmonella enterica in an acidic environment. Applied Microbiology and Biotechnology, 109(1), Artikel 240. https://doi.org/10.1007/s00253-025-13608-w
Cid Gomes, L., da Rosa Garcia, A., Raeisi, F., de Oliveira Barbosa, L. C., Wasalabandara, D., Panakkal Manuel, A., Skovborg, N. L., Hostrup, E. T., Wojtasz, J., Gunnarsson, M., Ambye-Jensen, M. & Bernin, D. (2025). Green Biorefinery Side Stream as a Source of Chlorophyll Pigments, Lignin, and Cellulose for Textile Fibers. ACS Sustainable Chemistry and Engineering, 13(40), 16946-16957. https://doi.org/10.1021/acssuschemeng.5c06653
Zhang, N., Schwarz, E., Bittner, J. P., Jakobtorweihen, S., Smirnova, I., de María, P. D. & Kara, S. (2025). Rational Design of Hydrophilic Deep Eutectic Solvents to Outperform Oxidoreductase Activity in Aqueous Media. ChemCatChem, 17(19), Artikel e00986. https://doi.org/10.1002/cctc.202500986
Brito, L. F., Friis, M. K., Zhu, H., Brautaset, T., Wendisch, V. F. & Irla, M. K. (2025). Tools and Strategies for Engineering Bacillus methanolicus: A Versatile Thermophilic Platform for Sustainable Bioproduction from Methanol and Alternative Feedstocks. Synthetic Biology and Engineering, 3(4). https://doi.org/10.70322/sbe.2025.10016
Sommer, S. G., Christensen, M. L., Norddahl, B., Ambye-Jensen, M. & Roda-Serrat, M. C. (2025). Preface. I Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era (s. xi-xii). Cambridge University Press. https://doi.org/10.1017/9781108950831.001
Jeon, B. S., Kim, E. J., Seo, H., Kim, H., Shin, S., Schlaiß, C., Angenent, L. T., Kim, K. J. & Sang, B. I. (2025). Molecular Chain Elongation Mechanism for n-Caproate Biosynthesis by Megasphaera Hexanoica. Advanced Science, 12(44), Artikel e06069. https://doi.org/10.1002/advs.202506069
Schwab, C., Lang, H., Stegmüller, S., Hosek, J., Marietou, A., Huertas-Díaz, L., Li, Q., Krings, A. P. S., Zander, A., Kræmer Sundekilde, U. & Richling, E. (2025). Microbial Transformation of Dietary Glycerol Contributes to Intestinal Acrolein Formation and Urinary Excretion. Molecular Nutrition & Food Research, 69(24), Artikel e70289. https://doi.org/10.1002/mnfr.70289
Ambrose, H. W., Dalby, F. R., Lashkari, S. & Børsting, C. F. (2025). Can diet influence methane emissions from the manure of dairy cows?. Poster-session præsenteret på RAMIRAN 2025, Wageningen, Holland.
Dalby, F. R., Ambrose, H. W., Lashkari, S. & Børsting, C. F. (2025). Methane emission and organic matter degradation dynamics in cattle manure: Effects of diet and storage temperature. Poster-session præsenteret på RAMIRAN 2025, Wageningen, Holland.
Huertas-Díaz, L., Gezer, M. E., Marietou, A., Hosek, J., Thams, L., Dalgaard, L. B., Hansen, M. & Schwab, C. (2025). Megasphaera contributes to lactate-driven valerate production in the human gut. Microbiome, 13(1), Artikel 210. https://doi.org/10.1186/s40168-025-02207-6
Lara, A. R., Andersen, M. B., Madsen, A. A. V., Fønss, K. G., Irla, M., Taymaz-Nikerel, H., Martínez, L. M., Dicke, M. D., Mann, M., Magnus, J. B. & Gosset, G. (2025). Biomanufacturing Potential of Streamlined Cells. Biotechnology and Bioengineering, 122(12), 3309-3318. https://doi.org/10.1002/bit.70070
Fetzer, D. E. L., Coelho, J. A. P. & Ambye-Jensen, M. (2025). Extraction of lipids with supercritical CO2and downstream processing from grass-clover products from a green biorefinery demonstration platform. Journal of CO2 Utilization, 101, Artikel 103198. https://doi.org/10.1016/j.jcou.2025.103198
Boffe, P. M., Calegari, R. P., de Souza, D. C. R., da Conceição, P. S., Szymczak, D. A. & Tessaro, D. (2017). Potencial fitoextrator da espécie vegetal Helianthus annuus L. Em solo contaminado por chumbo. Espacios, 38(9), 8.
Mota, L. A., Calegari, R. P., Pinto, A. U., Sica, P., Amorim, D. J., Azevedo, R. A., Gaziola, S. A., Douradinho, R. S., Baptista, A. S. & Arthur, V. (2025). Selenium-biofortified spent yeast cultivated in corn hydrolysate: antioxidant response and biomass production under aerobic and anaerobic conditions. International Microbiology, 28(8), 2829-2844. https://doi.org/10.1007/s10123-025-00722-y
Sica, P., Prado, L. M. L. M., Granja, P., de Carvalho, E. M., Mattos, E. D. C., Calegari, R. P., Silverio, M., Martins, B. C. & Baptista, A. S. (2021). Effects of energy cane (Saccharum spp.) juice on corn ethanol (Zea mays) fermentation efficiency: Integration towards a more sustainable production. Fermentation , 7(1), Artikel 30. https://doi.org/10.3390/fermentation7010030

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Revideret 19.03.2026
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AU Engineering