Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Zhang, B., Nandakumar, R., Reinert, L. S., Huang, J., Laustsen, A., Gao, Z., Sun, C., Jensen, S. B., Troldborg, A., Assil, S., Berthelsen, M. F., Scavenius, C., Zhang, Y., Windross, S. J., Olagnier, D., Prabakaran, T., Bodda, C., Narita, R., Cai, Y. ... Paludan, S. R. (2020). Author Correction: STEEP mediates STING ER exit and activation of signaling (Nature Immunology, (2020), 21, 8, (868-879), 10.1038/s41590-020-0730-5). Nature Immunology, 21(11), 1468-1469. https://doi.org/10.1038/s41590-020-0803-5

Zhang, Y., Eser, B. E., Kristensen, P. & Guo, Z. (2020). Fatty acid hydratase for value-added biotransformation: A review. Chinese Journal of Chemical Engineering, 28(8), 2051-2063. https://doi.org/10.1016/j.cjche.2020.02.008

Chanquia, S. N., Huang, L., Garcia Linares, G., Dominguez de Maria, P. & Kara, S. (2020). Deep Eutectic Solvents as Smart Cosubstrate in Alcohol Dehydrogenase-Catalyzed Reductions. Catalysts, 10(9), 1-8. Artikel 1013. https://doi.org/10.3390/catal10091013

Appert, O., Garcia, A. R., Frei, R., Roduit, C., Constancias, F., Neuzil-Bunesova, V., Ferstl, R., Zhang, J., Akdis, C., Lauener, R., Lacroix, C. & Schwab, C. (2020). Initial butyrate producers during infant gut microbiota development are endospore formers. Environmental Microbiology, 22(9), 3909-3921. https://doi.org/10.1111/1462-2920.15167

Hjerrild, P., Tørring, T. & Poulsen, T. B. (2020). Dehydration reactions in polyfunctional natural products. Natural Product Reports, 37(8), 1043-1064. https://doi.org/10.1039/d0np00009d

Marietou, A., Kjeldsen, K. U. & Røy, H. (2020). Physicochemical and biological controls of sulfide accumulation in a high temperature oil reservoir. Applied Microbiology and Biotechnology, 104(19), 8467-8478. https://doi.org/10.1007/s00253-020-10828-0

He, D., Wei, W. & Guo, Z. (2020). Moderate Edible Oil Refining: State-of-the-Art in China. Journal of the American Oil Chemists' Society, 97(11), 1277-1279. https://doi.org/10.1002/aocs.12407

Hobisch, M., Holtmann, D., Gomes de Santos, P., Alcalde, M., Hollmann, F. & Kara, S. (2021). Recent developments in the use of peroxygenases – Exploring their high potential in selective oxyfunctionalisations. Biotechnology Advances, 51, Artikel 107615. https://doi.org/10.1016/j.biotechadv.2020.107615

Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S. & Kroutil, W. (2020). Extending the Library of Light‐Dependent Protochlorophyllide Oxidoreductases and their Solvent Tolerance, Stability in Light and Cofactor Flexibility. ChemCatChem, 12(16), 4044-4051. https://doi.org/10.1002/cctc.202000561

Zhang, J., Sturla, S. J., Lacroix, C. & Schwab, C. (2018). Gut microbial glycerol metabolism as an endogenous source of acrolein. mBio (Online), 9(1). https://doi.org/10.1128/mBio.01947-17

Santruckova, H., Kotas, P., Barta, J., Urich, T., Capek, P., Palmtag, J., Alves, R. J. E., Biasi, C., Diakova, K., Gentsch, N., Gittel, A., Guggenberger, G., Hugelius, G., Lashchinsky, N., Martikainen, P. J., Mikutta, R., Schleper, C., Schnecker, J., Schwab, C. ... Richter, A. (2018). Significance of dark CO2 fixation in arctic soils. Soil Biology and Biochemistry, 119, 11-21. https://doi.org/10.1016/j.soilbio.2017.12.021

Bengtsson, M., Wagner, K., Schwab, C., Urich, T. & Battin, T. J. (2018). Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels. Molecular Ecology, 27(14), 2913-2925. https://doi.org/10.1111/mec.14696

Bircher, L., Geirnaert, A., Hammes, F., Lacroix, C. & Schwab, C. (2018). Effect of cryopreservation and lyophilization on viability and growth of strict anaerobic human gut microbes. Microbial Biotechnology, 4(4), 721-733. https://doi.org/10.1111/1751-7915.13265

Asare, P. T., Greppi, A., Stettler, M., Schwab, C., J. A. Stevens, M. & Lacroix, C. (2018). Decontamination of minimally-processed fresh lettuce using reuterin produced by Lactobacillus reuteri. Frontiers in Microbiology, 9(1421), Artikel 1421. https://doi.org/10.3389/fmicb.2018.01421

Rocha Martin, V. N., Schwab, C., Krych, L., Voney, E., Geirnaert, A., Braegger, C. & Lacroix, C. (2019). Colonization of Cutibacterium Avidum During Infant Gut Microbiota Establishment. FEMS Microbiology Ecology, 95(1), Artikel fiy215. https://doi.org/10.1093/femsec/fiy215

Doo, E.-H., Schwab, C., Chassard, C. & Lacroix, C. (2019). Cumulative effect of yeast extract and fructooligosaccharide supplementation on composition and metabolic activity of elderly colonic microbiota in vitro. Journal of Functional Foods, 52, 43-53. https://doi.org/10.1016/j.jff.2018.10.020

Rocha Martin, V. N., Lacroix, C., Killer, J., Bunesova, V., Braegger, C. & Schwab, C. (2019). Cutibacterium avidum is phylogenetically diverse with a subpopulation being adapted to the infant gut. Systematic and Applied Microbiology, 42(4), 506-516. https://doi.org/10.1016/j.syapm.2019.05.001

Zhang, J., Lacroix, C., Wortmann, E., Ruscheweyh, H.-J., Sunagawa, S., Sturla, S. J. & Schwab, C. (2019). Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. BMC Microbiology, 19(99), Artikel 99. https://doi.org/10.1186/s12866-019-1483-x

Schwab, C., Voney, E., Ramirez Garcia, A., Vischer, M. & Lacroix, C. (2019). Characterization of the Cultivable Microbiota in Fresh and Stored Mature Human Breast Milk. Frontiers in Microbiology, 10, Artikel 2666. https://doi.org/10.3389/fmicb.2019.02666

Tetteh Asare, P., Zurfluh, K., Greppi, A., Lynch, D., Schwab, C., Stephan, R. & Lacroix, C. (2020). Reuterin demonstrates antimicrobial activity against a broad panel of human and poultry meat Campylobacter spp. isolates. Microorganisms, 8(1), Artikel 78. https://doi.org/10.3390/microorganisms8010078

Bircher, L., Schwab, C., Geirnaert, A., Greppi, A. & Lacroix, C. (2020). Planktonic and sessile artificial colonic microbiota harbor distinct composition and reestablish differently upon frozen and freeze-dried long-term storage. mSystems, 5(1), Artikel e00521-19. https://doi.org/10.1128/mSystems.00521-19

Greppi, A., Asare, P. T., Schwab, C., Zemp, N., Stephan, R. & Lacroix, C. (2020). Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from the chicken gastrointestinal tract. Frontiers in Microbiology, 11, Artikel 1166. https://doi.org/10.3389/fmicb.2020.01166

Modrackova, N., Vlkova, E., Tejnecky, V., Schwab, C. & Neuzil-Bunesova, V. (2020). Bifidobacterium β-glucosidase activity and fermentation of dietary plant glucosides is species and strain specific. Microorganisms, 8(6), Artikel 839. https://doi.org/10.3390/microorganisms8060839

Stødkilde, L., Ambye-Jensen, M. & Krogh Jensen, S. (2020). Biorefined grass-clover protein composition and effect on organic broiler performance and meat fatty acid profile. Journal of Animal Physiology and Animal Nutrition, 104(6), 1757-1767. https://doi.org/10.1111/jpn.13406

Mortensen, M. R., Skovsgaard, M. B., Märcher, A., Andersen, V. L., Palmfeldt, J., Nielsen, T. B., Tørring, T., Laursen, N. S., Andersen, K. R., Kjems, J. & Gothelf, K. V. (2020). Introduction of an Aldehyde Handle on Nanobodies by Affinity-Guided Labeling. Bioconjugate Chemistry, 31(5), 1295-1300. https://doi.org/10.1021/acs.bioconjchem.0c00151

Jørgensen, U., Kristensen, T., Jensen, S. K. & Ambye-Jensen, M., (2020). Bidrag til MOF spg. 8 i forbindelse med beslutningsforslag 15, Nr. 2020-0094295, 4 s., maj 14, 2020.

Thomsen, T. & Borre-Gude, S. (2021). Creating a Strong Safety Culture in an Undergraduate Engineering Program. Journal of Chemical Education, 98(1), 118-124. https://doi.org/10.1021/acs.jchemed.0c00035

Wang, F., Li, R., Jian, H., Huang, Z., Wang, Y., Guo, Z. & Gao, R. (2020). Design and construction of an effective expression system with aldehyde tag for site-specific enzyme immobilization. Catalysts, 10(4), Artikel 410. https://doi.org/10.3390/catal10040410

Njakou Djomo, S., Knudsen, M. T., Martinsen, L., Andersen, M. S., Ambye-Jensen, M., Møller, H. B. & Hermansen, J. E. (2020). Green proteins: An energy-efficient solution for increased self-sufficiency in protein in Europe. Biofuels, Bioproducts and Biorefining, 14(3), 605-619. https://doi.org/10.1002/bbb.2098

Hobisch, M., van Schie, M. M. C. H., Kim, J., Andersen, K. R., Alcalde, M., Kourist, R., Park, C. B., Hollmann, F. & Kara, S. (2020). Solvent‐Free Photobiocatalytic Hydroxylation of Cyclohexane. ChemCatChem, 12(16), 4009-4013. https://doi.org/10.1002/cctc.202000512

Madsen, S. L., Mathiassen, S. K., Dyrmann, M., Laursen, M. S., Paz, L.-C. & Nyholm Jørgensen, R. (2020). Open Plant Phenotype Database of Common Weeds in Denmark. Remote Sensing, 12(8), Artikel 1246. https://doi.org/10.3390/rs12081246

Pellerin, A., Antler, G., Marietou, A., Turchyn, A. V. & Jørgensen, B. B. (2020). The effect of temperature on sulfur and oxygen isotope fractionation by sulfate reducing bacteria (Desulfococcus multivorans). FEMS Microbiology Letters, 367(9), Artikel fnaa061. https://doi.org/10.1093/femsle/fnaa061

Kara, S. & von Langermann, J. (2020). Kompartimentierung bei den Enzymkaskaden: statisch oder Durchfluss. BioSpektrum, 26(2), 215-217. https://doi.org/10.1007/s12268-020-1348-8

Hansen, B. K., Larsen, C. K., Nielsen, J. T., Svenningsen, E. B., Van, L. B., Jacobsen, K. M., Bjerring, M., Flygaard, R. K., Jenner, L. B., Nejsum, L. N., Brodersen, D. E., Mulder, F. A. A., Tørring, T. & Poulsen, T. B. (2020). Structure and Function of the Bacterial Protein Toxin Phenomycin. Structure, 28(5), 528-539.e9. https://doi.org/10.1016/j.str.2020.03.003

Engel, J., Mthethwa, K. S., Opperman, D. J. & Kara, S. (2019). Optimisation of the Convergent Cascade for Synthesis of Epsilon-Caprolactone. Poster-session præsenteret på BioTrans 2019, Groningen, Holland.

He, Y., Zhang, B., Guo, S., Guo, Z., Chen, B. & Wang, M. (2020). Sustainable biodiesel production from the green microalgae Nannochloropsis: Novel integrated processes from cultivation to enzyme-assisted extraction and ethanolysis of lipids. Energy Conversion and Management, 209, Artikel 112618. https://doi.org/10.1016/j.enconman.2020.112618

Kara, S. (2020). Rare algae enzyme to convert cooking oil into ready-to-use biofuel. I J. Bruun (red.), Profile 2020 (s. 84-87). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Kara, S. (2020). She uses mushroom enzyme and light to create green chemicals. I J. Bruun (red.), Profile 2020 (s. 80-83). Aarhus Universitet, Institut for Ingeniørvidenskab . https://www.e-pages.dk/aarhusuniversitet/2231/html5/

Victoria, M., Klarskov, P., Agarwala, S., Hjorth, M., Zhang, Q. & Kara, S. (2020). How do we get more women in academia? I J. Bruun (red.), Profile 2020 (s. 16-19). Aarhus Universitet, Institut for Ingeniørvidenskab . http://www.e-pages.dk/aarhusuniversitet/2231/html5/

Jensen, R. K., Jabs, F., Miehe, M., Mølgaard, B., Pfützner, W., Möbs, C., Spillner, E. & Andersen, G. R. (2020). Structure of intact IgE and the mechanism of ligelizumab revealed by electron microscopy. Allergy: European Journal of Allergy and Clinical Immunology, 75(8), 1952-1961. https://doi.org/10.1111/all.14222

Philips, J. (2020). Extracellular electron uptake by acetogenic bacteria: Does H2 consumption favor the H2 evolution reaction on a cathode or metallic iron? Frontiers in Microbiology, 10, Artikel 2997. https://doi.org/10.3389/fmicb.2019.02997

Pedersen, J. N., Liu, S., Zhou, Y., Balle, T., Xu, X. & Guo, Z. (2020). Synergistic effects of binary ionic liquid-solvent systems on enzymatic esterification of esculin. Food Chemistry, 310, Artikel 125858. https://doi.org/10.1016/j.foodchem.2019.125858

Rauber, M., Roßbach, A., Jung, A., Müller, S., Möbs, C., Pfützner, W., Miehe, M., Spillner, E. & Jakob, T. (2020). The honey bee venom allergen Api m 10 displays one major IgE epitope, Api m 10160-174. Allergy: European Journal of Allergy and Clinical Immunology, 75(7), 1756-1759. https://doi.org/10.1111/all.14187

Pedersen, J. N., Pérez, B. & Guo, Z. (2019). Stability of cellulase in ionic liquids: correlations between enzyme activity and COSMO-RS descriptors. Scientific Reports, 9, Artikel 17479. https://doi.org/10.1038/s41598-019-53523-5

S.T.Srinivasamurthy, V., Böttcher, D., Engel, J., Kara, S. & Bornscheuer, U. T. (2020). A whole-cell process for the production of ε-caprolactone in aqueous media. Process Biochemistry, 88, 22-30. https://doi.org/10.1016/j.procbio.2019.10.009

Huang, L., Bittner, J. P., Dominguez De Maria, P., Jakobtorweihen, S. & Kara, S. (2020). Modeling Alcohol Dehydrogenase Catalysis in Deep Eutectic Solvent/Water Mixtures. ChemBioChem, 21(6), 811-817. https://doi.org/10.1002/cbic.201900624

Kragbæk Damborg, V., Krogh Jensen, S., Johansen, M., Ambye-Jensen, M. & Weisbjerg, M. R. (2019). Ensiled pulp from biorefining increased milk production in dairy cows compared with grass–clover silage. Journal of Dairy Science, 102(10), 8883-8897. https://doi.org/10.3168/jds.2018-16096

Lin, S., Liu, H., Svenningsen, E. B., Pedersen, C., Nørby, P., Tørring, T. & Poulsen, T. (2019). Diversity Focused Semisyntheses of Tetronate Polyether Ionophores. ChemRxiv. https://chemrxiv.org/articles/Diversity_Focused_Semisyntheses_of_Tetronate_Polyether_Ionophores/8299715

Lærke, H. N., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. I M. L. Chizzotti (red.), Energy and protein metabolism and nutrition (s. 177-178). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-891-9

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Revideret 16.01.2025

AU Engineering