Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Vaupel, S., Mau, R., Kara, S., Seitz, H., Kragl, U. & Meyer, J. (2023). 3D printed and stimulus responsive drug delivery systems based on synthetic polyelectrolyte hydrogels manufactured via digital light processing. Journal of Materials Chemistry B, 28(11), 6547-6559. https://doi.org/10.1039/D3TB00285C

Meyer, L-E., Horvath, D., Vaupel, S., Meyer, J., Alcalde, M. & Kara, S. (2023). A 3D printable synthetic hydrogel as an immobilization matrix for continuous synthesis with fungal peroxygenases. Reaction Chemistry & Engineering , 8(5), 984-988. Advance online publication. https://doi.org/10.1039/d3re00058c

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2023). Additives and methods for the mitigation of methane emission from stored liquid manure. Biosystems Engineering, 229, 209-245. https://doi.org/10.1016/j.biosystemseng.2023.03.015

Ye, S., Cheng, Y., Guo, Z., Wang, X. & Wei , W. (2023). A Lipid Toolbox of Sugar Alcohol Fatty Acid Monoesters for Single-component Lipid Nanoparticles with Temperature-controlled Release. Colloids and Surfaces B: Biointerfaces, 228, Article 113426. https://doi.org/10.1016/j.colsurfb.2023.113426

Li, Z., Anankanbil, S., Li, L., Lyu, J., Nadzieja, M. & Guo, Z. (2023). Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions. Food Hydrocolloids, 134, Article 108014. https://doi.org/10.1016/j.foodhyd.2022.108014

Wang, X., Lv, G., Zhang, Y., Yu, Y., Wang, X., Peixoto, L., Qian, C. & Pang, H. (2023). Annual burying of straw after pelletizing: A novel and feasible way to improve soil fertility and productivity in Northeast China. Soil and Tillage Research, 230, Article 105699. https://doi.org/10.1016/j.still.2023.105699

Bogojevic, O., Zhang, Y., Daugaard Wolff, C., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2023). A sustainable and regioselective synthesis of Hemi-bis(monoacylglycero)phosphates and bis(diacylglycero)phosphates. iScience, 26(7), Article 107075. https://doi.org/10.1016/j.isci.2023.107075

Petermeier, P., Kohlfuerst, C., Torvisco, A., Fischer, R., Mata, A., Dalllinger, D., Kappe, C. O., Schrittwieser, J. & Kroutil, W. (2023). Asymmetric Synthesis of Trisubstituted Piperidines via Biocatalytic Transamination and Diastereoselective Enamine or Imine Reduction. Advanced Synthesis & Catalysis, 365(13), 2188-2202. https://doi.org/10.1002/adsc.202300050

Domínguez de María, P., Kara, S. & Gallou, F. (2023). Biocatalysis in Water or in Non-Conventional Media? Adding the CO2 Production for the Debate. Molecules, 28(18), Article 6452. https://doi.org/10.3390/molecules28186452

Li, L., Li, Z., Balle, T., Liu, G. & Guo, Z. (2023). Biosynthesis of pectic oligosaccharide-based amphiphiles as novel stabilizers of nanoemulsions by coupling enzymatic depolymerization with alkyl/alkenyl succinylation. Food Hydrocolloids, 139, Article 108574. https://doi.org/10.1016/j.foodhyd.2023.108574

Huertas-Díaz, L., Kyhnau, R., Ingribelli, E., Neuzil-Bunesova, V., Li, Q., Sasaki, M., Lauener, R. P., Roduit, C., Frei, R., CK-CARE study group, Sundekilde, U. & Schwab, C. (2023). Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces. Gut Microbes, 15(1), Article 2241209. https://doi.org/10.1080/19490976.2023.2241209

Xiong, X., Shang, Y., Bai, L., Luo, S., Seviour, T. W., Guo, Z., Ottosen, L. D. M. & Wei, Z. (2023). Complete Defluorination of Perfluorooctanoic Acid (PFOA) by Ultrasonic Pyrolysis Towards Zero Fluoro-Pollution. Water Research, 235, Article 119829. https://doi.org/10.1016/j.watres.2023.119829

Vernet, G., Ma, Y., Zhang, N. & Kara, S. (2023). Cross-linked enzyme aggregates of fusion enzymes in microaqueous organic media. ChemBioChem, 24(8), Article e202200794. https://doi.org/10.1002/cbic.202200794

Semproli, R., Chanquia, S. N., Bittner, J. P., Müller, S., Domínguez de María, P., Kara, S. & Ubiali, D. (2023). Deep Eutectic Solvents for the Enzymatic Synthesis of Sugar Esters: A Generalizable Strategy? ACS Sustainable Chemistry & Engineering, 11(15), 5926-5936. https://doi.org/10.1021/acssuschemeng.2c07607

T. M. Henehan, G., Ryan, B. J., Eser, B. E., Li, N., Guo, Z. & Kinsella, G. K. (2023). Editorial: Green chemistry biocatalysis. Frontiers in Bioengineering and Biotechnology, 11, Article 1158275. https://doi.org/10.3389/fbioe.2023.1158275

Ye, Z., Tan, C., Huang, X., Ouyang, Y., Yang, L., Wang, Z. & Dong, M. (2023). Emerging MoS₂ Wafer-Scale Technique for Integrated Circuits. Nano-Micro Letters, 15(1), Article 38. https://doi.org/10.1007/s40820-022-01010-4

Sieborg, M. U., Ottosen, L. D. M. & Kofoed, M. V. W. (2023). Enhanced process control of trickle-bed reactors for biomethanation by vertical profiling directed by hydrogen microsensor monitoring. Bioresource Technology, 384, Article 129242. https://doi.org/10.1016/j.biortech.2023.129242

Wang, X., Ge, J., He, M., Li, Q., Cai, J., Zhou, Q., Zhong, Y., Wollenweber, B. & Jiang, D. (2023). Enhancing crop resilience: Understanding the role of drought priming in wheat stress response. Field Crops Research, 302, Article 109083. https://doi.org/10.1016/j.fcr.2023.109083

Alphand, V., van Berkel, W. J. H., Jurkas, V., Kara, S., Kourist, R., Kroutil, W., Mascia, F., M. Nowaczyk, M., Paul, C. E., Schmidt, S., Spasic, J., Tamagnini, P. & Winkler, C. K. (2023). Exciting Enzymes: Current State and Future Perspective of Photobiocatalysis. ChemPhotoChem, 7(7), Article e202200325. Advance online publication. https://doi.org/10.1002/cptc.202200325

Hansen, N. P., Jensen, S. K., Johansen, M., Hellwing, A. L. F., Ambye-Jensen, M., Larsen, M. & Weisbjerg, M. R. (2023). Fiber digestibility and protein value of pulp silage for lactating dairy cows: Effects of wet fractionation by screw pressing of perennial ryegrass. Journal of Dairy Science, 106(2), 937-953. https://doi.org/10.3168/jds.2022-21851

Gao, P., Zhang, X., Huang, X., Chen, Z., Marietou, A., Holmkvist, L., Qu, L., Finster, K. & Gong, X. (2023). Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. BMC Genomics, 24(1), Article 209. https://doi.org/10.1186/s12864-023-09297-2

Gaffey, J., Rajauria, G., McMahon, H., Ravindran, R., Dominguez, C., Ambye-Jensen, M., Souza, M. F., Meers, E., Aragonés, M. M., Skunca, D. & Sanders, J. P. M. (2023). Green Biorefinery systems for the production of climate-smart sustainable products from grasses, legumes and green crop residues. Biotechnology Advances, 66, Article 108168. https://doi.org/10.1016/j.biotechadv.2023.108168

Vilela, N., Tomazetto, G., Gonçalves, T. A., Sodré, V., Persinoti, G. F., Moraes, E. C., de Oliveira, A. H. C., da Silva, S. N., Fill, T. P., Damasio, A. & Squina, F. M. (2023). Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production. Biotechnology for Biofuels and Bioproducts, 16(1), Article 5. https://doi.org/10.1186/s13068-022-02251-6

Stødkilde-Jørgensen, L., Mogensen, L., Bache, J. K., Ambye-Jensen, M., Vinther, J. & Jensen, S. K. (2023). Local protein sources for growing-finishing pigs and their effects on pig performance, sensory quality and climate impact of the produced pork. Livestock Science, 267, Article 105128. https://doi.org/10.1016/j.livsci.2022.105128

Klein, V. J., Brito, L. F., Perez-Garcia, F., Brautaset, T. & Irla, M. (2023). Metabolic engineering of thermophilic Bacillus methanolicus for riboflavin overproduction from methanol. Microbial Biotechnology, 16(5), 1011-1026. https://doi.org/10.1111/1751-7915.14239

Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, ZL., van Santen, JA., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, HE. ... Medema, MH. (2023). MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research, 51(D1), D603-D610. Article gkac1049. Advance online publication. https://doi.org/10.1093/nar/gkac1049

Santos Oliveira, J. M., Poulsen, J. S., Foresti, E. & Nielsen, J. L. (2023). Microbial communities and metabolic pathways involved in reductive decolorization of an azo dye in a two-stage AD system. Chemosphere, 310, Article 136731. https://doi.org/10.1016/j.chemosphere.2022.136731

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. Aarhus Universitet.

Li, Z., Anankanbil, S., Pedersen, J. N., Nadzieja, M. & Guo, Z. (2023). Nanocellulose fractionated from TEMPO-mediated oxidation of cellulose as an energy-free ingredient for stabilizing Pickering emulsion. Biochemical Engineering Journal, 191, Article 108795. https://doi.org/10.1016/j.bej.2022.108795

Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, H., Poulsen, T. & Tørring, T. (2023). Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms. Microbiology spectrum, 11(4), Article e0062523. Advance online publication. https://doi.org/10.1128/spectrum.00625-23

Pourjafar, M., Saidijam, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2023). Surfaceome Profiling Suggests Potential of Anti-MUC1×EGFR Bispecific Antibody for Breast Cancer Targeted Therapy. Journal of Immunotherapy, 46(7), 245-261. https://doi.org/10.1097/CJI.0000000000000482

Dalby, F. R., Kofoed, M. V. W., Guldberg, L. B. & Feilberg, A. (2022). Acidification with inorganic and organic acids to reduce greenhouse gas emission from pig slurry: Acidification with inorganic and organic acids to reduce greenhouse gas emission from pig slurry. Abstract from 8th International Greenhouse Gas & Animal Agriculture Conference, Orlando, United States.

Meyer, L-E., Andersen, M. B. & Kara, S. (2022). A Deep Eutectic Solvent Thermomorphic Multiphasic System for Biocatalytic Applications. Angewandte Chemie International Edition, 61(31), Article e202203823. Advance online publication. https://doi.org/10.1002/anie.202203823

De Santis, P., Petrovai, N., Meyer, L-E., Hobisch, M. & Kara, S. (2022). A holistic carrier-bound immobilization approach for unspecific peroxygenase. Frontiers in chemistry, 10, Article 985997. https://doi.org/10.3389/fchem.2022.985997

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Article 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

Gonçalves, T. A., Sodré, V., da Silva, S. N., Vilela, N., Tomazetto, G., Araujo, J. N., Muniz, J. R. C., Fill, T. P., Damasio, A., Garcia, W. & Squina, F. M. (2022). Applying biochemical and structural characterization of hydroxycinnamate catabolic enzymes from soil metagenome for lignin valorization strategies. Applied Microbiology and Biotechnology, 106(7), 2503-2516. https://doi.org/10.1007/s00253-022-11885-3

Rocha Martin, V. N., Del’Homme, C., Chassard, C., Schwab, C., Braegger, C., Bernalier-Donadille, A. & Lacroix, C. (2022). A proof of concept infant-microbiota associated rat model for studying the role of gut microbiota and alleviation potential of Cutibacterium avidum in infant colic. Frontiers in nutrition, 9, Article 902159. https://doi.org/10.3389/fnut.2022.902159

Zhang, Y., Pedersen, J. N., Eser, B. E. & Guo, Z. (2022). Biodegradation of polyethylene and polystyrene: From microbial deterioration to enzyme discovery. Biotechnology Advances, 60, Article 107991. https://doi.org/10.1016/j.biotechadv.2022.107991

Santos Oliveira, J. M., Sabatini, C. A., Santos-Neto, A. J. & Foresti, E. (2022). Broken into pieces: the challenges of determining sulfonated azo dyes in biological reactor effluents using LC-ESI-MS/MS analysis. Environmental Pollution, 318, Article 120877. https://doi.org/10.1016/j.envpol.2022.120877

Harada, L. K., Silva, E. C., Rossi, F. P. N., Cieza, B., Oliveira, T. J., Pereira, C., Tomazetto, G., Silva, B. B., M. Squina, F., Vila, M. M. D. C., Setubal, J., Ha, T., da Silva, A. M. & Balcao, V. M. (2022). Characterization and in vitro testing of newly isolated lytic bacteriophages for the biocontrol of Pseudomonas aeruginosa. Future Microbiology, 17(2), 111-141. https://doi.org/10.2217/fmb-2021-0027

Ng, K-S., Chang, Y-C., Chen, Y-P., Lo, Y-H., Wang, S-Y. & Chen, M-J. (2022). Characterization of exopolysaccharide-producing lactic acid bacteria from Taiwanese ropy fermented milk and their application in low-fat fermented milk. Animal Bioscience, 35(2), 281-289. https://doi.org/10.5713/ab.21.0251

Pourjafar, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2022). Construction, expression and functional characterization of an engineered antibody against tumor antigen MUC-1C. Protein Expression and Purification, 199, Article 106148. https://doi.org/10.1016/j.pep.2022.106148

Meyer, L-E., Fogtmann Hauge, B., Müller Kvorning, T., De Santis, P. & Kara, S. (2022). Continuous oxyfunctionalizations catalyzed by unspecific peroxygenase. Catalysis Science & Technology, 12(21), 6473-6485. Advance online publication. https://doi.org/10.1039/D2CY00650B

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2022). Coupling the benefits of grassland crops and green biorefining to produce protein, materials and services for the green transition. Grass and Forage Science, 77(4), 295-306. https://doi.org/10.1111/gfs.12594

Jørgensen, U., Jensen, S. K. & Ambye-Jensen, M. (2022). Coupling the benefits of grassland crops and green biorefining to produce protein, products and services for the green transition. In I. Delaby, R. Beaumont, V. Brocard, S. Lemauviel-Lavenant, S. Plantureux, F. Vertès & J. I. Peyraud (Eds.), Grassland at the heart of circular and sustainable food systems (pp. 83-94). INRAE. https://www.europeangrassland.org/fileadmin/documents/Infos/Printed_Matter/Proceedings/EGF2022.pdf

Abd El-Maksoud, A. A., Cheng, W., Petersen, S. V., Pandiselvam, R. & Guo, Z. (2022). Covalent phenolic acid-grafted β-lactoglobulin conjugates: Synthesis, characterization, and evaluation of their multifunctional properties. LWT, 172, Article 114215. https://doi.org/10.1016/j.lwt.2022.114215

Bogojevic, O., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2022). Designer phospholipids – structural retrieval, chemo-/bio- synthesis and isotopic labeling. Biotechnology Advances, 60, Article 108025. https://doi.org/10.1016/j.biotechadv.2022.108025

Petermeier, P., Bittner, J. P., Müller, S., Byström, E. & Kara, S. (2022). Design of a green chemoenzymatic cascade for scalable synthesis of bio-based styrene alternatives. Green Chemistry, 24(18), 6889-6899. Advance online publication. https://doi.org/10.1039/d2gc01629j

Ma, Y., Zhang, N., Vernet, G. & Kara, S. (2022). Design of Fusion Enzymes for Biocatalytic Applications in Aqueous and Non-aqueous Media. Frontiers in Bioengineering and Biotechnology, 10, Article 944226. https://doi.org/10.3389/fbioe.2022.944226

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Article e202101625. https://doi.org/10.1002/cctc.202101625

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