Publications by Bioprocess Engineering

Are you looking for publications by Section of Bioprocess Engineering? On this page you can find all the publications made by the Section of Bioprocess Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Lara, A. R., Jaén, K. E., Sigala, J. C., Mühlmann, M., Regestein, L. & Büchs, J. (2017). Characterization of Endogenous and Reduced Promoters for Oxygen-Limited Processes Using Escherichia coli. ACS Synthetic Biology, 6(2), 344-356. https://doi.org/10.1021/acssynbio.6b00233

Lara, A. R., Jaén, K. E., Folarin, O., Keshavarz-Moore, E. & Büchs, J. (2019). Effect of the oxygen transfer rate on oxygen-limited production of plasmid DNA by Escherichia coli. Biochemical Engineering Journal, 150, Artikel 107303. https://doi.org/10.1016/j.bej.2019.107303

Cortés, J. T., Flores, N., Bolívar, F., Lara, A. R. & Ramírez, O. T. (2016). Physiological effects of pH gradients on Escherichia coli during plasmid DNA production. Biotechnology and Bioengineering, 113(3), 598-611. https://doi.org/10.1002/bit.25817

Lara, A. R., Vazquez-Limón, C., Gosset, G., Bolívar, F., López-Munguía, A. & Ramírez, O. T. (2006). Engineering Escherichia coli to improve culture performance and reduce formation of by-products during recombinant protein production under transient intermittent anaerobic conditions. Biotechnology and Bioengineering, 94(6), 1164-1175. https://doi.org/10.1002/bit.20954

Lara, A. R., Taymaz-Nikerel, H., Mashego, M. R., Van Gulik, W. M., Heijnen, J. J., Ramírez, O. T. & Van Winden, W. A. (2009). Fast dynamic response of the fermentative metabolism of Escherichia coli to aerobic and anaerobic glucose pulses. Biotechnology and Bioengineering, 104(6), 1153-1161. https://doi.org/10.1002/bit.22503

Grijalva-Hernández, F., Vega-Estrada, J., Escobar-Rosales, M., Ortega-López, J., Aguilar-López, R., Lara, A. R. & Montes-Horcasitas, M. D. C. (2019). High kanamycin concentration as another stress factor additional to temperature to increase pdna production in e. Coli dh5α batch and fed-batch cultures. Microorganisms, 7(12), Artikel 711. https://doi.org/10.3390/microorganisms7120711

Lara, A. R. (2011). Recombinant protein production in escherichia coli. Revista Mexicana de Ingeniera Quimica, 10(2), 209-223.

Lara, A. R., Galindo, J., Jaén, K. E., Juárez, M. & Sigala, J. C. (2020). Physiological response of escherichia coli W3110 and BL21 to the aerobic expression of vitreoscilla hemoglobin. Journal of Microbiology and Biotechnology, 30(10), 1592-1596. https://doi.org/10.4014/JMB.2004.04030

Oliveira, P. H., Mairhofer, J., Alves, P. M., Lara, A. R. & Kontoravdi, C. (2015). Advances in the development of biotherapeutics. BioMed Research International, 2015, Artikel 793876. https://doi.org/10.1155/2015/793876

Pablos, T. E., Mora, E. M., Le Borgne, S., Ramírez, O. T., Gosset, G. & Lara, A. R. (2011). Vitreoscilla hemoglobin expression in engineered Escherichia coli: Improved performance in high cell-density batch cultivations. Biotechnology Journal, 6(8), 993-1002. https://doi.org/10.1002/biot.201000405

Soto, R., Caspeta, L., Barrón, B., Gosset, G., Ramírez, O. T. & Lara, A. R. (2011). High cell-density cultivation in batch mode for plasmid DNA production by a metabolically engineered E. coli strain with minimized overflow metabolism. Biochemical Engineering Journal, 56(3), 165-171. https://doi.org/10.1016/j.bej.2011.06.003

Velazquez, D., Jaén, K. E., Sigala, J. C. & Lara, A. R. (2021). Minimized backbone and novel microaerobic promoters boost plasmid DNA production. Process Biochemistry, 106, 130-136. https://doi.org/10.1016/j.procbio.2021.04.013

Licona-Cassani, C., Lara, A. R., Cabrera-Valladares, N., Escalante, A., Hernández-Chávez, G., Martinez, A., Bolívar, F. & Gosset, G. (2014). Inactivation of pyruvate kinase or the phosphoenolpyruvate: Sugar phosphotransferase system increases shikimic and dehydroshikimic acid yields from glucose in bacillus subtilis. Journal of Molecular Microbiology and Biotechnology, 24(1), 37-45. https://doi.org/10.1159/000355264

Fragoso-Jiménez, J. C., Gutierrez-Rios, R. M., Flores, N., Martinez, A., Lara, A. R., Delvigne, F. & Gosset, G. (2022). Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories. Microbial Cell Factories, 21(1), Artikel 189. https://doi.org/10.1186/s12934-022-01909-y

Velazquez, D., Sigala, J. C., Martínez, L. M., Gaytán, P., Gosset, G. & Lara, A. R. (2022). Glucose transport engineering allows mimicking fed-batch performance in batch mode and selection of superior producer strains. Microbial Cell Factories, 21(1), Artikel 183. https://doi.org/10.1186/s12934-022-01906-1

Taymaz-Nikerel, H. & Lara, A. R. (2022). Vitreoscilla haemoglobin: A tool to reduce overflow metabolism. Microorganisms, 10(1), Artikel 43. https://doi.org/10.3390/microorganisms10010043

Krausch, N., Kaspersetz, L., Gaytán-Castro, R. D., Schermeyer, M. T., Lara, A. R., Gosset, G., Cruz Bournazou, M. N. & Neubauer, P. (2023). Model-Based Characterization of E. coli Strains with Impaired Glucose Uptake. Bioengineering, 10(7), Artikel 808. https://doi.org/10.3390/bioengineering10070808

Islas, F., Sabido, A., Sigala, J. C. & Lara, A. R. (2023). Design of microaerobically inducible miniR1 plasmids. mLife, 2(1), 101-104. https://doi.org/10.1002/mlf2.12058

Pohlen, L., García, E., Martínez, L. M., Flores, N., Büchs, J., Gosset, G. & Lara, A. R. (2025). Sigma Factors as Potential Targets to Enhance Recombinant Protein Expression. Biotechnology and Bioengineering, 122(6), 1598-1607. https://doi.org/10.1002/bit.28958

Timmis, K., Karahan, Z. C., Ramos, J. L., Koren, O., Pérez-Cobas, A. E., Steward, K., de Lorenzo, V., Caselli, E., Douglas, M., Schwab, C., Rivero, V., Giraldo, R., Garmendia, J., Turner, R. J., Perlmutter, J., Borrero de Acuña, J. M., Nikel, P. I., Bonnet, J., Sessitsch, A. ... Häggblom, M. (2025). Microbes Saving Lives and Reducing Suffering. Microbial Biotechnology, 18(1), Artikel e70068. https://doi.org/10.1111/1751-7915.70068

Sieborg, M. U., Engelbrecht, N., Singh, A., Schnürer, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Unraveling the effects of temperature on mass transfer and microbiology in thermophilic and extreme thermophilic trickle bed biomethanation reactors. Chemical Engineering Journal, 509, Artikel 161179. https://doi.org/10.1016/j.cej.2025.161179

Claes, N., Foged, N., Norvin Vilhelmsen, T., Rumph Frederiksen, R., Kim, H. & Vest Christiansen, A. (2021). Data-driven hydrogeophysical and redox modelling. I 1st Conference on Hydrogeophysics: Contribution to Exploration and Management of Groundwater, Land-Use and Natural Hazards under a Changing Climate, Held at Near Surface Geoscience Conference and Exhibition 2021, NSG 2021 EAGE Publishing BV. https://doi.org/10.3997/2214-4609.202120078

Šáner, A., Ambye-Jensen, M., Jensen, S. K., Vorkamp, K., Ceccato, M. & Smith, A. M. (2025). Biochar produced from bio-refined herbaceous fibre residue for feed and technical purposes. Journal of Analytical and Applied Pyrolysis, 187, Artikel 107004. https://doi.org/10.1016/j.jaap.2025.107004

Struwe, H., Grimm, C., Dräger, G., Beutel, S., Alcalde, M., Kirschning, A. & Kara, S. (2025). Expanding the “Terpenome”: Applications of Unspecific Peroxygenases (UPOs) in Oxidations of Unnatural Terpenoids. ChemCatChem, 17(1), Artikel e202401414. https://doi.org/10.1002/cctc.202401414

Merrild, A., Svenningsen, T., Chevrette, M. & Tørring, T. (2025). Evolution-Guided Discovery of Antimycobacterial Triculamin-Like Lasso Peptides. Angewandte Chemie International Edition, 64(20), Artikel e202425134. https://doi.org/10.1002/anie.202425134

Bittner, J. P., Zhang, N., Domínguez de María, P., Smirnova, I., Kara, S. & Jakobtorweihen, S. (2025). Molecular Understanding of Activity Changes of Alcohol Dehydrogenase in Deep Eutectic Solvents. Journal of Physical Chemistry B, 129(4), 1197-1213. https://doi.org/10.1021/acs.jpcb.4c06523

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: A new reaction of diiron enzymes (Angewandte Chemie - International Edition (2011) 50 DOI: 10.1002/anie.201101552). Angewandte Chemie - International Edition, 51(32). https://doi.org/10.1002/anie.201204831

Kim, H., Mi, H. T. N., Ahn, J. H., Lee, J. S., Eser, B. E., Choi, J. & Han, J. (2024). Glycoside-metabolizing oxidoreductase D3dgpA from human gut bacterium. Frontiers in Bioengineering and Biotechnology, 12, Artikel 1413854. https://doi.org/10.3389/fbioe.2024.1413854

Mi, H. T. N., Chaiyasarn, S., Eser, B. E., Tan, S. R. S., Burapan, S. & Han, J. (2022). Allyl Aryl Ether Cleavage by Blautia sp. MRG-PMF1 Cocorrinoid O-Demethylase. Microbiology Spectrum, 10(5). https://doi.org/10.1128/spectrum.03305-22

Eser, B. E., Das, D., Han, J., Jones, P. R. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: Investigation of kinetics and requirement for an external electron donor (Biochemistry (2011) 50:49 (10743-10750). DOI: 10.1021/bi2012417). Biochemistry, 51(28), 5703. https://doi.org/10.1021/bi300837j

Li, Z., Zhang, Y., Balle, T., Eser, B. E., Fang, Y. & Guo, Z. (2025). Preparation of Cello-Oligosaccharides by Precise-Controlled Enzymatic Depolymerization and Its Amphiphilic Functionalization for High-Oil Load Emulsification. Journal of Agricultural and Food Chemistry, 73(2), 1458–1467. https://doi.org/10.1021/acs.jafc.4c08886

Li, Q., Marietou, A., Andersen, F. F., Hosek, J., Scavenius, C., Zhang, J. & Schwab, C. (2025). In vitro investigations on the impact of fermented dairy constituents on fecal microbiota composition and fermentation activity. Microbiology Spectrum, 13(3), e0219324. https://doi.org/10.1128/spectrum.02193-24

Elvan Gezer, M., Gravlund Fønss, K., Bambace, M. F., Marietou, A., Sandberg Overby, S., Sundekilde, U. & Schwab, C. (2025). Investigation on L-rhamnose metabolism of Loigolactobacillus coryniformis subsp. coryniformis DSM 20001 and its propionate-containing fermentates. Applied and Environmental Microbiology, 91(1), e0161324. Artikel e0161324. https://doi.org/10.1128/aem.01613-24

Muñoz-Duarte, L., Chakraborty, S., Grøn, L. V., Bambace, M. F., Catalano, J. & Philips, J. (2025). H₂ Consumption by Various Acetogenic Bacteria Follows First-Order Kinetics up to H₂ Saturation. Biotechnology and Bioengineering, 122(4), 804-816. https://doi.org/10.1002/bit.28904

Palacios Jaramillo, P. A., Sieborg, M. U., Kuipers, S. B., Fruergaard, S. & Kofoed, M. V. W. (2025). Temperature tactics: Targeting acetate or methane production in autotrophic H2/CO2 conversion with mixed cultures. Biochemical Engineering Journal, 214, Artikel 109574. https://doi.org/10.1016/j.bej.2024.109574

Schmitz, L. M., Kreitli, N., Obermaier, L., Weber, N., Rychlik, M. & Angenent, L. T. (2024). Power-to-vitamins: producing folate (vitamin B₉) from renewable electric power and CO₂ with a microbial protein system. Trends in Biotechnology, 42(12), 1691-1714. https://doi.org/10.1016/j.tibtech.2024.06.014

Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D'Agostino, P. M., de Rond, T., Del Pup, E., Duncan, K. R., Gu, W. ... Medema, M. H. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53(D1), D678-D690. https://doi.org/10.1093/nar/gkae1115

Mekureyaw, M. F., Junker, A., Bai, L., Zhang, Y., Wei, Z. & Guo, Z. (2025). Laccase based per- and polyfluoroalkyl substances degradation: Status and future perspectives. Water Research, 271, Artikel 122888. https://doi.org/10.1016/j.watres.2024.122888

Benfeldt, F. V., Wang, F., Bredahl, N., Gao, R., Guo, Z. & Eser, B. E. (2024). A Highly Efficient Ferulic Acid Decarboxylase from Capronia coronata: Characterization and Biocatalytic Applications. (s. xxx-xxx). ChemRxiv https://doi.org/10.26434/chemrxiv-2024-0npph-v2

Ouyang, Y., Jiang, Z., Ulstrup, S., Guo, Z., Wang, Z. & Dong, MD. (2024). Enhancing MoS2 Electronic Performance with Solid-State Lithium-Ion Electrolyte Contacts through Dielectric Screening. ACS Nano, 18(49), 33310-33318. https://doi.org/10.1021/acsnano.4c05973

Andrade, T. A., López Fetzer, D. E., Hachow Motta dos Passos, N. & Ambye-Jensen, M. (2025). Maceration and fractionation technologies in a demonstration-scale green biorefinery: Proteins, sugars, and lipids extraction and energy efficiency. Industrial Crops and Products, 223, Artikel 120142. https://doi.org/10.1016/j.indcrop.2024.120142

Gkantzou, E., Koulopoulou, T., Brass, H., Schönauer, D., Glieder, A. & Kara, S. (2024). Unspecific peroxygenase immobilization in 3D-printed microfluidics: towards tailor-made screening platforms. Catalysis Science and Technology, 14(22), 6496-6502. https://doi.org/10.1039/d4cy00869c

Kundu, D., Samanta, P., Bhowmick, S., Panigrahi, S., Dey, S., Nath, K., Rajak, R. C., Sherpa, K. C., Barathi, A., Kofoed, M. V. W., Kumar, S. & Ki Lin, C. S. (2024). Heterogeneous catalysts for sustainable biofuel production: A paradigm shift towards renewable energy. Biocatalysis and Agricultural Biotechnology, 62, Artikel 103432. https://doi.org/10.1016/j.bcab.2024.103432

Ng, K. S., Bambace, M. F., Andersen, E. B., Meyer, R. L. & Schwab, C. (2024). Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica. Microbiology Spectrum, 12(11), Artikel e0165824. https://doi.org/10.1128/spectrum.01658-24

Rohbohm, N., Lang, M., Erben, J., Gemeinhardt, K., Patel, N., Ilic, I. K., Hafenbradl, D., Rodrigo Quejigo, J. & Angenent, L. T. (2024). Performance Effects of Different Shutdown Methods on Three Electrode Materials for Electromethanogenesis. ChemElectroChem, 11(21), Artikel e202400372. https://doi.org/10.1002/celc.202400372

Chanquia, S. N., Bittner, J. P., Santner, P., Szabó, L. K., Madsen, J. S., Øhlenschlæger, M. L., Sarvari, A. G., Merrild, A. H., Fo̷nss, K. G., Jaron, D., Lutz, L., Kara, S. & Eser, B. E. (2024). Active-Site Mutagenesis of Fatty Acid Photodecarboxylase: Experimental and Computational Insight into Substrate Chain-Length Specificity. ACS Catalysis, 14(21), 15837-15849. https://doi.org/10.1021/acscatal.4c02970

Nissen, S. H., Juul, L., Stødkilde, L., Bruhn, A., Ambye-Jensen, M. & Dalsgaard, T. K. (2024). Pilot-scale protein extraction of green seaweed (Ulva spp.) whole biomass and pulp – Investigating biochemical composition and protein digestibility in a rat trial. Food and Bioproducts Processing, 148, 353-364. https://doi.org/10.1016/j.fbp.2024.10.003

Ravenni, G., Thomsen, T. P., Smith, A. M., Ambye-Jensen, M., Rohde-Nielsen, K. T. & Henriksen, U. B. (2024). Integration of a drying and pyrolysis system in a green biorefinery: biochar product quality and impacts on the overall energy balance and climate footprint. Biomass Conversion and Biorefinery, 14(20), 25143-25159. https://doi.org/10.1007/s13399-023-04877-4

Svenningsen, T. (2024). Bridging the Gap: Understanding Triculamin Biosynthesis through In vitro Reconstitution and Genetic Analysis. Poster-session præsenteret på Microbial Secondary Metabolites
in Microbiomes , Helsingør, Danmark.

Svenningsen, T. (2024). Uncovering the biosynthesis of the non-canonical lasso peptide Triculamin through in vitro reconstitution. Poster-session præsenteret på 4th Synthetic Biology of Natural Products Conference, Cancun, Mexico.

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AU Engineering