Publications by Molecular and Cellular Biotechnology

Are you looking for publications by Molecular and Cellular Biotechnology? On this page you can find all the publications made by the Molecular and Cellular Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Struwe, H., Grimm, C., Dräger, G., Beutel, S., Alcalde, M., Kirschning, A. & Kara, S. (2025). Expanding the “Terpenome”: Applications of Unspecific Peroxygenases (UPOs) in Oxidations of Unnatural Terpenoids. ChemCatChem, 17(1), Artikel e202401414. https://doi.org/10.1002/cctc.202401414

Merrild, A., Svenningsen, T., Chevrette, M. & Tørring, T. (2025). Evolution-Guided Discovery of Antimycobacterial Triculamin-Like Lasso Peptides. Angewandte Chemie International Edition, 64(20), Artikel e202425134. https://doi.org/10.1002/anie.202425134

Bittner, J. P., Zhang, N., Domínguez de María, P., Smirnova, I., Kara, S. & Jakobtorweihen, S. (2025). Molecular Understanding of Activity Changes of Alcohol Dehydrogenase in Deep Eutectic Solvents. Journal of Physical Chemistry B, 129(4), 1197-1213. https://doi.org/10.1021/acs.jpcb.4c06523

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: A new reaction of diiron enzymes (Angewandte Chemie - International Edition (2011) 50 DOI: 10.1002/anie.201101552). Angewandte Chemie - International Edition, 51(32). https://doi.org/10.1002/anie.201204831

Kim, H., Mi, H. T. N., Ahn, J. H., Lee, J. S., Eser, B. E., Choi, J. & Han, J. (2024). Glycoside-metabolizing oxidoreductase D3dgpA from human gut bacterium. Frontiers in Bioengineering and Biotechnology, 12, Artikel 1413854. https://doi.org/10.3389/fbioe.2024.1413854

Mi, H. T. N., Chaiyasarn, S., Eser, B. E., Tan, S. R. S., Burapan, S. & Han, J. (2022). Allyl Aryl Ether Cleavage by Blautia sp. MRG-PMF1 Cocorrinoid O-Demethylase. Microbiology Spectrum, 10(5). https://doi.org/10.1128/spectrum.03305-22

Eser, B. E., Das, D., Han, J., Jones, P. R. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: Investigation of kinetics and requirement for an external electron donor (Biochemistry (2011) 50:49 (10743-10750). DOI: 10.1021/bi2012417). Biochemistry, 51(28), 5703. https://doi.org/10.1021/bi300837j

Li, Z., Zhang, Y., Balle, T., Eser, B. E., Fang, Y. & Guo, Z. (2025). Preparation of Cello-Oligosaccharides by Precise-Controlled Enzymatic Depolymerization and Its Amphiphilic Functionalization for High-Oil Load Emulsification. Journal of Agricultural and Food Chemistry, 73(2), 1458–1467. https://doi.org/10.1021/acs.jafc.4c08886

Li, Q., Marietou, A., Andersen, F. F., Hosek, J., Scavenius, C., Zhang, J. & Schwab, C. (2025). In vitro investigations on the impact of fermented dairy constituents on fecal microbiota composition and fermentation activity. Microbiology Spectrum, 13(3), e0219324. https://doi.org/10.1128/spectrum.02193-24

Lopez-Rodulfo, I. M., Stentoft, E. W. & Martinez, M. M. (2025). Comparative assessment of polyphenol bioaccessibility in cold-pressed apple fractions using static and semi-dynamic digestion models. Food Research International, 202, Artikel 115743. https://doi.org/10.1016/j.foodres.2025.115743

Nazipi Bushi, S., Lund, M. B., Sandfeld, T., Nørskov, S. S., Fruergaard, S., Glasius, M., Bilde, T. & Schramm, A. (2025). A modified iChip for in situ cultivation of bacteria in arid environments. Applied and Environmental Microbiology, 91(2), e0132524. Artikel e0132524. https://doi.org/10.1128/aem.01325-24

Elvan Gezer, M., Gravlund Fønss, K., Bambace, M. F., Marietou, A., Sandberg Overby, S., Sundekilde, U. & Schwab, C. (2025). Investigation on L-rhamnose metabolism of Loigolactobacillus coryniformis subsp. coryniformis DSM 20001 and its propionate-containing fermentates. Applied and Environmental Microbiology, 91(1), e0161324. Artikel e0161324. https://doi.org/10.1128/aem.01613-24

Muñoz-Duarte, L., Chakraborty, S., Grøn, L. V., Bambace, M. F., Catalano, J. & Philips, J. (2025). H₂ Consumption by Various Acetogenic Bacteria Follows First-Order Kinetics up to H₂ Saturation. Biotechnology and Bioengineering, 122(4), 804-816. https://doi.org/10.1002/bit.28904

Palacios Jaramillo, P. A., Sieborg, M. U., Kuipers, S. B., Fruergaard, S. & Kofoed, M. V. W. (2025). Temperature tactics: Targeting acetate or methane production in autotrophic H2/CO2 conversion with mixed cultures. Biochemical Engineering Journal, 214, Artikel 109574. https://doi.org/10.1016/j.bej.2024.109574

Lustermans, J. J. M., Sereika, M., Burdorf, L. D. W., Albertsen, M., Schramm, A. & Marshall, I. P. G. (2025). Extracellular electron transfer genes expressed by candidate flocking bacteria in cable bacteria sediment. mSystems, 10(1). https://doi.org/10.1128/msystems.01259-24

Schmitz, L. M., Kreitli, N., Obermaier, L., Weber, N., Rychlik, M. & Angenent, L. T. (2024). Power-to-vitamins: producing folate (vitamin B₉) from renewable electric power and CO₂ with a microbial protein system. Trends in Biotechnology, 42(12), 1691-1714. https://doi.org/10.1016/j.tibtech.2024.06.014

Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D'Agostino, P. M., de Rond, T., Del Pup, E., Duncan, K. R., Gu, W. ... Medema, M. H. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53(D1), D678-D690. https://doi.org/10.1093/nar/gkae1115

Mekureyaw, M. F., Junker, A., Bai, L., Zhang, Y., Wei, Z. & Guo, Z. (2025). Laccase based per- and polyfluoroalkyl substances degradation: Status and future perspectives. Water Research, 271, Artikel 122888. https://doi.org/10.1016/j.watres.2024.122888

Benfeldt, F. V., Wang, F., Bredahl, N., Gao, R., Guo, Z. & Eser, B. E. (2024). A Highly Efficient Ferulic Acid Decarboxylase from Capronia coronata: Characterization and Biocatalytic Applications. (s. xxx-xxx). ChemRxiv https://doi.org/10.26434/chemrxiv-2024-0npph-v2

Ouyang, Y., Jiang, Z., Ulstrup, S., Guo, Z., Wang, Z. & Dong, MD. (2024). Enhancing MoS2 Electronic Performance with Solid-State Lithium-Ion Electrolyte Contacts through Dielectric Screening. ACS Nano, 18(49), 33310-33318. https://doi.org/10.1021/acsnano.4c05973

Andrade, T. A., López Fetzer, D. E., Hachow Motta dos Passos, N. & Ambye-Jensen, M. (2025). Maceration and fractionation technologies in a demonstration-scale green biorefinery: Proteins, sugars, and lipids extraction and energy efficiency. Industrial Crops and Products, 223, Artikel 120142. https://doi.org/10.1016/j.indcrop.2024.120142

Gallego-Lobillo, P., Lopez-Rodulfo, I. M. & Martinez, M. M. (2025). Rat small intestine extract as a source of mammalian α- and β-glycosidases to study polyphenol bioaccessibility and deglycosylation in vitro: A case study with matrix-devoid and matrix-defined apple fractions. Food Research International, 199, Artikel 115346. https://doi.org/10.1016/j.foodres.2024.115346

Gkantzou, E., Koulopoulou, T., Brass, H., Schönauer, D., Glieder, A. & Kara, S. (2024). Unspecific peroxygenase immobilization in 3D-printed microfluidics: towards tailor-made screening platforms. Catalysis Science and Technology, 14(22), 6496-6502. https://doi.org/10.1039/d4cy00869c

Kundu, D., Samanta, P., Bhowmick, S., Panigrahi, S., Dey, S., Nath, K., Rajak, R. C., Sherpa, K. C., Barathi, A., Kofoed, M. V. W., Kumar, S. & Ki Lin, C. S. (2024). Heterogeneous catalysts for sustainable biofuel production: A paradigm shift towards renewable energy. Biocatalysis and Agricultural Biotechnology, 62, Artikel 103432. https://doi.org/10.1016/j.bcab.2024.103432

Ng, K. S., Bambace, M. F., Andersen, E. B., Meyer, R. L. & Schwab, C. (2024). Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica. Microbiology Spectrum, 12(11), Artikel e0165824. https://doi.org/10.1128/spectrum.01658-24

Rohbohm, N., Lang, M., Erben, J., Gemeinhardt, K., Patel, N., Ilic, I. K., Hafenbradl, D., Rodrigo Quejigo, J. & Angenent, L. T. (2024). Performance Effects of Different Shutdown Methods on Three Electrode Materials for Electromethanogenesis. ChemElectroChem, 11(21), Artikel e202400372. https://doi.org/10.1002/celc.202400372

Chanquia, S. N., Bittner, J. P., Santner, P., Szabó, L. K., Madsen, J. S., Øhlenschlæger, M. L., Sarvari, A. G., Merrild, A. H., Fo̷nss, K. G., Jaron, D., Lutz, L., Kara, S. & Eser, B. E. (2024). Active-Site Mutagenesis of Fatty Acid Photodecarboxylase: Experimental and Computational Insight into Substrate Chain-Length Specificity. ACS Catalysis, 14(21), 15837-15849. https://doi.org/10.1021/acscatal.4c02970

Nissen, S. H., Juul, L., Stødkilde, L., Bruhn, A., Ambye-Jensen, M. & Dalsgaard, T. K. (2024). Pilot-scale protein extraction of green seaweed (Ulva spp.) whole biomass and pulp – Investigating biochemical composition and protein digestibility in a rat trial. Food and Bioproducts Processing, 148, 353-364. https://doi.org/10.1016/j.fbp.2024.10.003

Ravenni, G., Thomsen, T. P., Smith, A. M., Ambye-Jensen, M., Rohde-Nielsen, K. T. & Henriksen, U. B. (2024). Integration of a drying and pyrolysis system in a green biorefinery: biochar product quality and impacts on the overall energy balance and climate footprint. Biomass Conversion and Biorefinery, 14(20), 25143-25159. https://doi.org/10.1007/s13399-023-04877-4

Svenningsen, T. (2024). Bridging the Gap: Understanding Triculamin Biosynthesis through In vitro Reconstitution and Genetic Analysis. Poster-session præsenteret på Microbial Secondary Metabolites
in Microbiomes , Helsingør, Danmark.

Svenningsen, T. (2024). Uncovering the biosynthesis of the non-canonical lasso peptide Triculamin through in vitro reconstitution. Poster-session præsenteret på 4th Synthetic Biology of Natural Products Conference, Cancun, Mexico.

Lambrecht, S., Gazizova, A., Kara, S., Meyer, J. & Jopp, S. (2024). Antimicrobial properties and biocompatibility of semi-synthetic carbohydrate-based ionic hydrogels. RSC Advances, 14(42), 30719-30731. https://doi.org/10.1039/d4ra05695g

Hougaard, R. F., Andersen, F. D. & Tørring, T. (2024). Scaffolding scientific inquiry: Adapting Tiny Earth for engaging high school students and their teachers in authentic research. Abstract fra The Nordic conference on Science Education Research, NFSUN 2024, Reykjavik, Island.

Schwab, C. & Bambace, M. F. (2024). Traditional and novel applications of sourdough microbes in Northern Europe and the Baltic countries. I Sourdough Microbiota and Starter Cultures for Industry (s. 93-129). Springer International Publishing. https://doi.org/10.1007/978-3-031-48604-3_4

Huang, Z., Qin, D., Abuduwupuer, X., Cao, L., Piao, Y., Shao, Z., Jiang, L., Guo, Z. & Gao, R. (2024). Regulate catalytic performance by engineering non-regular structure of extradiol dioxygenase: An entrance to bottom strategy. International Journal of Biological Macromolecules, 281(Part 1), 1-13. Artikel 136246. https://doi.org/10.1016/j.ijbiomac.2024.136246

Li, Q., Ruscheweyh, H. J., Østergaard, L. H., Libertella, M., Simonsen, K. S., Sunagawa, S., Scoma, A. & Schwab, C. (2024). Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. Microbiome, 12, Artikel 178. https://doi.org/10.1186/s40168-024-01863-4

Dalby, F. R., Hafner, S. D., Ambrose, H. W. & Adamsen, A. P. S. (2024). Modelling and measuring aerobic and anaerobic carbon loss from pig slurry storage. Abstract fra EGU, Vienna, Østrig. https://doi.org/10.5194/egusphere-egu24-22103

Kirstine Hessellund Nielsen, A., Ditlev Mørck Ottosen, L. & Vedel Wegener Kofoed, M. (2024). Development of membrane bioreactor for conversion of flue Gas-CO₂ to C1 and C2 biomolecules. Chemical Engineering Journal, 499, Artikel 155780. https://doi.org/10.1016/j.cej.2024.155780

Ambrose, H. W., Bambace, M. F., Marietou, A., Schwab, C., Kofoed, M. V. W. & Feilberg, A. (2024). Reuterin based biological treatment to mitigate methane emissions from pig slurry storage. Abstract fra International symposium on gas and dust emissions from livestock (2024), Valencia, Spanien.

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2024). Chemical and biological surfactant treatments to mitigate methane emissions from manure pits in pig barns. Abstract fra International symposium on gas and dust emissions from livestock (2024), Valencia, Spanien.

Merrild, A. H., Johnsen, N. K., Zhang, M., Bogojevic, O., Ouyang, Y. & Guo, Z. (2024). De Novo Synthesis of Perdeuterated Phosphoinositide by Installing a Non-native Phospholipid Biopathway in E. coli. ACS Synthetic Biology, 13(10), 3344-3353. Artikel 39292964. https://doi.org/10.1021/acssynbio.4c00413

de la Cruz, M., Kunert, F., Taymaz-Nikerel, H., Sigala, J.-C., Gosset, G., Büchs, J. & Lara, A. R. (2024). Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered E. coli. Microorganisms, 12(1), Artikel 150. https://doi.org/10.3390/microorganisms12010150

Sieborg, M. U., Nielsen, A. K. H., Ottosen, L. D. M., Daasbjerg, K. & Kofoed, M. V. W. (2024). Bio-integrated carbon capture and utilization: at the interface between capture chemistry and archaeal CO₂ reduction. Nature Communications, 15(1), Artikel 7492. https://doi.org/10.1038/s41467-024-51700-3

Dalby, F. R., Hafner, S. D., Ambrose, H. W. & Adamsen, A. P. S. (2024). Pig manure degradation and carbon emission: Measuring and modeling combined aerobic–anaerobic transformations. Journal of Environmental Quality, 53(5), 589-603. https://doi.org/10.1002/jeq2.20603

Spirito, C. M., Lucas, T. N., Patz, S., Jeon, B. S., Werner, J. J., Trondsen, L. H., Guzman, J. J., Huson, D. H. & Angenent, L. T. (2024). Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. mSystems, 9(8). https://doi.org/10.1128/msystems.00416-24

Lambrecht, S., Biermann, M., Kara, S., Jopp, S. & Meyer, J. (2024). A novel characterization technique for hydrogels - in situ rheology-Raman spectroscopy for gelation and polymerization tracking. Materials Advances, 5(17), 6957-6966. https://doi.org/10.1039/d4ma00543k

Petermeier, P., Domínguez de María, P., Byström, E. & Kara, S. (2024). Intensified, Kilogram-Scaled, and Environment-Friendly: Chemoenzymatic Synthesis of Bio-Based Acylated Hydroxystyrenes. ACS Sustainable Chemistry and Engineering, 12(34), 12869-12878. https://doi.org/10.1021/acssuschemeng.4c03648

Anand, M., Panigrahi, S., Kofoed, M. V. W., Aghababaei, R. & Agarwala, S. (2024). Bioinspired poly(vinyl alcohol) films with tunable adhesion and self-healing for biodegradable electronics and beyond. Sustainable Materials and Technologies, 41, Artikel e01084. https://doi.org/10.1016/j.susmat.2024.e01084

Gaffey, J., Matinez, A. A., Andrade, T. A., Ambye-Jensen, M., Bishop, G., Collins, M. N. & Styles, D. (2024). Assessing the environmental footprint of alternative green biorefinery protein extraction techniques from grasses and legumes. Science of the Total Environment, 949, Artikel 175035. https://doi.org/10.1016/j.scitotenv.2024.175035

Vernet, G., Ma, Y., Serban, S., Basso, A., Zhang, N. & Kara, S. (2024). Metal Affinity Fusion Enzyme Immobilization: Batch Process Showcase for Cascading Alcohol Oxidation and Bayer-Villiger Oxidation in Microaqueous Media. ACS Sustainable Chemistry and Engineering, 12(29), 10820-10830. https://doi.org/10.1021/acssuschemeng.4c02236

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AU Engineering