Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Nazipi Bushi, S., Lund, M. B., Sandfeld, T., Nørskov, S. S., Fruergaard, S., Glasius, M., Bilde, T. & Schramm, A. (2025). A modified iChip for in situ cultivation of bacteria in arid environments. Applied and Environmental Microbiology, 91(2), e0132524. Article e0132524. https://doi.org/10.1128/aem.01325-24

Milić, M., Vernet, G., Le, H. Y., Zhang, N., Byström, E., Domínguez de María, P. & Kara, S. (2025). Assessing the Industrial Edge of the Lipase-Mediated Oxidation of 2,5-Diformylfuran to 2,5-Furandicarboxylic Acid: Rotating Bed Reactors, an “Acyl-Donor-Free” Oxidation Concept, and Environmental Aspects. Organic Process Research and Development, 29(4), 1058-1066. https://doi.org/10.1021/acs.oprd.4c00474

Junker, A. L., Juve, J. M. A., Bai, L., Qvist Christensen, C. S., Ahrens, L., Cousins, I. T., Ateia, M. & Wei, Z. (2025). Best Practices for Experimental Design, Testing, and Reporting of Aqueous PFAS-Degrading Technologies. Environmental Science and Technology, 59(18), 8939-8950. https://doi.org/10.1021/acs.est.4c08571

Šáner, A., Ambye-Jensen, M., Jensen, S. K., Vorkamp, K., Ceccato, M. & Smith, A. M. (2025). Biochar produced from bio-refined herbaceous fibre residue for feed and technical purposes. Journal of Analytical and Applied Pyrolysis, 187, Article 107004. https://doi.org/10.1016/j.jaap.2025.107004

Plesner, T. J., Wang, F., Ouyang, Y., Khazaee, Z., Zhou, P., Zhang, M., Eser, B. E., Zhang, Y. & Guo, Z. (2025). Cooperative action from Cu-centered MOF and a laccase for enhanced decolorization of synthetic dyes. Biochemical Engineering Journal, 221, Article 109807. https://doi.org/10.1016/j.bej.2025.109807

Merrild, A., Svenningsen, T., Chevrette, M. & Tørring, T. (2025). Evolution-Guided Discovery of Antimycobacterial Triculamin-Like Lasso Peptides. Angewandte Chemie International Edition, 64(20), Article e202425134. https://doi.org/10.1002/anie.202425134

Struwe, H., Grimm, C., Dräger, G., Beutel, S., Alcalde, M., Kirschning, A. & Kara, S. (2025). Expanding the “Terpenome”: Applications of Unspecific Peroxygenases (UPOs) in Oxidations of Unnatural Terpenoids. ChemCatChem, 17(1), Article e202401414. https://doi.org/10.1002/cctc.202401414

Ma, Y., Vernet, G., Zhang, N. & Kara, S. (2025). Exploring DES-Water Mixtures for Improved ADH-CHMO Fusion Enzyme Performance in Linear Cascades. ChemCatChem, 17(5), Article e202401792. https://doi.org/10.1002/cctc.202401792

Sieborg, M. U. & Kofoed, M. V. W. (2025). Gamle processer, nye muligheder: Nyt kemisk-biologisk koncept til CO2-fangst og omdannelse. Dansk Kemi, 106(2), 12-14. Article 106. https://ipaper.ipapercms.dk/TechMedia/DanskKemi/2025/2/?page=12

Ouyang, Y., Zhang, C., Wang, J., Guo, Z., Wang, Z. & Dong, M. (2025). Gate-Tunable Dual-Mode Optoelectronic Device for Self-Powered Photodetector and Optoelectronic Synapse. Advanced Science, 12(17), Article 2416259. https://doi.org/10.1002/advs.202416259

Stødkilde, L., Jensen, M. S., Jørgensen, E. T., Ambye-Jensen, M. & Eskildsen, M. (2025). Grass-based feeding strategies for organic growing-finishing pigs during temperate summer conditions. Livestock Science, 298, Article 105748. https://doi.org/10.1016/j.livsci.2025.105748

Peng, S., Zhang, C., Wei, Y., Ouyang, Y., Han, J., Li, C., Dong, M. & Wang, J. (2025). High performance self-powered PbSe/WSe₂ p-n heterojunction photodetector for image sensing. Journal of Materials Science and Technology, 225, 125-132. https://doi.org/10.1016/j.jmst.2024.11.025

Muñoz-Duarte, L., Chakraborty, S., Grøn, L. V., Bambace, M. F., Catalano, J. & Philips, J. (2025). H₂ Consumption by Various Acetogenic Bacteria Follows First-Order Kinetics up to H₂ Saturation. Biotechnology and Bioengineering, 122(4), 804-816. https://doi.org/10.1002/bit.28904

Li, Q., Marietou, A., Andersen, F. F., Hosek, J., Scavenius, C., Zhang, J. & Schwab, C. (2025). In vitro investigations on the impact of fermented dairy constituents on fecal microbiota composition and fermentation activity. Microbiology Spectrum, 13(3), e0219324. https://doi.org/10.1128/spectrum.02193-24

Sørensen, M. F., Andrade, T. A., dos Passos, N. H. M. & Ambye-Jensen, M. (2025). Influence of substrate concentration on single-cell protein production from green biorefinery residual juice. Bioresource Technology Reports, 30, Article 102151. https://doi.org/10.1016/j.biteb.2025.102151

Huertas-Díaz, L., Vestergaard, L. G., Marietou, A., Irla, M., Behr, J., Somoza, M. M., Feilberg, A. & Schwab, C. (2025). Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens. Gut Pathogens, 17(1), Article 23. https://doi.org/10.1186/s13099-025-00689-1

Elvan Gezer, M., Gravlund Fønss, K., Bambace, M. F., Marietou, A., Sandberg Overby, S., Sundekilde, U. & Schwab, C. (2025). Investigation on L-rhamnose metabolism of Loigolactobacillus coryniformis subsp. coryniformis DSM 20001 and its propionate-containing fermentates. Applied and Environmental Microbiology, 91(1), e0161324. Article e0161324. https://doi.org/10.1128/aem.01613-24

Mekureyaw, M. F., Junker, A., Bai, L., Zhang, Y., Wei, Z. & Guo, Z. (2025). Laccase based per- and polyfluoroalkyl substances degradation: Status and future perspectives. Water Research, 271, Article 122888. https://doi.org/10.1016/j.watres.2024.122888

Temovska, M., Hegner, R., Ortiz-Ardila, A. E., Usack, J. G. & Angenent, L. T. (2025). Lactate production from lactose-rich wastewater: A comparative study on reactor configurations to maximize conversion rates and efficiencies. Water Research, 278, Article 123365. https://doi.org/10.1016/j.watres.2025.123365

Ma, Y., Bittner, J. P., Vernet, G., Zhang, N. & Kara, S. (2025). Linkers in Action: Exploring Fusion Enzymes for Oxyfunctionlizations in Non-Conventional Media Through Experiments and Simulations. ChemCatChem, 17(9), Article e202401893. https://doi.org/10.1002/cctc.202401893

Andrade, T. A., López Fetzer, D. E., Hachow Motta dos Passos, N. & Ambye-Jensen, M. (2025). Maceration and fractionation technologies in a demonstration-scale green biorefinery: Proteins, sugars, and lipids extraction and energy efficiency. Industrial Crops and Products, 223, Article 120142. https://doi.org/10.1016/j.indcrop.2024.120142

Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D'Agostino, P. M., de Rond, T., Del Pup, E., Duncan, K. R., Gu, W. ... Medema, M. H. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53(D1), D678-D690. https://doi.org/10.1093/nar/gkae1115

Timmis, K., Karahan, Z. C., Ramos, J. L., Koren, O., Pérez-Cobas, A. E., Steward, K., de Lorenzo, V., Caselli, E., Douglas, M., Schwab, C., Rivero, V., Giraldo, R., Garmendia, J., Turner, R. J., Perlmutter, J., Borrero de Acuña, J. M., Nikel, P. I., Bonnet, J., Sessitsch, A. ... Häggblom, M. (2025). Microbes Saving Lives and Reducing Suffering. Microbial Biotechnology, 18(1), Article e70068. https://doi.org/10.1111/1751-7915.70068

Christensen, B., Krüger, T. F., Hjorth, T. P., Buhl, E. H. & Sørensen, E. S. (2025). Milk osteopontin mediates zinc uptake in intestinal cells in the presence of phytic acid. International Dairy Journal, 161, Article 106113. https://doi.org/10.1016/j.idairyj.2024.106113

Bittner, J. P., Zhang, N., Domínguez de María, P., Smirnova, I., Kara, S. & Jakobtorweihen, S. (2025). Molecular Understanding of Activity Changes of Alcohol Dehydrogenase in Deep Eutectic Solvents. Journal of Physical Chemistry B, 129(4), 1197-1213. https://doi.org/10.1021/acs.jpcb.4c06523

Gonzalez-Serrano, D. J., Benmebarek, I. E., Hadidi, M., Bechtner, J. D., Martinez, M. M., Cabañas, B. & Moreno, A. (2025). Optimization of microwave-assisted hydrothermal extraction of homogalacturonan-rich, low methoxyl pectin from discarded garlic peels: Comparative macromolecular and functional analysis with conventional extraction. Food Hydrocolloids, 166, Article 111324. https://doi.org/10.1016/j.foodhyd.2025.111324

Mathiasen, S. S., Guo, Z., Fritzen, A. M., Kiens, B., Kleinert, M. & Wiking, L. (2025). Physical properties and stability of milk fat retentate fraction from short-path distillation. International Dairy Journal, 169, Article 106310. https://doi.org/10.1016/j.idairyj.2025.106310

Li, Z., Zhang, Y., Balle, T., Eser, B. E., Fang, Y. & Guo, Z. (2025). Preparation of Cello-Oligosaccharides by Precise-Controlled Enzymatic Depolymerization and Its Amphiphilic Functionalization for High-Oil Load Emulsification. Journal of Agricultural and Food Chemistry, 73(2), 1458–1467. https://doi.org/10.1021/acs.jafc.4c08886

Zhang, N., Lahmann, V., Bittner, J. P., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2025). Redox Biocatalysis in Lidocaine-Based Hydrophobic Deep Eutectic Solvents: Non-Conventional Media Outperform Aqueous Conditions. ChemSusChem, 18(6), Article e202402075. https://doi.org/10.1002/cssc.202402075

Xie, J., Veigel, M., Schmidt, H. & Gänzle, M. (2025). Selection of Bacillus spp. as fermentation cultures for production of plant-based cheese analogues. International Journal of Food Microbiology, 435, Article 111178. https://doi.org/10.1016/j.ijfoodmicro.2025.111178

Pohlen, L., García, E., Martínez, L. M., Flores, N., Büchs, J., Gosset, G. & Lara, A. R. (2025). Sigma Factors as Potential Targets to Enhance Recombinant Protein Expression. Biotechnology and Bioengineering, 122(6), 1598-1607. https://doi.org/10.1002/bit.28958

Xiong, X., Luo, Z., Luo, S., Bai, L., Shang, Y., Junker, A. L. & Wei, Z. (2025). Sustained hydrated electron production for enhanced reductive defluorination of PFAS in groundwater. Water Research, 279, Article 123401. https://doi.org/10.1016/j.watres.2025.123401

Irla, M., Nærdal, I., Virant, D., Brautaset, T., Busche, T., Goranovič, D., Haupka, C., Heux, S., Kosec, G., Rückert-Reed, C., Wendisch, V. F., Brito, L. F. & Vicente, C. M. (2025). Systems-level analysis provides insights on methanol-based production of L-glutamate and its decarboxylation product γ-aminobutyric acid by Bacillus methanolicus. Metabolic Engineering, 91, 389-404. https://doi.org/10.1016/j.ymben.2025.06.002

Alamia, A., Ambrose, H. W. & Rattigan, E. (2025). Techno-Economic Integration of Power-to-X Methanation in Biogas Systems: System-Level Optimization Based on Experimental Research. Poster session presented at 33rd European Biomass Conference & Exhibition , Valencia, Spain.

Palacios Jaramillo, P. A., Sieborg, M. U., Kuipers, S. B., Fruergaard, S. & Kofoed, M. V. W. (2025). Temperature tactics: Targeting acetate or methane production in autotrophic H2/CO2 conversion with mixed cultures. Biochemical Engineering Journal, 214, Article 109574. https://doi.org/10.1016/j.bej.2024.109574

Lærke, H. N., Jensen, S. K., Andrade, T. A., Ambye-Jensen, M., Jørgensen, E. T. & Stødkilde, L. (2025). Towards efficient grass-clover biorefining: Influence of harvesting methods and delayed processing. Animal Feed Science and Technology, 324, Article 116336. https://doi.org/10.1016/j.anifeedsci.2025.116336

Saad, A., Bai, L., Christensen, F. M. S., Luo, S., Bentien, A., Ashokkumar, M. & Wei, Z. (2025). Ultrasound-enhanced alkaline water splitting with fast bubble release and sustained Ni catalysts. Applied Catalysis B: Environmental, 370, Article 125152. https://doi.org/10.1016/j.apcatb.2025.125152

Wijesooriya, M. M., Vithanage, M. & Wijesekara, H. (2025). Underestimated Threats: Personal Care Products (PCPs) in Marine and Coastal Environments. In M. Vithanage, S. M. Samarasekara, B. D. James & C. M. Reddy (Eds.), Coastal and Marine Pollution: Source to Sink, Mitigation and Management (pp. 225-248). Wiley. https://doi.org/10.1002/9781394237029.ch12

Sieborg, M. U., Engelbrecht, N., Singh, A., Schnürer, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Unraveling the effects of temperature on mass transfer and microbiology in thermophilic and extreme thermophilic trickle bed biomethanation reactors. Chemical Engineering Journal, 509, Article 161179. https://doi.org/10.1016/j.cej.2025.161179

Bogojevic, O., Zhang, Y., Wolff, C. D., Johnsen, N. K., Arevång, C. & Guo, Z. (2024). A Chemo-Enzymatic Cascade Strategy for the Synthesis of Phosphatidylcholine Incorporated with Structurally Diverse FAHFAs. The Journal of Organic Chemistry, 89(2), 1035-1044. https://doi.org/10.1021/acs.joc.3c02131

Chanquia, S. N., Bittner, J. P., Santner, P., Szabó, L. K., Madsen, J. S., Øhlenschlæger, M. L., Sarvari, A. G., Merrild, A. H., Fo̷nss, K. G., Jaron, D., Lutz, L., Kara, S. & Eser, B. E. (2024). Active-Site Mutagenesis of Fatty Acid Photodecarboxylase: Experimental and Computational Insight into Substrate Chain-Length Specificity. ACS Catalysis, 14(21), 15837-15849. https://doi.org/10.1021/acscatal.4c02970

Benfeldt, F. V., Wang, F., Bredahl, N., Gao, R., Guo, Z. & Eser, B. E. (2024). A Highly Efficient Ferulic Acid Decarboxylase from Capronia coronata: Characterization and Biocatalytic Applications. (pp. xxx-xxx). ChemRxiv https://doi.org/10.26434/chemrxiv-2024-0npph-v2

Bravo-Olín, J., Martínez-Carreón, S. A., Francisco-Solano, E., Lara, A. R. & Beltran-Vargas, N. E. (2024). Analysis of the role of perfusion, mechanical, and electrical stimulation in bioreactors for cardiac tissue engineering. Bioprocess and Biosystems Engineering, 47(6), 767-839. https://doi.org/10.1007/s00449-024-03004-5

Lambrecht, S., Biermann, M., Kara, S., Jopp, S. & Meyer, J. (2024). A novel characterization technique for hydrogels - in situ rheology-Raman spectroscopy for gelation and polymerization tracking. Materials Advances, 5(17), 6957-6966. https://doi.org/10.1039/d4ma00543k

Lambrecht, S., Gazizova, A., Kara, S., Meyer, J. & Jopp, S. (2024). Antimicrobial properties and biocompatibility of semi-synthetic carbohydrate-based ionic hydrogels. RSC Advances, 14(42), 30719-30731. https://doi.org/10.1039/d4ra05695g

Gaffey, J., Matinez, A. A., Andrade, T. A., Ambye-Jensen, M., Bishop, G., Collins, M. N. & Styles, D. (2024). Assessing the environmental footprint of alternative green biorefinery protein extraction techniques from grasses and legumes. Science of the Total Environment, 949, Article 175035. https://doi.org/10.1016/j.scitotenv.2024.175035

Sadegh, N., Uniacke, J., Feilberg, A. & Kofoed, M. V. W. (2024). Assessment of transient hydrogen sulfide peak emissions caused by biogas plant operation. Journal of Cleaner Production, 468, Article 142920. https://doi.org/10.1016/j.jclepro.2024.142920

Tjell, A. Ø., Meyer, L.-E., Jud, B., Kara, S. & Mayr, T. (2024). At-line monitoring of hydrogen peroxide released from its photocatalytic and continuous synthesis. Reaction Chemistry & Engineering , 9(4), 777-781. https://doi.org/10.1039/d3re00659j

Zhang, N., Domínguez de María, P. & Kara, S. (2024). Biocatalysis for the Synthesis of Active Pharmaceutical Ingredients in Deep Eutectic Solvents: State-of-the-Art and Prospects. Catalysts, 14(1), Article 84. https://doi.org/10.3390/catal14010084

Anand, M., Panigrahi, S., Kofoed, M. V. W., Aghababaei, R. & Agarwala, S. (2024). Bioinspired poly(vinyl alcohol) films with tunable adhesion and self-healing for biodegradable electronics and beyond. Sustainable Materials and Technologies, 41, Article e01084. https://doi.org/10.1016/j.susmat.2024.e01084

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