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Department of Biological and Chemical Engineering

Publications by Molecular and Cellular Biotechnology

Are you looking for publications by Section of Molecular and Cellular Biotechnology? On this page you can find all the publications made by the Section of Molecular and Cellular Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Vernet, G., Hobisch, M. & Kara, S. (2022). Process intensification in oxidative biocatalysis. Current Opinion in Green and Sustainable Chemistry, 38, Article 100692. https://doi.org/10.1016/j.cogsc.2022.100692

Jurkas, V., Weissensteiner, F., De Santis, P., Vrabl, S., A. Sorgenfrei, F., Bierbaumer, S., Kara, S., Kourist, R., P. Wangikar, P., Winkler, C. K. & Kroutil, W. (2022). Transmembrane Shuttling of Photosynthetically Produced Electrons to Propel Extracellular Biocatalytic Redox Reactions in a Modular Fashion. Angewandte Chemie, 61(40), Article e202207971. https://doi.org/10.1002/anie.202207971

Hobisch, M., De Santis, P., Serban, S., Basso, A., Byström, E. & Kara, S. (2022). Peroxygenase-Driven Ethylbenzene Hydroxylation in a Rotating Bed Reactor. Organic Process Research & Development, 26(9), 2761-2765. https://doi.org/10.1021/acs.oprd.2c00211

De Santis, P., Petrovai, N., Meyer, L.-E., Hobisch, M. & Kara, S. (2022). A holistic carrier-bound immobilization approach for unspecific peroxygenase. Frontiers in Chemistry, 10, Article 985997. https://doi.org/10.3389/fchem.2022.985997

Petermeier, P., Bittner, J. P., Müller, S., Byström, E. & Kara, S. (2022). Design of a green chemoenzymatic cascade for scalable synthesis of bio-based styrene alternatives. Green Chemistry, 24(18), 6889-6899. https://doi.org/10.1039/d2gc01629j

Pourjafar, M., Miehe, M., Najafi, R., Soleimani, M. & Spillner, E. (2022). Construction, expression and functional characterization of an engineered antibody against tumor antigen MUC-1C. Protein Expression and Purification, 199, Article 106148. https://doi.org/10.1016/j.pep.2022.106148

Zhou, Y., Pedersen, J. N., Pedersen, J. N., Jones, N. C., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Gao, R. & Guo, Z. (2022). Superanionic Solvent-Free Liquid Enzymes Exhibit Enhanced Structures and Activities. Advanced Science, 9(32), Article 2202359. https://doi.org/10.1002/advs.202202359

Barbato, M., Vacchini, V., Engelen, A. H., Patania, G., Mapelli, F., Borin, S. & Crotti, E. (2022). What lies on macroalgal surface: diversity of polysaccharide degraders in culturable epiphytic bacteria. AMB Express, 12(1), Article 98. https://doi.org/10.1186/s13568-022-01440-8

Renaudeau, D., Jensen, S. K., Ambye-Jensen, M., Adler, S., Bani, P., Juncker, E. & Stødkilde, L. (2022). Nutritional values of forage-legume-based silages and protein concentrates for growing pigs. Animal : an international journal of animal bioscience, 16(7), Article 100572. https://doi.org/10.1016/j.animal.2022.100572

Andersen, F. D., Pedersen, K. D., Wilkens Juhl, D., Mygind, T., Chopin, P., B. Svenningsen, E., Poulsen, T. B., Braad Lund, M., Schramm, A., Gotfredsen, C. H. & Tørring, T. (2022). Triculamin: An Unusual Lasso Peptide with Potent Antimycobacterial Activity. Journal of Natural Products, 85(6), 1514-1521. https://doi.org/10.1021/acs.jnatprod.2c00065

Bogojevic, O., Nygaard, J. V., Wiking, L., Arevång, C. & Guo, Z. (2022). Designer phospholipids – structural retrieval, chemo-/bio- synthesis and isotopic labeling. Biotechnology Advances, 60, Article 108025. https://doi.org/10.1016/j.biotechadv.2022.108025

Li, Z., Anankanbil, S., Li, L., Lyu, J., Nadzieja, M. & Guo, Z. (2023). Alkylsuccinylated oxidized cellulose-based amphiphiles as a novel multi-purpose ingredient for stabilizing O/W emulsions. Food Hydrocolloids, 134, Article 108014. https://doi.org/10.1016/j.foodhyd.2022.108014

Ma, Y., Zhang, N., Vernet, G. & Kara, S. (2022). Design of Fusion Enzymes for Biocatalytic Applications in Aqueous and Non-aqueous Media. Frontiers in Bioengineering and Biotechnology, 10, Article 944226. https://doi.org/10.3389/fbioe.2022.944226

Yang, T., Zhang, Y., Xu, L., Zhu, H., Zhang, J., Guo, Z., Huang, F. & Zheng, M. (2022). pH-Switchable Pickering Interfacial Biocatalysis: One-Pot Enzymatic Synthesis of Phytosterol Esters with Low-Value Rice Bran Oi. ACS Sustainable Chemistry & Engineering, 10(21), 6963–6972. https://doi.org/10.1021/acssuschemeng.1c08719

de Jonge, N., Poulsen, J. S., Vechi, N. T., Kofoed, M. V. W. & Nielsen, J. L. (2022). Wood-Ljungdahl pathway utilisation during in situ H₂ biomethanation. Science of the Total Environment, 806(Part 3), Article 151254. https://doi.org/10.1016/j.scitotenv.2021.151254

Romio, C., Vedel Wegener Kofoed, M. & Bjarne Møller, H. (2022). Effect of ultrasonic and electrokinetic post-treatments on methane yield and viscosity of agricultural digestate. Bioresource Technology, 358, Article 127388. https://doi.org/10.1016/j.biortech.2022.127388

Röllig, R., Paul, C. E., Duquesne, K., Kara, S. & Alphand, V. (2022). Exploring the temperature effect on enantioselectivity of a Baeyer-Villiger biooxidation by the 2,5-DKCMO module: The SLM approach. ChemBioChem, 23(15), Article e202200293. https://doi.org/10.1002/cbic.202200293

Neuzil-Bunesova, V., Ramirez Garcia, A., Modrackova, N., Makovska, M., Sabolova, M., Spröer, C., Bunk, B., Blom, J. & Schwab, C. (2022). Feed Insects as a Reservoir of Granadaene-Producing Lactococci. Frontiers in Microbiology, 13, Article 848490. https://doi.org/10.3389/fmicb.2022.848490

Zhang, Y., Pedersen, J. N., Eser, B. E. & Guo, Z. (2022). Biodegradation of polyethylene and polystyrene: From microbial deterioration to enzyme discovery. Biotechnology Advances, 60, Article 107991. https://doi.org/10.1016/j.biotechadv.2022.107991

Dai, R. & Guo, Z. (2022). Pd/Ni-Al hydrotalcite for base-free alcohol oxidation: Dependency of activity and selectivity on palladium precursors and reduction reagents. Molecular Catalysis , 526, Article 112403. https://doi.org/10.1016/j.mcat.2022.112403

Stødkilde-Jørgensen, L., Lærke, H. N., Ambye-Jensen, M. & Jensen, S. K. (2022). Protein concentrates from lucerne; effect of processing on ileal digestibility. Animal - Science proceedings, 13(2), 145. Article O1. https://doi.org/10.1016/j.anscip.2022.04.002

Barbato, M., Palma, E., Marzocchi, U., Cruz Viggi, C., Rossetti, S., Aulenta, F. & Scoma, A. (2022). Snorkels enhance alkanes respiration at ambient and increased hydrostatic pressure (10 MPa) by either supporting the TCA cycle or limiting alternative routes for acetyl-CoA metabolism. Journal of Environmental Management, 316, Article 115244. https://doi.org/10.1016/j.jenvman.2022.115244

T. Grosmann, M., Andrade, T. A., di Bitonto, L., Pastore, C., Corazza, M. L., Tronci, S. & Errico, M. (2022). Hydrated metal salt pretreatment and alkali catalyzed reactive distillation: A two-step production of waste cooking oil biodiesel. Chemical Engineering and Processing - Process Intensification, 176, Article 108980. https://doi.org/10.1016/j.cep.2022.108980

Meyer, L.-E., Andersen, M. B. & Kara, S. (2022). A Deep Eutectic Solvent Thermomorphic Multiphasic System for Biocatalytic Applications. Angewandte Chemie International Edition, 61(31), Article e202203823. https://doi.org/10.1002/anie.202203823

Yazdi, F. G., Dalgaard, L. B., Li, Q., Ruscheweyh, H.-J., Thøgersen, R., Bertram, H. C. S., Hansen, M. & Schwab, C. (2022). Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women. Journal of Functional Foods, 93, Article 105089. https://doi.org/10.1016/j.jff.2022.105089

Dalby, F. R., Guldberg, L. B., Feilberg, A. & Kofoed, M. V. W. (2022). Reducing greenhouse gas emissions from pig slurry by acidification with organic and inorganic acids. PLoS One, 17(5), Article e0267693. https://doi.org/10.1371/journal.pone.0267693

Ambye-Jensen, M., (2022). Støtte til kvalificering af bioraffineringsprojekter – Del 1, No. 2022-0356347, 4 p., May 12, 2022.

Irla, M. & Wendisch, V. F. (2022). Efficient cell factories for the production of N-methylated amino acids and for methanol-based amino acid production. Microbial Biotechnology, 15(8), 2145-2159. https://doi.org/10.1111/1751-7915.14067

Lyu, J., Zhang, J., Zhu, J., Chen, S., Han, T., Zhang, Y., Gao, R., Xie, G. & Guo, Z. (2022). Molecular dynamics simulation guided distal mutation of Thermotoga naphthophila β-glucosidase for significantly enhanced synthesis of galactooligosaccharides and expanded product scope. International Journal of Biological Macromolecules, 210, 21-32. https://doi.org/10.1016/j.ijbiomac.2022.05.002

Huang, Z., Guo, S., Guo, Z., He, Y. & Chen, B. (2022). Integrated green one-step strategy for concurrent recovery of phycobiliproteins and polyunsaturated fatty acids from wet Porphyridium biomass. Food Chemistry, 389, Article 133103. https://doi.org/10.1016/j.foodchem.2022.133103

Milic, M., Byström, E., Domínguez de María, P. & Kara, S. (2022). Enzymatic Cascade for the Synthesis of 2,5-Furandicarboxylic Acid in Biphasic and Microaqueous Conditions: ‘Media-Agnostic’ Biocatalysts for Biorefineries. ChemSusChem, 15(9), Article e202102704. https://doi.org/10.1002/cssc.202102704

Mapelli, F., Barbato, M., Chouaia, B., Riva, V., Daffonchio, D. & Borin, S. (2022). Bacterial community structure and diversity along the halocline of Tyro deep-sea hypersaline anoxic basin. Annals of Microbiology, 72(1), Article 7. https://doi.org/10.1186/s13213-022-01667-7

Liu, G., Bogojevic, O., Pedersen, J. N. & Guo, Z. (2022). Edible oleogels as solid fat alternatives: Composition and oleogelation mechanism implications. Comprehensive Reviews in Food Science and Food Safety, 21(3), 2077-2104. https://doi.org/10.1111/1541-4337.12928

Xie, D., Ji, X., Dai, Y., He, Y., Sun, H., Guo, Z., Yang, Y., Zheng, X. & Chen, B. (2022). Chlorella vulgaris cultivation in pilot-scale to treat real swine wastewater and mitigate carbon dioxide for sustainable biodiesel production by direct enzymatic transesterification. Bioresource Technology, 349, Article 126886. https://doi.org/10.1016/j.biortech.2022.126886

Aagaard, J. B., Sivelle, C., Fischer, M., Byskov, K., Laursen, N. S., Pfützner, W., Jakob, T., Möbs, C., Miehe, M. & Spillner, E. (2022). Nanobody-based human antibody formats act as IgE surrogate in hymenoptera venom allergy. Allergy: European Journal of Allergy and Clinical Immunology, 77(9), 2859-2862. https://doi.org/10.1111/all.15391

Andrade, T. A. & Ambye-Jensen, M. (2022). Process Integration and Techno-Economic Assessment of a Green Biorefinery Demonstration Scale Platform for Leaf Protein Production. In L. Montastruc & S. Negny (Eds.), Computer Aided Chemical Engineering: 32nd European Symposium on Computer Aided Process Engineering (Vol. 51, pp. 877-882). Article 147 Elsevier. https://doi.org/10.1016/B978-0-323-95879-0.50147-8, https://doi.org/10.1016/B978-0-323-95879-0.50147-8

Nærdal, I., Netzer, R., Irla, M., Krog, A., Heggeset, T. M. B., Wendisch, V. F. & Brautaset, T. (2017). L-lysine production by Bacillus methanolicus: Genome-based mutational analysis and L-lysine secretion engineering. Journal of Biotechnology, 244, 25-33. https://doi.org/10.1016/j.jbiotec.2017.02.001

Klein, V. J., Irla, M., López, M. G., Brautaset, T. & Brito, L. F. (2022). Unravelling Formaldehyde Metabolism in Bacteria: Road towards Synthetic Methylotrophy. Microorganisms, 10(2), Article 220. https://doi.org/10.3390/microorganisms10020220

Ng, K.-S., Chang, Y.-C., Chen, Y.-P., Lo, Y.-H., Wang, S.-Y. & Chen, M.-J. (2022). Characterization of exopolysaccharide-producing lactic acid bacteria from Taiwanese ropy fermented milk and their application in low-fat fermented milk. Animal Bioscience, 35(2), 281-289. https://doi.org/10.5713/ab.21.0251

Wang, S.-Y., Huang, R.-F., Ng, K.-S., Chen, Y.-P., Shiu, J.-S. & Chen, M.-J. (2021). Co-Culture Strategy of Lactobacillus kefiranofaciens HL1 for Developing Functional Fermented Milk. Foods, 10(9), 2098. Article 2098. https://doi.org/10.3390/foods10092098

Khider, M. L. K., Brautaset, T. & Irla, M. (2021). Methane monooxygenases: central enzymes in methanotrophy with promising biotechnological applications. World Journal of Microbiology and Biotechnology, 37(4), Article 72. https://doi.org/10.1007/s11274-021-03038-x

Irla, M., Hakvåg, S. & Brautaset, T. (2021). Developing a riboswitch-mediated regulatory system for metabolic flux control in thermophilic bacillus methanolicus. International Journal of Molecular Sciences , 22(9), Article 4686. https://doi.org/10.3390/ijms22094686

Brito, L. F., Irla, M., Nærdal, I., Le, S. B., Delépine, B., Heux, S. & Brautaset, T. (2021). Evaluation of Heterologous Biosynthetic Pathways for Methanol-Based 5-Aminovalerate Production by Thermophilic Bacillus methanolicus. Frontiers in Bioengineering and Biotechnology, 9, Article 686319. https://doi.org/10.3389/fbioe.2021.686319

Gruenberg, M., Irla, M., Myllek, S. & Draths, K. (2021). Characterization of two 3-deoxy-D-Arabino-Heptulosonate 7-phosphate synthases from Bacillus methanolicus. Protein Expression and Purification, 188, Article 105972. https://doi.org/10.1016/j.pep.2021.105972

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Article e202101625. https://doi.org/10.1002/cctc.202101625

Bonefeld, B. E., Lawther, M., Kristensen, C., Bentsen, N. S., Jørgensen, U. & Ambye-Jensen, M. (2019). MAN-MADE TEXTILE FIBRE OF NON-WOOD SIDESTREAM BIOMASS: - GRØNNE HOSER INBIOM PROJECT -. Poster session presented at Circular Bioeconomy Days 2019, Foulum, Denmark. https://conferences.au.dk/fileadmin/conferences/2019/bioeconomy/Posters/Birgit_Bonefeld_Man-made_textile_fibre_of_nonwood_biomass_sidestream_-_Final.pdf

Garcia Soriano, D. A., Andersen, F. D., Nygaard, J. V. & Tørring, T. (2021). ColFeatures: Automated data extraction and classification of bacterial colonies. bioRxiv. https://doi.org/10.1101/2021.05.27.445853

Meyer, J., Meyer, L.-E. & Kara, S. (2022). Enzyme immobilization in hydrogels: A perfect liaison for efficient and sustainable biocatalysis. Engineering in Life Sciences, 22(3-4), 165-177. https://doi.org/10.1002/elsc.202100087

Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), Article e202100606. https://doi.org/10.1002/cbic.202100606

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2022). The use of treatment wetlands plants for protein and cellulose valorization in biorefinery platform. Science of the Total Environment, 810, Article 152376. https://doi.org/10.1016/j.scitotenv.2021.152376

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