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Department of Biological and Chemical Engineering

Publications by Medical Biotechnology

Are you looking for publications by Section of Medical Biotechnology? On this page you can find all the publications made by the Section of Medical Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Lobley, C. M. C., Sandy, J., Sanchez-Weatherby, J., Mazzorana, M., Krojer, T., Nowak, R. P. & Sorensen, T. L. (2016). A generic protocol for protein crystal dehydration using the HC1b humidity controller. Acta crystallographica Section D: Structural biology, 72(Pt 5), 629-40. https://doi.org/10.1107/S2059798316003065

Liu, Z., Yoshihara, A., Kelly, C., Heap, J. T., Marqvorsen, M. H. S., Jenkinson, S. F., Wormald, M. R., Otero, J. M., Estévez, A., Kato, A., Fleet, G. W. J., Estévez, R. J. & Izumori, K. (2016). 6-Deoxyhexoses from L-Rhamnose in the Search for Inducers of the Rhamnose Operon: Synergy of Chemistry and Biotechnology. Chemistry: A European Journal, 22(35), 12557-12565. https://doi.org/10.1002/chem.201602482

Liu, Y., Zhou, G., Liu, Z., Guo, M., Jiang, X., Taskin, M. B., Zhang, Z., Liu, J., Tang, J., Bai, R., Besenbacher, F., Chen, M. & Chen, C. (2017). Mussel Inspired Polynorepinephrine Functionalized Electrospun Polycaprolactone Microfibers for Muscle Regeneration. Scientific Reports, 7(1), 8197. Article 8197. https://doi.org/10.1038/s41598-017-08572-z

Lin, L., Cui, H., Zeng, G., Chen, M., Zhang, H., Xu, M., Shen, X., Bortolini, C. & Dong, M. (2013). Ag-CuFe2O4 magnetic hollow fibers for recyclable antibacterial materials. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 1(21), 2719-2723. https://doi.org/10.1039/c3tb20223b

Lin, L., Cui, H., Zhou, H., Zhang, X., Bortolini, C., Chen, M., Liu, L. & Dong, M. (2015). Nanoliposomes containing Eucalyptus citriodora as antibiotic with specific antimicrobial activity. Chemical Communications, 51(13), 2653-5. https://doi.org/10.1039/c4cc09386k

Liljenhjerte, J. & Nygaard, J. V. (2021). Evaluating stabilizing initiatives to extend coiled tubing reach. Journal of Petroleum Science and Engineering, 205, Article 108905. https://doi.org/10.1016/j.petrol.2021.108905

Liljenhjerte, J., Vudayagiri, S., von Solms, N. & Nygaard, J. V. (2023). Feasibility of periodic stabilizers for extending coiled tubing reach. Geoenergy Science and Engineering, 227, Article 211779. https://doi.org/10.1016/j.geoen.2023.211779

Liebau, E., Spillner, E. & Henkle-Dührsen, K. (1997). pOVEX vector: Prokaryotic expression and purification of onchocerciasis vaccine candidate antigens as fusion proteins with the 24 kD Onchocerca volvulus glutathione S-transferase. Tropical Medicine & International Health, 2(7), 691-694.

Li, Y. Y., Femenias, M. R., Aslan, H. H., Yu, Y. Y., Howard, K., Dong, MD., Besenbacher, F. F. & Chen, M. M. (2014). Ultraporous interweaving electrospun microfibers from PCL-PEO binary blends and their inflammatory responses. Nanoscale, 6(6), 3392-3402. https://doi.org/10.1039/c3nr06197c

Li, Y., Femenias, M. R., Yu, Y., Besenbacher, F. & Chen, M. (2015). Delivery of Dexamethasone from electrospun PCL-PEO binary fibers and their effects on inflammation regulation. R S C Advances, 5, 34166-34172. https://doi.org/10.1039/c5ra03099d

Li, Y., Gregersen, H. V., Nygaard, J. V., Cheng, W., Yu, Y., Huang, Y., Dong, M., Besenbacher, F. & Chen, M. (2015). Ultraporous nanofeatured PCL–PEO microfibrous scaffolds enhance cell infiltration, colonization and myofibroblastic differentiation. Nanoscale, 7(36), 14989-14995. https://doi.org/10.1039/c5nr04244e

Li, Y., Slemming-Adamsen, P., Wang, J., Song, J., Wang, X., Yu, Y., Dong, MD., Chen, C., Besenbacher, F. & Chen, M. (2017). Light responsive hybrid nanofibres for on-demandtherapeutic drug and cell delivery. Journal of Tissue Engineering and Regenerative Medicine, 11(8), 2411–2420. https://doi.org/10.1002/term.2169

Li, D., Dong, MD., Besenbacher, F., Huang, Y. & Chen, M. (2016). The preparation of a recyclable catalyst of silver nanoparticles dispersed in mesoporous silica nanofiber matrix. RSC Advances, 6(70), 65613 - 65618. https://doi.org/10.1039/C6RA10867A

Li, D., Dong, MD., Besenbacher, F., Huang, Y. & Chen, M. (2016). The preparation of a recyclable catalyst of silver nanoparticles dispersed in mesoporous silica nanofiber matrix. Journal of Biotechnology & Biomaterials, 6(3(Suppl)), 40-40. https://doi.org/10.4172/2155-952X.C1.052

Li, D., Chen, Y., Zhang, Z. & Chen, M. (2018). Mesoporous Nanofibers Mediated Targeted Anti-cancer Drug Delivery. MRS Advances, 3(50), 2991-3002. https://doi.org/10.1557/adv.2018.425, https://doi.org/10.1557/adv.2018.425

Le, D. Q. S., Wang, Y., Foss, M., Besenbacher, F., Nygaard, J. V. & Bünger, C. (2011). IMPLANT FOR TREATMENT OF SKELETAL DEFORMITIES. (Patent No. WO/2011/116773).

Le, D. Q. S., Andersen, M. Ø., Baatrup, A., Chen, M., Chen, M., Lysdahl, H., Besenbacher, F., Bünger, C. & Kjems, J. (2011). Process for Modifying the Surface Morphology of a Medical Device: PA 2011 70752.

Laursen, S. H., Hansen, S. G., Taskin, M. B., Chen, M., Wogensen, L., Nygaard, J. V. & Axelsen, S. M. (2023). Electrospun nanofiber mesh with connective tissue growth factor and mesenchymal stem cells for pelvic floor repair: Long-term study. Journal of Biomedical Materials Research. Part B: Applied Biomaterials, 111(2), 392-401. https://doi.org/10.1002/jbm.b.35158

Lauritsen, S. H., Bertelsen, L. B., Daugård, P., Laustsen, C., Nielsen, N., Nygaard, J. V. & Stødkilde-Jørgensen, H. (2015). Bioreactor for quantification of cell metabolism by MR-hyperpolarization. Biomedical Physics & Engineering Express, 1(4). https://doi.org/10.1088/2057-1976/1/4/047003

Laugesen, I. G., Stenderup, K., Andersen, S. M., de Darkó, E., Dam, T. N. & Rosada, C. (2010). Valrubicin activates PKCalfa and inhibits phosphorylation of p38 MAPK. Journal of Investigative Dermatology, (130).

Laugesen, I. G., Hauge, E., Andersen, S. M., Stenderup, K., de Darkó, E., Dam, T. N. & Rosada, C. (2013). Valrubicin activates PKCa in keratinocytes: a conceivable mode of action in treating hyper-proliferative skin diseases. Journal of Drugs in Dermatology, 12(10), 1156-62.

Kumar Gurumurthy, R., Pleissner, K.-P., Chumduri, C., Meyer, T. F. & Mäurer, A. P. (2022). Single object profiles regression analysis (SOPRA): a novel method for analyzing high-content cell-based screens. BMC Bioinformatics , 23, Article 440 (2022. https://doi.org/10.1186/s12859-022-04981-8

Kumar Gurumurthy, R., Koster, S., Kumar, N., Meyer, T. F. & Chumduri, C. (2022). Patient-derived and mouse endo-ectocervical organoid generation, genetic manipulation and applications to model infection. Nature Protocols (Online), 17, 1658–1690. https://doi.org/10.1038/s41596-022-00695-6

Kumar Gurumurthy, R., Kumar, N. & Chumduri, C. (2024). Culturing and Differentiation of Patient-derived Ectocervical Epithelial Stem Cells using Air-Liquid Interphase and Matrigel Scaffold. In M. Baratta (Ed.), Epithelial Cell Culture: methods and protocols (Vol. 2, pp. 109-122). Humana Press.

Kumar, N., Prakash, P. G., Wentland, C., Kurian, S. M., Jethva, G., Brinkmann, V., Mollenkopf, H. J., Krammer, T., Toussaint, C., Saliba, A. E., Biebl, M., Jürgensen, C., Wiedenmann, B., Meyer, T. F., Gurumurthy, R. K. & Chumduri, C. (2024). Decoding spatiotemporal transcriptional dynamics and epithelial fibroblast crosstalk during gastroesophageal junction development through single cell analysis. Nature Communications, 15(1), Article 3064. https://doi.org/10.1038/s41467-024-47173-z

Kuipers, S. B. & Kofoed, M. V. W. (2023). Biomethanation of syngas in packed bed reactors: A study of adaptation and microbial pathways in a thermophilic mixed consortium. Bioresource Technology Reports, 24, Article 101667. https://doi.org/10.1016/j.biteb.2023.101667

Kristiansen, B., Gross-Petersen, J., Fog Gjersøe, N., Riber, H. J. & Nygaard, J. V. (2017). Innovative Pipeline Concepts. Danish Hydrocarbon Research and Technology Centre.

Kristensen, S. K., Salamone, S., Rasmussen, M. R., Marqvorsen, M. H. S. & Jensen, H. H. (2016). Glycosyl ortho-Methoxybenzoates: Catalytically Activated Glycosyl Donors with an Easily Removable and Recyclable Leaving Group. European Journal of Organic Chemistry, 2016(32), 5365-5376. https://doi.org/10.1002/ejoc.201600747

Krishna, K., Galsgaard, R., Heide-Jørgensen, S., Bechsgaard, T. K., Zegdi, R., Bräuner, L. E., Nygaard, J. V. & Johansen, P. (2015). The effect of TAVI oversizing on valve tissue stresses. Poster session presented at The 25th Annual Meeting of the Scandinavian Society for Research in Cardiothoracic Surgery, Geilo, Norway.

Kötzler, M. P., Blank, S., Bantleon, F. I., Wienke, M., Spillner, E. & Meyer, B. (2013). Donor assists acceptor binding and catalysis of human α1,6-fucosyltransferase. A C S Chemical Biology, 8(8), 1830-40. https://doi.org/10.1021/cb400140u

Kötzler, M. P., Blank, S., Bantleon, F. I., Spillner, E. & Meyer, B. (2012). Donor substrate binding and enzymatic mechanism of human core α1,6-fucosyltransferase (FUT8). B B A - General Subjects, 1820(12), 1915-1925. https://doi.org/10.1016/j.bbagen.2012.08.018

Kötzler, M. P., Blank, S., Behnken, H. N., Alpers, D., Bantleon, F. I., Spillner, E. & Meyer, B. (2012). Formation of the immunogenic α1,3-fucose epitope: elucidation of substrate specificity and of enzyme mechanism of core fucosyltransferase A. Insect Biochemistry and Molecular Biology, 42(2), 116-25. https://doi.org/10.1016/j.ibmb.2011.11.004

Koster, S., Kumar Gurumurthy, R., Kumar, N., Ganish Prakash, P., Dhanraj, J., Bayer, S., Berger, H., Kurian, S. M., Drabkina, M., Mollenkopf, H.-J., Goosmann, C., Brinkmann, V., Nagel, Z., Mangler, M., Meyer, T. F. & Chumduri, C. (2022). Modelling Chlamydia and HPV co-infection in patient-derived ectocervix organoids reveals distinct cellular reprogramming. Nature Communications, 13, Article 1030. https://doi.org/10.1038/s41467-022-28569-1

Kölln, J., Braren, I., Bredehorst, R. & Spillner, E. (2007). Purification of native and recombinant cobra venom factor using thiophilic adsorption chromatography. Protein and Peptide Letters, 14(5), 475-80.

Kölln, J., Bredehorst, R. & Spillner, E. (2005). Engineering of human complement component C3 for catalytic inhibition of complement. Immunology Letters, 98(1), 49-56. https://doi.org/10.1016/j.imlet.2004.10.010

Kölln, J., Spillner, E., Andrä, J., Klensang, K. & Bredehorst, R. (2004). Complement inactivation by recombinant human C3 derivatives. Journal of Immunology, 173(9), 5540-5.

Kölln, J., Matzas, M., Jänner, N., Mix, T., Klensang, K., Bredehorst, R. & Spillner, E. (2004). Functional analysis of Cobra Venom Factor/human C3 chimeras transiently expressed in mammalian cells. Molecular Immunology, 41(1), 19-28. https://doi.org/10.1016/j.molimm.2004.02.003

Kolln, J., Ren, H.-M., Da, R.-R., Zhang, Y., Spillner, E., Olek, M., Hermanowicz, N., Hilgenberg, L. G., Smith, M. A., van den Noort, S. & Qin, Y. (2006). Triosephosphate isomerase- and glyceraldehyde-3-phosphate dehydrogenase-reactive autoantibodies in the cerebrospinal fluid of patients with multiple sclerosis. Journal of Immunology, 177(8), 5652-8.

Köhler, J., Blank, S., Müller, S., Bantleon, F., Frick, M., Huss-Marp, J., Lidholm, J., Spillner, E. & Jakob, T. (2014). Component resolution reveals additional major allergens in patients with honeybee venom allergy. Journal of Allergy and Clinical Immunology, 133(5), 1383-1389.e6. https://doi.org/10.1016/j.jaci.2013.10.060

Kofoed, M. V., Stief, P., Poulsen, M. & Schramm, A. (2007). In situ detection of denitrifying bacteria by mRNA-targeted nucleic acid probes and catalyzed reporter deposition. Poster session presented at Annual Conference of the Association for General and Applied Microbiology (VAAM), Osnabrück, Germany.

Kofoed, M. V. W., Mohanakrishnan, J., Schramm, A. & Meyer, R. L. (2008). Effect of nitrate on activity and community structure of a sulfidogenic wastewater biofilm. Poster session presented at 12th International Symposium on Microbial Ecology: Microbial Diversity - Sustaining the Blue Planet, Cairns, Australia.

Kofoed, M. (2010). Diversity and Regulation of Nitrate-Reducing and Denitrifying Bacteria in Aquatic Systems. Det Naturvidenskabelige Fakultet, Aarhus Universitet.

Kofoed, M. V. W., Nielsen, D. A., Revsbech, N. P. & Schramm, A. (2012). Fluorescence in situ hybridization (FISH) detection of nitrite reductase transcripts (nirS mRNA) in Pseudomonas stutzeri biofilms relative to a microscale oxygen gradient. Systematic and Applied Microbiology, 35(8), 513-517. https://doi.org/10.1016/j.syapm.2011.12.001

Kofoed, M., Stief, P., Hauzmayer, S., Schramm, A. & Herrmann, M. (2012). Higher nitrate-reducer diversity in macrophyte-colonized compared to unvegetated freshwater sediment. Systematic and Applied Microbiology, 35(7), 465-472. https://doi.org/10.1016/j.syapm.2012.08.005

Kofoed, M. V. W., Østedgaard-Munck, D. N., Agneessens, L., Bentien, A. & Ottosen, L. D. M. (2019). Engineering perspectives in microbial electrosynthesis. Poster session presented at AU Biological and Chemical Engineering
Conference
, Aarhus, Denmark.

Kofoed, M. V. W., Jensen, M. B. & Ottosen, L. D. M. (2021). Biological upgrading of biogas through CO2 conversion to CH4. In Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 321-362). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00012-X

Kock, S. A., Nygaard, J. V., Eldrup, N., Fründ, E.-T., Klærke, A., Paaske, W. P., Falk, E. & Yong Kim, W. (2008). Mechanical stresses in carotid plaques using MRI-based fluid-structure interaction models. Journal of Biomechanics, 41(8), 1651-1658. https://doi.org/10.1016/j.jbiomech.2008.03.019

Kleikamp, H. B. C., Palacios, P. A., Kofoed, M. V. W., Papacharalampos, G., Bentien, A. & Nielsen, J. L. (2024). The Selenoproteome as a Dynamic Response Mechanism to Oxidative Stress in Hydrogenotrophic Methanogenic Communities. Environmental Science & Technology, 58(15), 6637-6646. https://doi.org/10.1021/acs.est.3c07725

Kjems, J., Bünger, C., Nygaard, J. V. & Mygind, T. (2005). Making implants last a lifetime. In iNANO Annual Report 2005 (pp. 14-15).

Kjeldsen, C. R., Stenderup, K., Clausen, J. T., Hasselager, E. & Dam, T. N. (2007). How is Keratinocyte Proliferation Induced by Interleukin 20? In Ikke angivet (Vol. 127, pp. 340). J Invest Dermatol.

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