Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Fetzer, D. E. L., Coelho, J. A. P. & Ambye-Jensen, M. (2025). Extraction of lipids with supercritical CO₂and downstream processing from grass-clover products from a green biorefinery demonstration platform. Journal of CO2 Utilization, 101, Article 103198. https://doi.org/10.1016/j.jcou.2025.103198

Boffe, P. M., Calegari, R. P., de Souza, D. C. R., da Conceição, P. S., Szymczak, D. A. & Tessaro, D. (2017). Potencial fitoextrator da espécie vegetal Helianthus annuus L. Em solo contaminado por chumbo. Espacios, 38(9), 8.

Sica, P., Prado, L. M. L. M., Granja, P., de Carvalho, E. M., Mattos, E. D. C., Calegari, R. P., Silverio, M., Martins, B. C. & Baptista, A. S. (2021). Effects of energy cane (Saccharum spp.) juice on corn ethanol (Zea mays) fermentation efficiency: Integration towards a more sustainable production. Fermentation , 7(1), Article 30. https://doi.org/10.3390/fermentation7010030

Amorim Mota, L., Maria da Silva, A. P., Alberto da Silva, E., Maria Ferreira Lima Leite, G., Perez Calegari, R. & Sampaio Baptista, A. (2022). Ability of the Saccharomyces cerevisiae Y904 to tolerate and adapt to high concentrations of selenium. Brazilian Journal of Biosystems Engineering, 16, Article 1066. https://doi.org/10.18011/bioeng.2022.v16.1066

Ambrose, H. W., Feilberg, A., Schwab, C. & Kofoed, M. V. W. (2025). Impact of chemical and biological additives on microbial community and methane emissions in pig slurry storage. 41. Abstract from 13th International Symposium on Anaerobic Microbiology, Leipzig, Germany.

Jensen, T. B., Anand, M., Batstone, D. & Kofoed, M. V. W. (2025). Here comes the sun: intermittent operation of hydrogen-based in situ biomethanation at pilot-scale. Applied Energy, 401(Part A), Article 126601. https://doi.org/10.1016/j.apenergy.2025.126601

Ambrose, H. W., Bambace, M. F., Marietou, A., Hosek, J., Feilberg, A., Kofoed, M. V. W. & Schwab, C. (2025). Novel Biological Approach to Mitigate Methane Emissions from Livestock Slurry through Microbial Conversion of Glycerol. Environmental Science & Technology, 59(38), 20512-20525. https://doi.org/10.1021/acs.est.4c12999

Calegari, R. P., Mendes, K. F., Martins, B. C., Pimpinato, R. F., Baptista, A. S. & Tornisielo, V. L. (2018). Removal of diuron and hexazinone from public water supply using a filter system. Planta Daninha, 36, Article e018183662. https://doi.org/10.1590/S0100-83582018360100147

Silva, A. P. M. D., Sica, P., Pires, L. D. A. N., Spironello, L., Mota, L. A., Peixoto, G. T., Calegari, R. P., Basso, T. O., Tonso, A., Gomes, M. P., Somessari, S. L., Duarte, H. G., Somessari, E. S. R., Carvalho, R. D. S. & Baptista, A. S. (2023). Integration of Corn and Cane for Ethanol Production: Effects of Lactobacilli Contamination on Fermentative Parameters and Use of Ionizing Radiation Treatment for Disinfection. Fermentation , 9(2), Article 89. https://doi.org/10.3390/fermentation9020089

Fieira, C., Oliveira, F., Calegari, R. P., Machado, A. & Coelho, A. R. (2013). In vitro and in vivo antifungal activity of natural inhibitors against Penicillium expansum. Food Science and Technology, 33(SUPPL.1), 40-46. https://doi.org/10.1590/S0101-20612013000500007

Silverio, M. S., Calegari, R. P., Leite, G. M. F. L., Prado, L. M. L. M., Martins, B. C., da Silva, E. A., Neto, J. P., Gomig, A. & Baptista, A. S. (2021). VINASSE FROM THE BRAZILIAN LIGNOCELLULOSIC ETHANOL PROCESS: CHEMICAL COMPOSITION AND POTENTIAL FOR BIOPROCESSES. Brazilian Journal of Biosystems Engineering, 15(1), 42-68. https://doi.org/10.18011/bioeng2021v15n1p42-68

Anacleto, T. M., Oliveira, H. R., da Silva, C. F. C., Calegari, R. P., Rocha, M. E., Figueira, T. A., Silva, M. C., Masuda, L. S. M., Paquet, R., de Oliveira, V. P. & Enrich-Prast, A. (2022). ANAEROBIC DIGESTION AS A TOOL TO REDUCE ANTHROPOGENIC IMPACTS ON AQUATIC ECOSYSTEMS. Oecologia Australis, 26(2), 169-186. https://doi.org/10.4257/oeco.2022.2602.07

Calegari, R. P., da Silva, E. A., da Silva, A. P. M., Gomes, M. P., Mota, L. A., Arthur, V. & Baptista, A. S. (2023). Wort disinfection treatment with electron beam for bioethanol production. Scientia Agricola, 80, Article e20210260. https://doi.org/10.1590/1678-992X-2021-0260

Johnsen, N. K., Marcher, D. M. W., Nielsen, M. B., Zhang, Y., Guo, Z. & Eser, B. E. (2025). A Thermostable Fatty Acid Hydratase from Marinitoga Piezophila with Low Temperature Optimum and Broad Product Scope. ChemBioChem, 26(17), Article e202500081. https://doi.org/10.1002/cbic.202500081

Mekureyaw, M. F., Junker, A., Bai, L., Petersen, A. E., Wei, Z. & Guo, Z. (2025). Biodegradation of perfluorooctanoic acid (PFOA) by laccase from Agaricus bisporus via oxidative decarboxylation. Journal of Hazardous Materials Advances, 19, 1-11. Article 100837. https://doi.org/10.1016/j.hazadv.2025.100837

Huang, Z., Piao, Y., Abuduwupuer, X., Ding, S., Chen, T., Jiang, S., Ding, Y., Guo, Z. & Gao, R. (2025). Design of a recombinant Pseudomonas strain with enhanced degradation viability towards catecholic compounds by reconstituting EDO-hydrolysis pathway. Journal of Environmental Chemical Engineering, 13(5), 1-12. Article 118338. https://doi.org/10.1016/j.jece.2025.118338

Benmebarek, I. E., González-Serrano, D. J., Bechtner, J. D., Galindo, J. M., Martínez, M. M., Sánchez-Verdú, M. P., Khalid, W. & Moreno, A. (2025). Microwave-assisted subcritical water extraction of low methoxyl pectin from pistachio industry waste: Optimization, characterization, emulsification, and gelation mechanism. Carbohydrate Polymers, 368, Article 124107. https://doi.org/10.1016/j.carbpol.2025.124107

Bechtner, J. D., Lopez-Rodulfo, I. M., Gallego-Lobillo, P., Hosek, J., Schwab, C. & Martinez, M. M. (2025). Polyphenols non-covalently bound to artificial plant cell walls are readily accessible to fecal microbiota and transiently alter fermentation activity. Food Chemistry, 493(part 2), Article 145817. https://doi.org/10.1016/j.foodchem.2025.145817

Ng, K. S. (2025). Old natural compounds that are underexploited: Antimicrobial mode of action of short-chain carboxylic acids and their potential as biopreservatives. [PhD thesis, Aarhus University].

Sommer, S. G., Christensen, M. L., Norddahl, B., Ambye-Jensen, M. & Roda-Serrat, M. C. (Eds.) (2025). Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era. Cambridge University Press.

Ma, Y. (2024). Design of Enzymatic Oxyfunctionalizations Catalyzed by Fusion Enzymes in Non-aqueous Media. [PhD thesis, Aarhus University].

Rohbohm, N. & Angenent, L. T. (2025). A development study for liquid- and vapor-fed anode zero-gap bioelectrolysis cells. iScience, 28(7), Article 112959. https://doi.org/10.1016/j.isci.2025.112959

Klein, V. J., Troøyen, S. H., Brito, L. F., Courtade, G., Brautaset, T. & Irla, M. K. (2024). Identification and characterization of a novel formaldehyde dehydrogenase in Bacillus subtilis. Applied and Environmental Microbiology, 90(11). https://doi.org/10.1128/aem.02181-23

Zhang, Y., Zhao, M., Tan, C., Zhang, Z., Ouyang, Y., Yang, L., Sun, Q., Wang, W., Wang, Z. & Dong, M. (2025). Emerging NH₃ MEMS-Sensing Techniques and Application. Advanced Materials Technologies, 10(19), Article e00474. https://doi.org/10.1002/admt.202500474

Irla, M., Nærdal, I., Virant, D., Brautaset, T., Busche, T., Goranovič, D., Haupka, C., Heux, S., Kosec, G., Rückert-Reed, C., Wendisch, V. F., Brito, L. F. & Vicente, C. M. (2025). Systems-level analysis provides insights on methanol-based production of L-glutamate and its decarboxylation product γ-aminobutyric acid by Bacillus methanolicus. Metabolic Engineering, 91, 389-404. https://doi.org/10.1016/j.ymben.2025.06.002

Stødkilde, L., Jensen, M. S., Jørgensen, E. T., Ambye-Jensen, M. & Eskildsen, M. (2025). Grass-based feeding strategies for organic growing-finishing pigs during temperate summer conditions. Livestock Science, 298, Article 105748. https://doi.org/10.1016/j.livsci.2025.105748

Alamia, A., Ambrose, H. W. & Rattigan, E. (2025). Techno-Economic Integration of Power-to-X Methanation in Biogas Systems: System-Level Optimization Based on Experimental Research. Poster session presented at 33rd European Biomass Conference & Exhibition , Valencia, Spain.

Ambrose, H. W., Engelbrecht, N., Alamia, A. & Kofoed, M. V. W. (2025). Biomethanation With Renewable Energy: Harnessing the Carbon-Water-Energy Nexus. Abstract from 33rd European Biomass Conference & Exhibition , Valencia, Spain.

Plesner, T. J., Wang, F., Ouyang, Y., Khazaee, Z., Zhou, P., Zhang, M., Eser, B. E., Zhang, Y. & Guo, Z. (2025). Cooperative action from Cu-centered MOF and a laccase for enhanced decolorization of synthetic dyes. Biochemical Engineering Journal, 221, 1-10. Article 109807. https://doi.org/10.1016/j.bej.2025.109807

Mathiasen, S. S., Guo, Z., Fritzen, A. M., Kiens, B., Kleinert, M. & Wiking, L. (2025). Physical properties and stability of milk fat retentate fraction from short-path distillation. International Dairy Journal, 169, Article 106310. https://doi.org/10.1016/j.idairyj.2025.106310

Sieborg, M. U. (2023). Giving CO2 a second chance. [PhD thesis, Aarhus University]. Aarhus University - Department of Biological and Chemical Engineering.

Tørring, T. (2011). Controlling Function and Structure with DNA.

Larsen, C. K. (2023). Mining the Unexplored Microbiome to Produce High-value Biopharmaceuticals. [PhD thesis, Aarhus University]. Aarhus Universitet.

Paz, L.-C. (2016). Beneficial Bacterial Symbionts of Earthworms: Insights into Symbiont Transmission and Metabolic Impact on their Host.

Ambye-Jensen, M. (2014). Ensiling as pretreatment of grass for lignocellulosic biomass conversion.

Kofoed, M. (2010). Diversity and Regulation of Nitrate-Reducing and Denitrifying Bacteria in Aquatic Systems. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Sørensen, M. F., Andrade, T. A., dos Passos, N. H. M. & Ambye-Jensen, M. (2025). Influence of substrate concentration on single-cell protein production from green biorefinery residual juice. Bioresource Technology Reports, 30, Article 102151. https://doi.org/10.1016/j.biteb.2025.102151

Wijesooriya, M. M., Vithanage, M. & Wijesekara, H. (2025). Underestimated Threats: Personal Care Products (PCPs) in Marine and Coastal Environments. In M. Vithanage, S. M. Samarasekara, B. D. James & C. M. Reddy (Eds.), Coastal and Marine Pollution: Source to Sink, Mitigation and Management (pp. 225-248). Wiley. https://doi.org/10.1002/9781394237029.ch12

Sieborg, M. U. & Kofoed, M. V. W. (2025). Gamle processer, nye muligheder: Nyt kemisk-biologisk koncept til CO2-fangst og omdannelse. Dansk Kemi, 106(2), 12-14. Article 106. https://ipaper.ipapercms.dk/TechMedia/DanskKemi/2025/2/?page=12

Ouyang, Y., Zhang, C., Wang, J., Guo, Z., Wang, Z. & Dong, M. (2025). Gate-Tunable Dual-Mode Optoelectronic Device for Self-Powered Photodetector and Optoelectronic Synapse. Advanced Science, 12(17), Article 2416259. https://doi.org/10.1002/advs.202416259

Tvilum, M., Lutz, C. M., Knap, M. M., Hoffmann, L., Khalil, A. A., Holt, M. I., Kandi, M., Schmidt, H. H., Appelt, A. L., Alber, M. & Møller, D. S. (2023). Different benefits of adaptive radiotherapy for different histologies of NSCLC. Acta Oncologica, 62(11), 1426-1432. https://doi.org/10.1080/0284186X.2023.2260944

Lærke, H. N., Jensen, S. K., Andrade, T. A., Ambye-Jensen, M., Jørgensen, E. T. & Stødkilde, L. (2025). Towards efficient grass-clover biorefining: Influence of harvesting methods and delayed processing. Animal Feed Science and Technology, 324, Article 116336. https://doi.org/10.1016/j.anifeedsci.2025.116336

Huertas-Díaz, L., Vestergaard, L. G., Marietou, A., Irla, M., Behr, J., Somoza, M. M., Feilberg, A. & Schwab, C. (2025). Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens. Gut Pathogens, 17(1), Article 23. https://doi.org/10.1186/s13099-025-00689-1

Ma, Y., Bittner, J. P., Vernet, G., Zhang, N. & Kara, S. (2025). Linkers in Action: Exploring Fusion Enzymes for Oxyfunctionlizations in Non-Conventional Media Through Experiments and Simulations. ChemCatChem, 17(9), Article e202401893. https://doi.org/10.1002/cctc.202401893

Milić, M., Vernet, G., Le, H. Y., Zhang, N., Byström, E., Domínguez de María, P. & Kara, S. (2025). Assessing the Industrial Edge of the Lipase-Mediated Oxidation of 2,5-Diformylfuran to 2,5-Furandicarboxylic Acid: Rotating Bed Reactors, an “Acyl-Donor-Free” Oxidation Concept, and Environmental Aspects. Organic Process Research and Development, 29(4), 1058-1066. https://doi.org/10.1021/acs.oprd.4c00474

Zhang, N., Lahmann, V., Bittner, J. P., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2025). Redox Biocatalysis in Lidocaine-Based Hydrophobic Deep Eutectic Solvents: Non-Conventional Media Outperform Aqueous Conditions. ChemSusChem, 18(6), Article e202402075. https://doi.org/10.1002/cssc.202402075

Xie, J., Veigel, M., Schmidt, H. & Gänzle, M. (2025). Selection of Bacillus spp. as fermentation cultures for production of plant-based cheese analogues. International Journal of Food Microbiology, 435, Article 111178. https://doi.org/10.1016/j.ijfoodmicro.2025.111178

Lülf, R. H., Vogel, R. F. & Ehrmann, M. A. (2021). Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations. International Journal of Food Microbiology, 354, Article 109316. https://doi.org/10.1016/j.ijfoodmicro.2021.109316

Link, T., Lülf, R. H., Parr, M., Hilgarth, M. & Ehrmann, M. A. (2022). Genome Sequence of the Diploid Yeast Debaryomyces hansenii TMW 3.1188. Microbiology Resource Announcements, 11(11). https://doi.org/10.1128/mra.00649-22

Lülf, R. H., Hilgarth, M. & Ehrmann, M. A. (2022). Chromohalobacter moromii sp. nov., a moderately halophilic bacterium isolated from lupine-based moromi fermentation. Systematic and Applied Microbiology, 45(4), Article 126324. https://doi.org/10.1016/j.syapm.2022.126324

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Revised 16.01.2025

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