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Institut for Bio- og Kemiteknologi

Publications by Medical Biotechnology

Are you looking for publications by Section of Medical Biotechnology? On this page you can find all the publications made by the Section of Medical Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Pourjafar, M., Saidijam, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2023). Surfaceome Profiling Suggests Potential of Anti-MUC1×EGFR Bispecific Antibody for Breast Cancer Targeted Therapy. Journal of Immunotherapy, 46(7), 245-261. https://doi.org/10.1097/CJI.0000000000000482

Plum, M., Tjerrild, L., Raiber, T., Bantleon, F., Bantleon, S., Miehe, M., Jabs, F., Seismann, H., Möbs, C., Pfützner, W., Jakob, T., Andersen, G. R. & Spillner, E. (2023). Structural and functional analyses of antibodies specific for modified core N-glycans suggest a role in T_H2 responses. Allergy, 78(1), 121-130. https://doi.org/10.1111/all.15417

Pijanka, J. K., Spang, M. T., Sorensen, T., Liu, J., Nguyen, T. D., Quigley, H. A. & Boote, C. (2015). Depth-dependent changes in collagen organization in the human peripapillary sclera. PLOS ONE, 10(2), e0118648. https://doi.org/10.1371/journal.pone.0118648

Pijanka, J. K., Kimball, E. C., Pease, M. E., Abass, A., Sorensen, T., Nguyen, T. D., Quigley, H. A. & Boote, C. (2014). Changes in scleral collagen organization in murine chronic experimental glaucoma. Investigative Ophthalmology & Visual Science, 55(10), 6554-64. https://doi.org/10.1167/iovs.14-15047

Pijanka, J. K., Coudrillier, B., Ziegler, K., Sorensen, T., Meek, K. M., Nguyen, T. D., Quigley, H. A. & Boote, C. (2012). Quantitative mapping of collagen fiber orientation in non-glaucoma and glaucoma posterior human sclerae. Investigative Ophthalmology & Visual Science, 53(9), 5258-70. https://doi.org/10.1167/iovs.12-9705

Picard, M., Jensen, A.-M. L., Sørensen, T. L.-M., Champeil, P., Møller, J. V. & Nissen, P. (2007). Ca(2+) versus Mg(2+) Coordination at the Nucleotide-binding site of the Sarcoplasmic Reticulum Ca(2+)-ATPase. Journal of Molecular Biology, 368(1), 1-7.

Philips, J., Rabaey, K., R. Lovley, D. & Vargas, M. (2017). Biofilm formation by Clostridium ljungdahlii is induced by sodium chloride stress: Experimental evaluation and transcriptome analysis. PLOS ONE, 12(1), Artikel e0170406. https://doi.org/10.1371/journal.pone.0170406

Philips, J., Verbeeck, K., Rabaey, K. & Arends, J. B. A. (2016). Electron transfer mechanisms in biofilms. I Microbial Electrochemical and Fuel Cells (s. 67-113). Elsevier. https://doi.org/10.1016/C2014-0-01767-4

Philips, J., Miroshnikov, A., Haest, P. J., Springael, D. & Smolders, E. (2014). Motile Geobacter dechlorinators migrate into a model source zone of trichloroethene dense non-aqueous phase liquid: Experimental evaluation and modeling. Journal of Contaminant Hydrology, 170, 28-38. https://doi.org/10.1016/j.jconhyd.2014.09.010

Philips, J., Maes, N., Springael, D. & Smolders, E. (2013). Acidification due to microbial dechlorination near a TCE DNAPL is overcome with pH buffer or formate as electron donor: experimental demonstration in diffusion-cells. Journal of Contaminant Hydrology, 147, 25-33. https://doi.org/10.1016/j.jconhyd.2013.02.002

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Inhibition of Geobacter Dechlorinators at Elevated Trichloroethene Concentrations Is Explained by a Reduced Activity Rather than by an Enhanced Cell Decay. Environmental Science and Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Philips, J., Van Muylder, R., Springael, D. & Smolders, E. (2013). Electron donor limitations reduce microbial enhanced trichloroethene DNAPL dissolution: a flux-based analysis using three-layer diffusion-cells. Chemosphere, 91(1), 7-13. https://doi.org/10.1016/j.chemosphere.2012.11.016

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Distribution of a dechlorinating community in relation to the distance from a trichloroethene dense non-aqueous phase liquid in a model aquifer. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Philips, J., Springael, D. & Smolders, E. (2011). A three-layer diffusion-cell to examine bioenhanced dissolution of chloroethene dense non-aqueous phase liquid. Chemosphere, 83(7), 991-996. https://doi.org/10.1016/j.chemosphere.2011.02.012

Philips, J., Van den Driessche, N., Prevotaeu, A., Gralnick, J. A., Arends, J. BA. & Rabaey, K. (2018). A new Shewanella isolate enhances corrosion by using metallic iron as electron donor with fumarate as electron acceptor. Applied and Environmental Microbiology, 84(20), Artikel e01154-18. https://doi.org/10.1128/AEM.01154-18

Philips, J., Monballyu, E., Georg, S., De Paepe, K., Prévoteau, A., Rabaey, K. & Arends, J. B. A. (2019). An Acetobacterium strain isolated with metallic iron as electron donor enhances iron corrosion by a similar mechanism as Sporomusa sphaeroides. F E M S Microbiology Ecology, 95(2), Artikel fiy222. https://doi.org/10.1093/femsec/fiy222

Philips, J. (2020). Extracellular electron uptake by acetogenic bacteria: Does H2 consumption favor the H2 evolution reaction on a cathode or metallic iron? Frontiers in Microbiology, 10, Artikel 2997. https://doi.org/10.3389/fmicb.2019.02997

Philips, J., Procopio, L. & Marshall, I. P. G. (2023). Insights into the various mechanisms by which Shewanella spp. induce and inhibit steel corrosion. npj Materials Degradation, 7(1), Artikel 95. https://doi.org/10.1038/s41529-023-00416-8

Perez Riverol, A., Romani Fernandes, L. G., Musacchio Lasa, A., Aparecido dos Santos-Pinto, J. R., Moitinho Abram, D., Izuka Moraes, G. H., Jabs, F., Miehe, M., Seismann, H., Sergio Palma, M., de Lima Zollner, R., Spillner, E. & Brochetto-Braga, M. R. (2018). Phospholipase A1-based cross-reactivity among venoms of clinically relevant Hymenoptera from Neotropical and temperate regions. Molecular Immunology, 93, 87-93. https://doi.org/10.1016/j.molimm.2017.11.007

Pedersen, M. B., Zhou, X., Larsen, E. K. U., Sørensen, U. S., Kjems, J., Nygaard, J. V., Nyengaard, J. R., Meyer, R. L., Boesen, T. & Vorup-Jensen, T. (2010). Curvature of Synthetic and Natural Surfaces is an Important Target Feature in Classical Pathway Complement Activation. Journal of Immunology, 184(4), 1931-1945. https://doi.org/10.4049/jimmunol.0902214

Pedersen, C. T., Loke, I., Lorentzen, A., Wolf, S., Kamble, M., Kristensen, S. K., Munch, D., Radutoiu, S., Spillner, E., Roepstorff, P., Thaysen-Andersen, M., Stougaard, J. & Dam, S. (2017). N-glycan maturation mutants in Lotus japonicus for basic and applied glycoprotein research. Plant Journal, 91(3), 394-407. https://doi.org/10.1111/tpj.13570

Paul, L., Herrmann, S., Koch, C. B., Philips, J. & Smolders, E. (2013). Inhibition of microbial trichloroethylene dechorination by Fe (III) reduction depends on Fe mineralogy: A batch study using the bioaugmentation culture KB-1. Water Research, 47(7), 2543-2554. https://doi.org/10.1016/j.watres.2013.02.029

Palacios, P. A., Kleikamp, H., Nielsen, J. L., Jensen, M. B., Bentien, A. & Kofoed, M. V. W. (2023). Quinone-mediated extracellular electron transfer processes in ex situ biomethanation reactors. Bioresource Technology Reports, 24, Artikel 101671. https://doi.org/10.1016/j.biteb.2023.101671

Palacios, P. A., Philips, J., Bentien, A. & Kofoed, M. V. W. (2024). Relevance of extracellular electron uptake mechanisms for electromethanogenesis applications. Biotechnology Advances, 73, 108369. Artikel 108369. https://doi.org/10.1016/j.biotechadv.2024.108369

Ottosen, L. D. M., Feilberg, A., Kofoed, M. V. W. & Guldberg, L. B. (2019). Stimulering af biologisk omsætning. (Patentnummer DK2017PA70868).

Oliveira, J. M. S., Ottosen, L. D. M. & Kofoed, M. V. W. (2024). Continuous biomethanation of flue gas-carbon dioxide using bio-integrated carbon capture and utilization. Bioresource Technology, 399, Artikel 130506. https://doi.org/10.1016/j.biortech.2024.130506

Olesen, C., Sørensen, T. L.-M., Nielsen, R. C., Møller, J. V. & Nissen, P. (2004). Dephosphorylation of the Calcium Pump Coupled to Counterion Occlusion. Science, 306, 2251-2255.

Olesen, L. Ø., Bouzinova, E., Severino, M., Sivasaravanaparan, M., Hasselstrøm, J. B., Finsen, B. & Wiborg, O. (2016). Behavioural Phenotyping of APPswe/PS1δE9 Mice: Age-Rrelated Changes and Effect of Long-Term Paroxetine Treatment. PLOS ONE, 11(11), Artikel e0165144.

Olesen, L. O., Sivasaravanaparan, M., Severino, M., Babcock, A. A., Bouzinova, E. V., West, M. J., Wiborg, O. & Finsen, B. (2017). Neuron and neuroblast numbers and cytogenesis in the dentate gyrus of aged APP(swe)/PS1(dE9) transgenic mice: Effect of long-term treatment with paroxetine. Neurobiology of Disease, 104, 50-60. https://doi.org/10.1016/j.nbd.2017.04.021

Offermann, N., Plum, M., Hübner, U., Rathloff, K., Braren, I., Fooke, M. & Spillner, E. (2016). Human serum substitution by artificial sera of scalable allergen reactivity based on polyclonal antibodies and chimeras of human FcγRI and IgE domains. Allergy: European Journal of Allergy and Clinical Immunology, 71(12), 1794-1799. https://doi.org/10.1111/all.13038

Nygaard, J. V., Andersen, M. Ø., Howard, K. A., Foss, M., Bünger, C., Kjems, J. & Besenbacher, F. (2008). Investigation of particle-functionalized tissue engineering scaffolds using X-ray tomographic microscopy. Biotechnology and Bioengineering (Print), 100(4), 820-9. https://doi.org/10.1002/bit.21796

Nygaard, J. V., Samuel, S. A., Kim, W. Y. & Besenbacher, F. (2009). Method for calculating pressures in a fluid stream through a tube section, especially a blood vessel with atherosclerotic plaque. (Patentnummer PCT/Dk2008/050266).

Nygaard, J. V. & Rytter, J. (1999). A reinforced, flexible conduit and a method of manufacturing same.

Nygaard, J. V., Bjerre, L., Bünger, C. & Besenbacher, F. (2009). Structurally Graded Scaffolds.

Nygaard, J. V. & Lyckegaard, A. (2007). Sandwich Panel with a periodical and graded core manufactured using rapid prototyping. Journal of Sandwich Structures & Materials, 9(4), 365-376.

Nygaard, J. V. & Pyrz, R. (2003). Characterisation of Microcellular Foams using X-Ray Microtomography and Raman Spectroscopy. Cellular Polymers, 22(6), 347-369.

Nygaard, J. V. (2003). Mechanical characterisation of microcellular thermoplastic foams manufactured using gas diffusion technique. Aalborg Universitetsbibliotek.

Nygaard, J. V., Foss, M., Cloetens, P., Kassem, M. & Besenbacher, F. (2008). Nanomesh evolved in polycaprolactone shown by synchrotron holo-tomography. Poster session præsenteret på 8th World Biomaterials Congress, Amsterdam, Belgien.

Nygaard, J. V. & Pyz, R. (2005). Morphology of a Closed Cell Polyethylene Sandwich Core and its Tape Interphase: STVF rammeprogram I: Structurally Graded Polymeric Materials and Filled Polymers, Task C: Micromechanics and microstructure property correlations.

Nygaard, J. V. (2005). Femlab Analysis of Open Aluminium Foam in Compression. I Proceedings of the COMSOL Multiphysics User's Conference 2005

Nygaard, J. V., Andersen, M. Ø., Cloetens, P., Foss, M., Kassem, M., Kjems, J. & Besenbacher, F. (2008). Nanoscaffolds for Drug Delivery and Tissue Engineering. Poster session præsenteret på iNANO 6^th annual meeting, Aarhus, Danmark.

Nygaard, J. V., Samuel, S. A., Kim, W. Y. & Besenbacher, F. (2008). Computer Aided Biological Response Assessment, CABRA applied to Atherosclerosis. Poster session præsenteret på iNANO 6^th annual meeting, Aarhus, Danmark.

Nygaard, J. V., Andersen, M. Ø., Howard, K., Sasov, A., Kjems, J. & Besenbacher, F. (2004). Analysis of Nanoparticles in Scaffolds for Tissue Engineering by use of X-Ray Nano Tomography. Poster session præsenteret på iNANO 4^th annual meeting, Aarhus, Danmark.

Nygaard, J. V., Bregnant, L., Mygind, T., Bünger, C. & Besenbacher, F. (2006). Tortuosity Flow Parameter in Scaffolds from Synchrotron Tomography. Poster session præsenteret på Biology and Medicine with Low Energy Synchrotron Radiation, Institute for Storage Ring Facilities (ISA) at Aarhus University, Aarhus, Danmark.

Nygaard, J. V., Andersen, M. Ø., Cloetens, P., Foss, M., Kassem, M., Kjems, J. & Besenbacher, F. (2009). Polycaprolactone nanomesh cultured with hMSC evaluated by synchrotron tomography. Poster session præsenteret på Self-assembly: from nature to clinics, Porto, Portugal.

Nygaard, J. V. (2010). Mechano transduction in human stem cells cultured in porous scaffolds. Poster session præsenteret på ESB, Edinburgh.

Nygaard, J. V., Foss, M., Cloetens, P., Andersen, M. Ø., Kassem, M., Kjems, J. & Besenbacher, F. (2011). 3D deformation in nanoporous system for tissue phenotype emergence through stem cell specification. http://www.wksp-MBiomech.dem.ist.utl.pt

Nygaard, J. V., Uyar, T., Chen, M., Cloetens, P., Kingshott, P. & Besenbacher, F. (2011). Characterisation of internal morphologies in electrospun fibers by X-ray tomographic microscopy. Nanoscale, 3. https://doi.org/10.1039/c1nr10304k

Nygaard, J. V. (2012). CFD i fysiokemisk hydrodynamik - transport og reaktionsstrømning.

Nygaard, J. V. (2012). CFD - flow induced structural vibrations.

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Revideret 21.11.2022

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AU Engineering