Publications

Under publication list you can find a complete list of the publications that are written by employees at the Publications at Department of Biological and Chemical Engineering for example journal articles, books, reports etc.

The department also publishes technical reports which you can read more about under Technical reports.

Under PhD dissertations you will find the department's published PhD dissertations.

Publication list

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Zoppi, G., Andrade, T. A., Ward, A. J., Ambye-Jensen, M. & Biller, P. (2023). Biorefinery integration of a green protein platform for maximum resource utilization. Cleaner and Circular Bioeconomy, 6, Article 100064. https://doi.org/10.1016/j.clcb.2023.100064

Zong, L., Zhang, Y., Shao, Z., Wang, Y., Guo, Z., Gao, R. & Eser, B. E. (2021). Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids. Catalysts, 11(6), Article 665. https://doi.org/10.3390/catal11060665

Zong, L., Zhang, Y., Shao, Z., Ljubic, A., Jacobsen, C., Gao, R., Eser, B. E., Wang, Y., Wang, Y. & Guo, Z. (2023). Selective and Sustainable Production of Sub-terminal Hydroxy Fatty Acids by a Self-Sufficient CYP102 Enzyme from Bacillus Amyloliquefaciens. ChemBioChem, 24(18), Article e202300368. https://doi.org/10.1002/cbic.202300368

Zhu, K., Qin, W., Chen, Y., Liang, X., Xin, H., Huang, Z., Garces, H. F., Gan, Y., Sillanpää, M., Qiu, R., Guan, G. & Yan, K. (2024). Construction of N-Fe-S bridge in atomic iron catalyst for boosting Fenton-like reactions. Nano Today, 58, Article 102462. https://doi.org/10.1016/j.nantod.2024.102462

Zhu, Y., Yang, Y., Wu, S., Zhu, Y., Li, X., Mao, Q., Chen, Y., Shi, R., Zhong, J. & Wang, J. (2024). Hydrofluoric Acid-Free Broadband Near-Infrared Phosphors K₂LiMF₆:Cr³⁺ with Zero-Thermal Quenching: Structure, Luminescence, and Application. ACS Applied Materials and Interfaces, 16(36), 47912-47922. https://doi.org/10.1021/acsami.4c09500

Zhou, R., Mendanha dos Santos, T., Petersen, K. K., Ugilt Larsen, S., Smith, A. M. & Ottosen, C.-O. (2021). Developing plant bioassays to evaluate the performance of sustainable growing media. Acta Horticulturae, 1317, 351-358. https://doi.org/10.17660/ActaHortic.2021.1317.41

Zhou, Y., Pedersen, J. N., Pedersen, J. N., Jones, N. C., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Gao, R. & Guo, Z. (2022). Superanionic Solvent-Free Liquid Enzymes Exhibit Enhanced Structures and Activities. Advanced Science, 9(32), Article 2202359. https://doi.org/10.1002/advs.202202359

Zhou, P., Liu, W., Zhang, Y., Liu, G., Zhao, Z., Zhang, M., Wei , Z., Zhang, Y., Tang, X., Li, P., Deng, Y., Zhang, M. & Guo, Z. (2023). Tuning multi-purpose glycerol-based deep eutectic solvents for biocatalytic deacidification of high-acid rice bran oil: Kinetics, mechanism, and inhibition of side glycerolysis. LWT - Food Science and Technology, 189, Article 115535. https://doi.org/10.1016/j.lwt.2023.115535

Zhou, P., Zhang, Y., Liu, W., Jones, N. C., Hoffmann, S. V., Eser, B. E., Zhang, M., Ouyang, Y., Wang, F., Deng, Y., Zhang, M. & Guo, Z. (2024). Effect of Deep Eutectic Mixtures in Hydroxylation of Fatty Acids: A Correlation between Water Activity and Thermostability of FA-HY1. ACS Sustainable Chemistry & Engineering, 12(5), 1918-1929. https://doi.org/10.1021/acssuschemeng.3c05867

Zhou, M., Taiwo, K., Wang, H., Ntihuga, J. N., Angenent, L. T. & Usack, J. G. (2024). Anaerobic digestion of process water from hydrothermal treatment processes: a review of inhibitors and detoxification approaches. Bioresources and Bioprocessing, 11(1), Article 47. https://doi.org/10.1186/s40643-024-00756-6

Zhao, F., Chen, S., Xiang, H., Gao, T., Wang, D., Wei, D., Sillanpää, M., Ke, Y. & Tang, C. J. (2022). Selectively capacitive recovery of rare earth elements from aqueous solution onto Lewis base sites of pyrrolic-N doped activated carbon electrodes. Carbon, 197, 282-291. https://doi.org/10.1016/j.carbon.2022.06.033

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Article 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

Zhang, M., Gao, Y., Yu, C., Wang, J., Weng, K., Li, Q., He, Y., Guo, Z., Zhang, H., Huang, J. & Li, L. (2022). Transcriptome analysis of malate-induced Schizochytrium sp. FJU-512 reveals a novel pathway for biosynthesis of docosahexaenoic acid with enhanced expression of genes responsible for acetyl-CoA and NADPH accumulation. Frontiers in Microbiology, 13, Article 1006138. https://doi.org/10.3389/fmicb.2022.1006138

Zhang, Y., Eser, B. E., Kougioumtzoglou, G., Eser, Z., Poborsky, M., Kishino, S., Takeuchi, M., Ogawa, J., Kristensen, P. & Guo, Z. (2021). Effects of the engineering of a single binding pocket residue on specificity and regioselectivity of hydratases from Lactobacillus Acidophilus. Biochemical Engineering Journal, 171, Article 108006. https://doi.org/10.1016/j.bej.2021.108006

Zhang, Y., Eser, B. E. & Guo, Z. (2021). A bi‐enzymatic cascade pathway towards optically pure FAHFAs. ChemBioChem, 22(12), 2146-2153. https://doi.org/10.1002/cbic.202100070

Zhang, N., Steininger, F., Meyer, L.-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. https://doi.org/10.1021/acssuschemeng.1c03547

Zhang, Z., Cui, L., Zhang, Y., Klausen, L. H., Chen, M., Sun, D., Xu, S., Kang, S. & Shi, J. (2021). Regulation of carboxyl groups and structural defects of graphitic carbon nitride via environmental-friendly glucose oxidase ring-opening modulation. Applied Catalysis B: Environmental, 297, Article 120441. https://doi.org/10.1016/j.apcatb.2021.120441

Zhang, J., Du, Z., Fu, L., Han, Y., Zheng, W., Yu, F., Chen, H., Feng, L., Li, Y. & Ping, W. (2021). Novel anaerobic digestion and carbon dioxide emissions efficiency analysis of food waste treatment based on SBM-DEA model. Journal of Cleaner Production, 328, Article 129591. https://doi.org/10.1016/j.jclepro.2021.129591

Zhang, Y., Breum, N. M. D., Schubert, S., Hashemi, N., Kyhnau, R., Knauf, M. S., Mathialakan, M., Takeuchi, M., Kishino, S., Ogawa, J., Kristensen, P., Guo, Z. & Eser, B. E. (2022). Semi-rational Engineering of a Promiscuous Fatty Acid Hydratase for Alteration of Regioselectivity. ChemBioChem, 23(4), Article e202100606. https://doi.org/10.1002/cbic.202100606

Zhang, N., Müller, B., Kirkeby, T. Ø., Kara, S. & Loderer, C. (2022). Development of a thioredoxin based cofactor regeneration system for NADPH-dependent oxidoreductases. ChemCatChem, 14(7), Article e202101625. https://doi.org/10.1002/cctc.202101625

Zhang, Y., Pedersen, J. N., Eser, B. E. & Guo, Z. (2022). Biodegradation of polyethylene and polystyrene: From microbial deterioration to enzyme discovery. Biotechnology Advances, 60, Article 107991. https://doi.org/10.1016/j.biotechadv.2022.107991

Zhang, J. & Schwab, C. (2022). Is acrolein a reuterin-borne chemical hazard in biopreserved foods? Food Chemistry Advances, 1, Article 100044. https://doi.org/10.1016/j.focha.2022.100044

Zhang, N., Bittner, J. P., Fiedler, M., Beretta, T., De María, P. D., Jakobtorweihen, S. & Kara, S. (2022). Unraveling Alcohol Dehydrogenase Catalysis in Organic-Aqueous Biphasic Systems Combining Experiments and Molecular Dynamics Simulations. ACS Catalysis, 12(15), 9171-9180. https://doi.org/10.1021/acscatal.2c02881

Zhang, M., Timoshin, A., Al-Ammar, E. A., Sillanpaa, M. & Zhang, G. (2023). Power, cooling, freshwater, and hydrogen production system from a new integrated system working with the zeotropic mixture, using a flash-binary geothermal system. Energy, 263(Part D), Article 125959. https://doi.org/10.1016/j.energy.2022.125959

Zhang, Y., Plesner, T. J., Ouyang, Y., Zheng, Y.-C., Bouhier, E., Ingemann Berentzen, E., Zhang, M., Zhou, P., Zimmermann , W., Andersen, G. R. & Guo, Z. (2023). Computer-aided discovery of a novel thermophilic laccase for low-density polyethylene degradation. Journal of Hazardous Materials, 458, Article 131986. https://doi.org/10.1016/j.jhazmat.2023.131986

Zhang, J., Liu, J., Gao, B., Sillanpää, M. & Han, J. (2023). The efficiency and mechanism of excess sludge-based biochar catalyst in catalytic ozonation of landfill leachate. Journal of Hazardous Materials, 459, Article 132118. https://doi.org/10.1016/j.jhazmat.2023.132118

Zhang, Y., Le Friec, A., Zhang, Z., Müller, C. A., Du, T., Dong, M., Liu, Y. & Chen, M. (2023). Electroactive biomaterials synergizing with electrostimulation for cardiac tissue regeneration and function-monitoring. Materials Today, 70, 237-272. https://doi.org/10.1016/j.mattod.2023.09.005

Zhang, N., Domínguez de María, P. & Kara, S. (2024). Biocatalysis for the Synthesis of Active Pharmaceutical Ingredients in Deep Eutectic Solvents: State-of-the-Art and Prospects. Catalysts, 14(1), Article 84. https://doi.org/10.3390/catal14010084

Zhang, B.-C., Laursen, M. F., Hu, L., Hazrati, H., Narita, R., Jensen, L. S., Hansen, A. S., Huang, J., Zhang, Y., Ding, X., Muyesier, M., Nilsson, E., Banasik, A., Zeiler, C., Mogensen, T. H., Etzerodt, A., Agger, R., Johannsen, M., Kofod-Olsen, E. ... Jakobsen, M. R. (2024). Cholesterol-binding motifs in STING that control endoplasmic reticulum retention mediate anti-tumoral activity of cholesterol-lowering compounds. Nature Communications, 15(1), Article 2760. https://doi.org/10.1038/s41467-024-47046-5

Zhang, G., Li, Z., Guo, Z. & Charalampopoulos, D. (2024). Comparative extraction of melon seed (Cucumis melo L.) oil by conventional and enzymatic methods: physicochemical properties and oxidative stability. Journal of Agriculture and Food Research, 16, Article 101182. https://doi.org/10.1016/j.jafr.2024.101182

Zhang, L., Shi, G., Zhang, Y., Zhou, P. & Zhang, Y. (2024). Separation and characterization of the antioxidant active component from Maillard reaction products in xylose-lysine system. CYTA - Journal of Food, 22(1), Article 2348739. https://doi.org/10.1080/19476337.2024.2348739

Zhang, G. & Li, Z. (2024). Impact of melon seed oil cake with different particle sizes on bread quality. Food Production, Processing and Nutrition, 6(1), Article 44. https://doi.org/10.1186/s43014-024-00225-9

Zhang, N., Lahmann, V., Bittner, J. P., Domínguez de María, P., Jakobtorweihen, S., Smirnova, I. & Kara, S. (2025). Redox Biocatalysis in Lidocaine-Based Hydrophobic Deep Eutectic Solvents: Non-Conventional Media Outperform Aqueous Conditions. ChemSusChem, 18(6), Article e202402075. https://doi.org/10.1002/cssc.202402075

Zhang, Y., Zhao, M., Tan, C., Zhang, Z., Ouyang, Y., Yang, L., Sun, Q., Wang, W., Wang, Z. & Dong, M. (2025). Emerging NH₃ MEMS-Sensing Techniques and Application. Advanced Materials Technologies, Article e00474. Advance online publication. https://doi.org/10.1002/admt.202500474

zhang, Y., Friec, A. L., Sun, D. & Chen, M. (2023). Sinusoidal Stretchable Fibrous Electrodes Regulate Cardiac Contraction. Chemical Engineering Journal, 455, Article 140555. https://doi.org/10.1016/j.cej.2022.140555

Zegaou, B., Monir, M. E. A., Reguig, B. A., Fatmi, M., Albaqami, M. D., Mohammad, S. & Sillanpää, M. (2025). Structural, Mechanical, Optoelectronic, Magnetic and Thermodynamic Properties of GdM₂ (M = Fe, Co, Ni) for Optoelectronic Applications. Journal of Superconductivity and Novel Magnetism, 38(2), Article 124. https://doi.org/10.1007/s10948-025-06971-2

Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D'Agostino, P. M., de Rond, T., Del Pup, E., Duncan, K. R., Gu, W. ... Medema, M. H. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53(D1), D678-D690. https://doi.org/10.1093/nar/gkae1115

Zahra, S. A., Persiani, R., Dueholm, M. KD., van Loosdrecht, M., Nielsen, P. H., Seviour, T. W. & Lin, Y. (2024). Rethinking characterization, application, and importance of extracellular polymeric substances in water technologies. Current Opinion in Biotechnology, 89, Article 103192. https://doi.org/10.1016/j.copbio.2024.103192

Yu , W., in 'T Veld, M., Bossi, R., Ateia, M., Tobler, D. J., Feilberg, A., Bovet, N. E. & Johnson, M. S. (2021). Formation of Formaldehyde and Other Byproducts by TiO2 Photocatalyst Materials. Sustainability, 13(9), Article 4821. https://doi.org/10.3390/su13094821

You, X., Li, X., Sillanpää, M., Wang, R., Wu, C. & Xu, Q. (2022). Export of Dissolved Organic Carbon from the Source Region of Yangtze River in the Tibetan Plateau. Sustainability (Switzerland), 14(4), Article 2441. https://doi.org/10.3390/su14042441

Yin, T., Lin, H., Dong, Y., Wei, Z., Li, B., Liu, C. & Chen, X. (2021). Inhibition of cadmium releasing from sulfide tailings into the environment by carbonate-mineralized bacteria. Journal of Hazardous Materials, 419, Article 126479. https://doi.org/10.1016/j.jhazmat.2021.126479

Yesiltas, B., Garcia-Moreno, P. J., Sørensen, A.-D. M., Banerjee, C., Anankanbil, S., Guo, Z., Ogilby, P. R. & Jacobsen, C. (2023). The Use of Soy and Egg Phosphatidylcholines Modified with Caffeic Acid Enhances the Oxidative Stability of High-Fat (70%) Fish Oil-in-Water Emulsions. Colloids and Interfaces , 7(3), Article 60. https://doi.org/10.3390/colloids7030060

Yee, M. O., Ottosen, L. D. M. & Rotaru, A.-E. (2024). Electrical current disrupts the electron transfer in defined consortia. Microbial Biotechnology, 17(1), Article e14373. https://doi.org/10.1111/1751-7915.14373

Ye, S., Cheng, Y., Guo, Z., Wang, X. & Wei , W. (2023). A Lipid Toolbox of Sugar Alcohol Fatty Acid Monoesters for Single-component Lipid Nanoparticles with Temperature-controlled Release. Colloids and Surfaces B: Biointerfaces, 228, Article 113426. https://doi.org/10.1016/j.colsurfb.2023.113426

Ye, J., Mark Jensen, M., Goonesekera, E. M., Yu, R., Smets, B. F., Valverde-Pérez, B. & Domingo-Félez, C. (2024). Denitrifying communities enriched with mixed nitrogen oxides preferentially reduce N₂O under conditions of electron competition in wastewater. Chemical Engineering Journal, 498, Article 155292. https://doi.org/10.1016/j.cej.2024.155292

Yazdi, F. G., Dalgaard, L. B., Li, Q., Ruscheweyh, H.-J., Thøgersen, R., Bertram, H. C. S., Hansen, M. & Schwab, C. (2022). Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women. Journal of Functional Foods, 93, Article 105089. https://doi.org/10.1016/j.jff.2022.105089

Yasin, G., Kumar, A., Ajmal, S., Asim Mushtaq, M., Tabish, M., Saad, A., Assiri, M. A., Tariq Nazir, M. & Zhuo, Q. (2024). Advances and perspectives on heteronuclear dual-atomic catalysts for prevailing the linear scaling relationship in electrocatalytic CO₂ reduction. Coordination Chemistry Reviews, 501, Article 215589. https://doi.org/10.1016/j.ccr.2023.215589

Yao, Z., Wang, Y., Wang, R., Wang, X., Wang, Y., Zheng, X., Liu, C., Zhu, B., Zhou, M., Liu, Y. & Butterbach-Bahl, K. (2024). Long-term straw return to a wheat-maize system results in topsoil organic C saturation and increased yields while no stimulating or reducing yield-scaled N₂O and NO emissions. Agricultural and Forest Meteorology, 349, Article 109937. https://doi.org/10.1016/j.agrformet.2024.109937

Yang, Z., Su, R., Luo, S., Spinney, R., Cai, M., Xiao, R. & Wei, Z. (2017). Comparison of the reactivity of ibuprofen with sulfate and hydroxyl radicals: An experimental and theoretical study. Science of the Total Environment, 590-591, 751-760. https://doi.org/10.1016/j.scitotenv.2017.03.039, https://doi.org/10.1016/j.scitotenv.2017.03.039

Yang, T., Zhang, Y., Xu, L., Zhu, H., Zhang, J., Guo, Z., Huang, F. & Zheng, M. (2022). pH-Switchable Pickering Interfacial Biocatalysis: One-Pot Enzymatic Synthesis of Phytosterol Esters with Low-Value Rice Bran Oi. ACS Sustainable Chemistry & Engineering, 10(21), 6963–6972. https://doi.org/10.1021/acssuschemeng.1c08719

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