Department of Biological and Chemical Engineering

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Publications by Bioprocess Engineering

Are you looking for publications by Section of Bioprocess Engineering? On this page you can find all the publications made by the Section of Bioprocess Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Ingribelli, E., Modrackova, N., Anim, N., Krausova, B., Amin, A., Vinkler, J., Vlkova, E., Schwab, C. & Neuzil-Bunesova, V. (2026). Longitudinal profiling of one infant fecal microbiota over the first three years: effects of probiotics and prebiotics. Journal of Functional Foods, 143, Article 107413. https://doi.org/10.1016/j.jff.2026.107413
Bambace, M. F., Bauder, K. L., Schneider, A., Andersen, F. A., Irla, M., Martinez, M. M. & Schwab, C. (2026). Towards an holistic bioprocess to produce multifunctional bioingredients with Propionibacteriaceae. FEMS Microbiology Letters, 373, Article fnag068. https://doi.org/10.1093/femsle/fnag068
Vaupel, S., Meyer, L. E., Domínguez de María, P. & Kara, S. (2026). Scaling Up Is Not the Same but Bigger: Overcoming (Some) Limitations in Enzymatic Decarboxylations in Rotating Bed Reactors in Deep Eutectic Solvents. Organic Process Research and Development, 30(6), 1652-1661. https://doi.org/10.1021/acs.oprd.6c00074
Fragoso-Jiménez, J. C., Sigala, J. C., Delvigne, F., Martínez, A., Lara, A. R. & Gosset, G. (2026). Severe Restriction of Glucose Import Enhances Recombinant Protein Production in Escherichia coli. Biotechnology Journal, 21(6), Article e70268. https://doi.org/10.1002/biot.70268
Nair, P. S., Kim, H., Kang, S., Jeon, B. S., Angenent, L. T. & Sang, B. I. (2026). Hydrogen supplementation improves glucose-based n-caproate production in Caproiciproducens galactitolivorans with reverse β-oxidation-associated redox remodeling. Bioresource Technology, 458, Article 135089. https://doi.org/10.1016/j.biortech.2026.135089
Fang, F., Lopez-Rodulfo, I. M., Gallego-Lobillo, P. & Martinez, M. M. (2026). Thermal stability and bioaccessibility of apple phenolics in starch systems are governed by their molecular motifs, plant cell walls, and cell wall pre-loading. Food Chemistry, 522, Article 149994. https://doi.org/10.1016/j.foodchem.2026.149994
Zahid, M., Prajapati, S., Alamdari, G., Tittmann, K. & Kara, S. (2026). Comprehensive Biophysical Profiling Evidences Self-Oligomerization of Bacterially Expressed Pc Protein. ChemBioChem, 27(11), Article e70405. https://doi.org/10.1002/cbic.70405
Puglisi, A., Falcini, C., Napoletano, F., Duránte Salmerón, D. A., Cvjetko Bubalo, M., de Gonzalo, G., Sieber, V., Pick, A., Alcántara, A. R., Domínguez de María, P., Abranches, D. O., Coutinho, J. A. P. & Kara, S. (2026). Deciphering pH Behavior in Deep Eutectic Solvents: Synergizing Experimental Data and Computational Modeling. ChemCatChem, 18(11), Article e70846. https://doi.org/10.1002/cctc.70846
Napoletano, F., Zhang, N., Domínguez de María, P. & Kara, S. (2026). Thiol-Containing Deep Eutectic Solvents as 2-In-1 Cofactor Regeneration Media For Oxidoreductases: Understanding Non-Innocent Solvents. ChemCatChem, 18(11), Article e70854. https://doi.org/10.1002/cctc.70854
Grøn, L. V., Muñoz-Duarte, L., Marshall, I. P. G., Johnsen, N. K., Eser, B. E., Ma, Y., Eken, M., Kofoed, M. V. W., Koren, K. & Philips, J. (2026). Adaptive laboratory evolution increased biofilm formation by Sporomusa ovata through a mutation in galU. Biofilm, 11, Article 100368. https://doi.org/10.1016/j.bioflm.2026.100368
Wijesooriya, M. M., Eskildsen, M., Calegari, R. P., Nielsen, J. L. & Kofoed, M. V. W. (2026). Bio-integrated carbon capture and utilization of CO2-to-methane under increasing concentrations of capture agent N-methyl diethanolamine (MDEA). Carbon Capture Science and Technology, 19, Article 100635. https://doi.org/10.1016/j.ccst.2026.100635
Calegari, R. P., Ambye-Jensen, M., Hermansson, C. & Kofoed, M. V. W. (2026). Influence of biochar feedstock and dosage on sulfur dynamics and buffering behavior in anaerobic digestion. Poster session presented at 34th European Biomass Conference & Exhibition, The Hague, Netherlands.
Svenningsen, T., Merrild, A., Wang, F., Hansen, F. D., Johnson, T. G., Iwase, R., Viennet, T., Larsen, M. K., Link, A. J. & Tørring, T. (2026). Biosynthesis, Structure, and Antibiotic Properties of Gelatinamin A, a Triculamin-Like Lasso Peptide. ChemBioChem, 27(10), Article e70378. https://doi.org/10.1002/cbic.70378
dos Passos, N. H. M., Schultz, P., Sørensen, M. F. & Ambye-Jensen, M. (2026). Production of single cell protein from ryegrass residual liquid fraction in a green biorefinery process. Biocatalysis and Agricultural Biotechnology, 74, Article 104060. https://doi.org/10.1016/j.bcab.2026.104060
Lyu, J., Ding, S., Wolff, C. D., Gao, R. & Guo, Z. (2026). Regio-Stereoselective Synthesis of Galactosyl-sn-2-glycerol by Thermotoga naphthophila Glycosidase-Catalyzed Transglycosylation in a Cosolvent-Mediated System: Kinetic and Thermodynamic Insights. ACS Sustainable Chemistry & Engineering, 14(17), 8221-8232. https://doi.org/10.1021/acssuschemeng.6c00122
Bai, L., Luo, S., Thøgersen, J., Xiong, X., Guo, Z. & Wei, Z. (2026). Mechanistic Insights into Per- and Polyfluoroalkyl Substance (PFAS) Photolysis under Intensified Simulated Solar Light. Environmental Science and Technology, 60(16), 12562-12573. https://doi.org/10.1021/acs.est.5c16178
Schlaiß, C., Baur, S. T., Marsh, J. W., Gemeinhardt, K. & Angenent, L. T. (2026). Genetic modification of Clostridium kluyveri for heterologous n-butanol and n-hexanol production. Applied and Environmental Microbiology, 92(4), Article e0005826. https://doi.org/10.1128/aem.00058-26
Gerstenberger, J., Werbilo, T., Kourist, R. & Kara, S. (2026). High-Yield Expression of Arylmalonate Decarboxylase in Escherichia coli Through High-Cell-Density Cultivation Strategies. ChemBioChem, 27(8), Article e70339. https://doi.org/10.1002/cbic.70339
Elvan Gezer, M., Ayoubi, L., Bruheim, P. & Schwab, C. (2026). Deoxyhexose metabolism of food-related Lactobacillaceae and identification of a distinctive 1,2-propanediol utilization pathway in Liquorilactobacillus ghanensis DSM 18630. Food Microbiology, 139, Article 105118. https://doi.org/10.1016/j.fm.2026.105118
Bechtner, J., Hosek, J. & Schwab, C. (2026). Fecal Material of Captive Wild Animals as Source of CAZymes With Application Potential. ChemBioChem, 27(8), Article e70315. https://doi.org/10.1002/cbic.70315
Panetta, F. G., Bechtner, J., Furch, A., Wefers, D., Rohm, H., Jaros, D., Wagemans, A. M. & Nachtigall, C. (2026). Intrinsic viscosity of uncharged polysaccharides: A comparative study of determination methods. Food Hydrocolloids, 179, Article 112768. https://doi.org/10.1016/j.foodhyd.2026.112768
Jensen, L. M., Glushchuk, A., Hjorth, T. P. & Lara, A. R. (2026). Genetically Programmed Control of Overflow Metabolism. Biotechnology and Bioengineering, 123(6), 1624-1633. https://doi.org/10.1002/bit.70200
Ambrose, H. W., Jiang, T., Kofoed, M. V. W. & Mortensen, L. (2026). Water circularity in Power-to-X: strategies for integrating water reuse into emerging energy systems. Current Opinion in Environmental Sustainability, 80, Article 101623. https://doi.org/10.1016/j.cosust.2026.101623
Ashraf, J. Z., Tsochatzis, E. D., Pati, S., Amodio, M. L., Apicella, A., Incarnato, L., Martinez, M. M., Lopez-Rodulfo, I. M. & Colelli, G. (2026). Comprehensive study on the migration on non-intentionally added substances from food contact films of PBS, PLA, and their blends. Food Packaging and Shelf Life, 54, Article 101719. https://doi.org/10.1016/j.fpsl.2026.101719
Ntihuga, J. N., Usack, J. G., Mayer, R., Kinbokun, A. A., Yesil, H., Zhou, M. & Angenent, L. T. (2026). Dried-bakery waste as a substrate for n-caproate and n-caprylate production via chain elongation. Waste Management, 216, Article 115454. https://doi.org/10.1016/j.wasman.2026.115454
Baur, T., Allaart, M. T., Zipperle, A., Contreras, G., Fink, C., Angenent, L. T. & Molitor, B. (2026). Metabolic engineering of Methanothermobacter thermautotrophicus ΔH for recombinant acetoin production. Metabolic Engineering Communications, 22, Article e00275. https://doi.org/10.1016/j.mec.2026.e00275
Hashemi, F., Mogensen, L., Eriksen, J., Ambye-Jensen, M., Andrade, T. A., Møller, H. B., Jørgensen, U., Wahid, R., Dupont, Y. L., Cong, W., Zhen, H., Dorca-Preda, T. & Knudsen, M. T. (2026). Assessing the carbon footprint of leaf protein concentrate and biomethane from organic multispecies grasslands. Abstract from EGU General Assembly 2026, Vienna, Austria. https://doi.org/10.5194/egusphere-egu26-14447
Palucha, N., Quataert, K., Vlaeminck, E., Schröder, E., De Winter, K. & Soetaert, W. (2025). High-throughput screening of acetogenic strains for growth and metabolite profiles on readily available biomass. Bioresource Technology, 419, Article 132026. https://doi.org/10.1016/j.biortech.2024.132026
Palucha, N., Fojt, J., Holátko, J., Hammerschmiedt, T., Kintl, A., Brtnický, M., Řezáčová, V., De Winterb, K., Uitterhaegen, E. & Kučerík, J. (2024). Does poly-3-hydroxybutyrate biodegradation affect the quality of soil organic matter? Chemosphere, 352, Article 141300. https://doi.org/10.1016/j.chemosphere.2024.141300
Palucha, N., Vlaeminck, E., Uitterhaegen, E., Quataert, K., De Winter, K. & Soetaert, W. (2026). Acetogens beyond gas fermentation: Enhancing bioconversion of lignocellulosic biomass. Biotechnology Advances, 89, Article 108868. https://doi.org/10.1016/j.biotechadv.2026.108868
Berretta, A. & Schwab, C. (2025). Fermentation-driven interactions of gut microbes with their environment. Essays in Biochemistry, 69(6), 1-12. https://doi.org/10.1042/EBC20253057
García Martínez, J. B., Behr, J., Andrade, T. A., Blouin, S., Costa, J. & Denkenberger, D. (2026). Global potential of integrated biorefineries for leaf protein and sugar: Producing sustainable food and preventing starvation in catastrophes. Sustainable Production and Consumption, 64, 247-265. https://doi.org/10.1016/j.spc.2026.02.009
Lopez-Rodulfo, I. M., Rasmussen, M. K., Hamaker, B. & M.Martinez, M. (2026). Selective detoxification of digesta revealed how cold-pressed apple fractions modulate transepithelial glucose transport and stimulate GLP-1 secretion. Food Chemistry, 509, Article 148588. https://doi.org/10.1016/j.foodchem.2026.148588
Tvilum, M. S., Nielsen, C. B., Steensgaard, I., Poulsen, T. B., Johannsen, M. & Tørring, T. (2026). Hypoxia-induced production of the cyclolipodepsipeptide BE-43547 by Micromonospora sp. RV43. Microbiology, 172(2), Article 001662. https://doi.org/10.1099/mic.0.001662
Bambace, M. F., Ng, K. S., Jensen, K. W., Schneider, A., Gezer, M. E., Marietou, A., Aarseth, A. K., Regnet, A., Fønss, K. G., Sundekilde, U. K. & Schwab, C. (2026). Development of novel microbial synthetic consortia for the production of antimicrobial fermentates containing caproate. Applied Microbiology and Biotechnology, 110(1), Article 85. https://doi.org/10.1007/s00253-026-13718-z
Aagaard, J. B., Gandini, R., Ballegaard, A.-S. R., Krogstrup Jensen, B., Dorn, B., Verner, A., Lenstrup, A., Sønderholm, M., Miehe, M., Pfützner, W., Jakob, T., Andersen, G. R., Möbs, C. & Spillner, E. (2026). Nanobody-based IgG simultaneously inhibit the allergenic and enzymatic activity of the dominant honeybee venom allergen. Nature Communications, 17(1), Article 1814. https://doi.org/10.1038/s41467-026-69572-0
Palacios, P. A. & Kofoed, M. V. W. (2026). Demonstration of H2/CO2 acetogenesis by Acetobacterium wieringae in a trickle-bed reactor without organic substrates. Chemical Engineering Journal Advances, 25, Article 101029. https://doi.org/10.1016/j.ceja.2025.101029
Huertas-Díaz, L., Hosek, J., Gram-Hansen, D., Frei, R., Roduit, C., Sasaki, M., Lauener, R. P., Schwab, C. & C. K.-CARE Study Group (2026). pH-Dependent Effects of Short-chain Carboxylic Acids and Buffer Systems On Clostridioides difficile in Vitro and in Vivo. Microbial Ecology, 89(1), 45. Article 45. https://doi.org/10.1007/s00248-026-02694-6
Ambye-Jensen, M. & Moirangthem, K. (2025). Pretreatment of Biomass: Structural Modification, Preparation, and Fractionation of Biomass for Further Conversion. In Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era (pp. 265-294). Cambridge University Press. https://doi.org/10.1017/9781108950831.008
Khider, M. L. K., Irla, M., López, M. G., Gispert, A., Konjetzko, T., Meliawati, M., Schmid, J., Brautaset, T. & Brito, L. F. (2026). CRISPR-Cas9-driven genome editing in Bacillus methanolicus MGA3. Frontiers in Microbiology, 16, Article 1728984. https://doi.org/10.3389/fmicb.2025.1728984
Dai, R., Zhou, B., Zeng, J., Qian, P., Sun, Y., Zhou, Y. & Guo, Z. (2026). Boosting catalytic dye degradation in Fe2O3 nanozyme through Cu-doping mediated phase transformation. Journal of Environmental Chemical Engineering, 14(1), Article 120625. https://doi.org/10.1016/j.jece.2025.120625
Zhang, N., Bittner, J. P., Pfleger, A., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2026). Deciphering alcohol dehydrogenase catalysis in glycerol-based deep eutectic solvents through experimental and computational insights. Reaction Chemistry and Engineering, 11(4), 874-887. https://doi.org/10.1039/d5re00448a
Lara, A. R., López-Pérez, M. & Fernández, F. J. (2025). Reprogramming microbial cells to improve the production of biopharmaceuticals and fine chemicals. In Whole Cell Biocatalysis: Fundamentals and Applications (pp. 21-64). Elsevier. https://doi.org/10.1016/B978-0-443-23998-4.00002-6
Romio, C., Kofoed, M. V. W. & Møller, H. B. (2026). Alkaline treatment with KOH for enhanced biogas recovery from agricultural feedstock and digested residues. Biomass and Bioenergy, 209, Article 108913. https://doi.org/10.1016/j.biombioe.2025.108913
Meyer, J., Meyer, L. E., Borg, H., Dorfs, D. & Kara, S. (2025). Functionalized poly(aspartic acid) hydrogel particles as carriers for covalent enzyme immobilization. RSC Sustainability, 3(8), 3554-3566. https://doi.org/10.1039/d5su00280j
Qiu, J., Bibi, A., Lara, A. R., Wang, Q. & Dai, Z. (2026). Biosensors for coenzyme A thioester derivatives: Development, optimization and applications. Biotechnology Advances, 87, Article 108767. https://doi.org/10.1016/j.biotechadv.2025.108767
Engelbrecht, N., Ambrose, H. W., Sieborg, M. U. & Kofoed, M. V. W. (2026). Heat integration aspects of exothermic biomethanation: A pilot reactor with shell-and-tube heat exchange capability. Energy Conversion and Management, 353, Article 121168. https://doi.org/10.1016/j.enconman.2026.121168
Wang, F., Vig Benfeldt, F., Khazaee, Z., Nygaard Nielsen, M. L., Marks, M. J., Ouyang, Y., Lock, N., Gao, R., Guo, Z. & Eser, B. E. (2026). Metal–Organic Framework Encapsulation of Ferulic Acid Decarboxylase: Robust Biocomposites Catalyzing Synthetically Useful Decarboxylation and Synergized CO2Fixation Reactions. ACS Sustainable Chemistry and Engineering, 14(4), 1884-1898. https://doi.org/10.1021/acssuschemeng.5c09355
Nissen, S. H., Juul, L., Juel, N., Larsson, K., Nebel, C., Bruhn, A., Ambye-Jensen, M., Undeland, I. & Dalsgaard, T. K. (2026). Oxidative stability of protein concentrates from the green seaweed Ulva spp. Algal Research, 94, Article 104570. https://doi.org/10.1016/j.algal.2026.104570
Rosati, B., Skønager, J. T., Bektassov, M., Teng, Z., Glasius, M., Barbato, M., Bilde, M., Kristensen, K. V. & Tesson, S. V. M. (2026). Aerosolisation of microalgae: unveiling dimethyl-sulfide emissions during bubbling. npj Climate and Atmospheric Science, 9(1), Article 32. https://doi.org/10.1038/s41612-025-01305-4

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AU Engineering