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Department of Biological and Chemical Engineering

Publications by Molecular and Cellular Biotechnology

Are you looking for publications by Section of Molecular and Cellular Biotechnology? On this page you can find all the publications made by the Section of Molecular and Cellular Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Svenningsen, T. (2024). Bridging the Gap: Understanding Triculamin Biosynthesis through In vitro Reconstitution and Genetic Analysis. Poster session presented at Microbial Secondary Metabolites
in Microbiomes , Helsingør, Denmark.

Svenningsen, T. (2024). Uncovering the biosynthesis of the non-canonical lasso peptide Triculamin through in vitro reconstitution. Poster session presented at 4th Synthetic Biology of Natural Products Conference, Cancun, Mexico.

Lambrecht, S., Gazizova, A., Kara, S., Meyer, J. & Jopp, S. (2024). Antimicrobial properties and biocompatibility of semi-synthetic carbohydrate-based ionic hydrogels. RSC Advances, 14(42), 30719-30731. https://doi.org/10.1039/d4ra05695g

Hougaard, R. F., Andersen, F. D. & Tørring, T. (2024). Scaffolding scientific inquiry: Adapting Tiny Earth for engaging high school students and their teachers in authentic research. Abstract from The Nordic conference on Science Education Research, NFSUN 2024, Reykjavik, Iceland.

Schwab, C. & Bambace, M. F. (2024). Traditional and novel applications of sourdough microbes in Northern Europe and the Baltic countries. In Sourdough Microbiota and Starter Cultures for Industry (pp. 93-129). Springer International Publishing. https://doi.org/10.1007/978-3-031-48604-3_4

Huang, Z., Qin, D., Abuduwupuer, X., Cao, L., Piao, Y., Shao, Z., Jiang, L., Guo, Z. & Gao, R. (2024). Regulate catalytic performance by engineering non-regular structure of extradiol dioxygenase: An entrance to bottom strategy. International Journal of Biological Macromolecules, 281(Part 1), 1-13. Article 136246. https://doi.org/10.1016/j.ijbiomac.2024.136246

Li, Q., Ruscheweyh, H. J., Østergaard, L. H., Libertella, M., Simonsen, K. S., Sunagawa, S., Scoma, A. & Schwab, C. (2024). Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. Microbiome, 12, Article 178. https://doi.org/10.1186/s40168-024-01863-4

Dalby, F. R., Hafner, S. D., Ambrose, H. W. & Adamsen, A. P. S. (2024). Modelling and measuring aerobic and anaerobic carbon loss from pig slurry storage. Abstract from EGU, Vienna, Austria. https://doi.org/10.5194/egusphere-egu24-22103

Kirstine Hessellund Nielsen, A., Ditlev Mørck Ottosen, L. & Vedel Wegener Kofoed, M. (2024). Development of membrane bioreactor for conversion of flue Gas-CO₂ to C1 and C2 biomolecules. Chemical Engineering Journal, 499, Article 155780. https://doi.org/10.1016/j.cej.2024.155780

Ambrose, H. W., Bambace, M. F., Marietou, A., Schwab, C., Kofoed, M. V. W. & Feilberg, A. (2024). Reuterin based biological treatment to mitigate methane emissions from pig slurry storage. Abstract from International symposium on gas and dust emissions from livestock (2024), Valencia, Spain.

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Kofoed, M. V. W. (2024). Chemical and biological surfactant treatments to mitigate methane emissions from manure pits in pig barns. Abstract from International symposium on gas and dust emissions from livestock (2024), Valencia, Spain.

Merrild, A. H., Johnsen, N. K., Zhang, M., Bogojevic, O., Ouyang, Y. & Guo, Z. (2024). De Novo Synthesis of Perdeuterated Phosphoinositide by Installing a Non-native Phospholipid Biopathway in E. coli. ACS Synthetic Biology, 13(10), 3344-3353. Article 39292964. https://doi.org/10.1021/acssynbio.4c00413

de la Cruz, M., Kunert, F., Taymaz-Nikerel, H., Sigala, J.-C., Gosset, G., Büchs, J. & Lara, A. R. (2024). Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered E. coli. Microorganisms, 12(1), Article 150. https://doi.org/10.3390/microorganisms12010150

Sieborg, M. U., Nielsen, A. K. H., Ottosen, L. D. M., Daasbjerg, K. & Kofoed, M. V. W. (2024). Bio-integrated carbon capture and utilization: at the interface between capture chemistry and archaeal CO₂ reduction. Nature Communications, 15(1), Article 7492. https://doi.org/10.1038/s41467-024-51700-3

Dalby, F. R., Hafner, S. D., Ambrose, H. W. & Adamsen, A. P. S. (2024). Pig manure degradation and carbon emission: Measuring and modeling combined aerobic–anaerobic transformations. Journal of Environmental Quality, 53(5), 589-603. https://doi.org/10.1002/jeq2.20603

Spirito, C. M., Lucas, T. N., Patz, S., Jeon, B. S., Werner, J. J., Trondsen, L. H., Guzman, J. J., Huson, D. H. & Angenent, L. T. (2024). Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. mSystems, 9(8). https://doi.org/10.1128/msystems.00416-24

Lambrecht, S., Biermann, M., Kara, S., Jopp, S. & Meyer, J. (2024). A novel characterization technique for hydrogels - in situ rheology-Raman spectroscopy for gelation and polymerization tracking. Materials Advances, 5(17), 6957-6966. https://doi.org/10.1039/d4ma00543k

Petermeier, P., Domínguez de María, P., Byström, E. & Kara, S. (2024). Intensified, Kilogram-Scaled, and Environment-Friendly: Chemoenzymatic Synthesis of Bio-Based Acylated Hydroxystyrenes. ACS Sustainable Chemistry and Engineering, 12(34), 12869-12878. https://doi.org/10.1021/acssuschemeng.4c03648

Anand, M., Panigrahi, S., Kofoed, M. V. W., Aghababaei, R. & Agarwala, S. (2024). Bioinspired poly(vinyl alcohol) films with tunable adhesion and self-healing for biodegradable electronics and beyond. Sustainable Materials and Technologies, 41, Article e01084. https://doi.org/10.1016/j.susmat.2024.e01084

Gaffey, J., Matinez, A. A., Andrade, T. A., Ambye-Jensen, M., Bishop, G., Collins, M. N. & Styles, D. (2024). Assessing the environmental footprint of alternative green biorefinery protein extraction techniques from grasses and legumes. Science of the Total Environment, 949, Article 175035. https://doi.org/10.1016/j.scitotenv.2024.175035

Vernet, G., Ma, Y., Serban, S., Basso, A., Zhang, N. & Kara, S. (2024). Metal Affinity Fusion Enzyme Immobilization: Batch Process Showcase for Cascading Alcohol Oxidation and Bayer-Villiger Oxidation in Microaqueous Media. ACS Sustainable Chemistry and Engineering, 12(29), 10820-10830. https://doi.org/10.1021/acssuschemeng.4c02236

Pham, T. H., Thomas, R., Schwab, C., Martinez, M. M. & Vidal, N. P. (2024). Unraveling the neutral and polar lipidome of Nordic brown macroalgae: A sustainable source of functional lipids. Food Chemistry, 459, Article 140415. https://doi.org/10.1016/j.foodchem.2024.140415

Gemeinhardt, K., Park, H., Won, J. I., Lee, J. H., Hwang, E. T., Angenent, L. T. & Jeon, B. S. (2024). Draft genome sequence of Magnusiomyces sp. LA-1 isolated from a C6-C8 acid-producing bioreactor. Microbiology Resource Announcements, 13(6). https://doi.org/10.1128/mra.00935-23

Lopez Fetzer, D. E., Andrade, T. A. & Ambye-Jensen, M. (2024). Xylose, Glucose and Fructose Extraction from Different Herbaceous Crops in a Green Biorefinery Demonstration Platform: a Comparative Study. Chemical Engineering Transactions, 109, 235-240. https://doi.org/10.3303/CET24109040

Sadegh, N., Uniacke, J., Feilberg, A. & Kofoed, M. V. W. (2024). Assessment of transient hydrogen sulfide peak emissions caused by biogas plant operation. Journal of Cleaner Production, 468, Article 142920. https://doi.org/10.1016/j.jclepro.2024.142920

Andrade, T. A., dos Passos, N. H. M., Fetzer, D. E. L. & Ambye-Jensen, M. (2024). Impact of Biomass Harvest-to-Processing Time on Protein Extraction in a Green Biorefinery Demonstration Plant. Chemical Engineering Transactions, 109, 109-114. https://doi.org/10.3303/CET24109019

T. Agler, M., B. Iten, L., A. Cotta, M., S. Dien, B. & Angenent, L. (2010). Toward Narrowing Endproduct Distribution in Nondefined Mixed Culture Anaerobic Conversion of Lignocellulosic Corn Fiber to n-Butyrate. In 2010 Cornell Engineering Research Conference

Mi, H. T. N., Kim, H., Lee, J. S., Eser, B. E. & Han, J. (2024). Flavonoids Biotransformation by Human Gut Bacterium Dorea sp. MRG-IFC3 Cell-Free Extract. Journal of Microbiology and Biotechnology, 34(6), 1270-1275. https://doi.org/10.4014/jmb.2403.03058

Larsen, C. K., Lindquist, P., Rosenkilde, M., Madsen, A. R., Haselmann, K., Glendorf, T., Olesen, K., Kodal, A. L. B. & Tørring, T. (2024). Using LanM Enzymes to Modify Glucagon-Like Peptides 1 and 2 in E. coli. ChemBioChem, 25(13), Article e202400201. https://doi.org/10.1002/cbic.202400201

Mathiasen, S. S., M. Kanta, J., Ploug Frydenberg, R., Lundsgaard, A., Guo, Z., M. Fritzen, A., Kiens, B., Wiking, L. & Kleinert, M. (2024). Novel methodology to enrich medium- and short-chain fatty acids in milk fat to improve metabolic health. Food & Function, 15(15), 7951-7960. https://doi.org/10.1039/D4FO00267A, https://doi.org/10.1039/d4fo00267a

Ambrose, H. W., Dalby, F. R., Feilberg, A. & Wegener Kofoed, M. V. (2024). Dose-dependent effects of sodium dodecyl sulfate and hydrogen peroxide treatments on methane emission from pig manure during storage. Journal of Environmental Management, 364, Article 121415. https://doi.org/10.1016/j.jenvman.2024.121415

Angenent, L. T., Casini, I., Schröder, U., Harnisch, F. & Molitor, B. (2024). Electrical-energy storage into chemical-energy carriers by combining or integrating electrochemistry and biology. Energy and Environmental Science, 17(11), 3682-3699. https://doi.org/10.1039/d3ee01091k

Lara, A. R., Kunert, F., Vandenbroucke, V., Taymaz-Nikerel, H., Martínez, L. M., Sigala, J. C., Delvigne, F., Gosset, G. & Büchs, J. (2024). Transport-controlled growth decoupling for self-induced protein expression with a glycerol-repressible genetic circuit. Biotechnology and Bioengineering, 121(6), 1789-1802. https://doi.org/10.1002/bit.28697

Bravo-Olín, J., Martínez-Carreón, S. A., Francisco-Solano, E., Lara, A. R. & Beltran-Vargas, N. E. (2024). Analysis of the role of perfusion, mechanical, and electrical stimulation in bioreactors for cardiac tissue engineering. Bioprocess and Biosystems Engineering, 47(6), 767-839. https://doi.org/10.1007/s00449-024-03004-5

Mathiasen, S. S., Ploug Frydenberg, R., Kleinert, M., Kiens, B., Guo, Z. & Wiking, L. (2024). Novel milk fat fractions for health and functionality obtained by short-path distillation. LWT, 201, Article 116255. https://doi.org/10.1016/j.lwt.2024.116255

Zhou, M., Taiwo, K., Wang, H., Ntihuga, J. N., Angenent, L. T. & Usack, J. G. (2024). Anaerobic digestion of process water from hydrothermal treatment processes: a review of inhibitors and detoxification approaches. Bioresources and Bioprocessing, 11(1), Article 47. https://doi.org/10.1186/s40643-024-00756-6

Palacios, P. A., Philips, J., Bentien, A. & Kofoed, M. V. W. (2024). Relevance of extracellular electron uptake mechanisms for electromethanogenesis applications. Biotechnology Advances, 73, 108369. Article 108369. https://doi.org/10.1016/j.biotechadv.2024.108369

Wang, F., Ouyang, Y., Zhou, P., Zhang, Y., Gao, R., Eser, B. E. & Guo, Z. (2024). NIR-accelerated cascade reaction for degradation of organophosphorus compounds by Au/PTE/ZIF-8: Cooperative effect and mechanism. Catalysis Science & Technology, 14(12), 3424-3435. https://doi.org/10.1039/D4CY00311J

Ortiz-Ardila, A. E., Celis, C., Usack, J. G., Angenent, L. T. & Labatut, R. A. (2024). Microaeration promotes volatile siloxanes conversion to methane and simpler monomeric products. Bioresource Technology, 400, Article 130673. https://doi.org/10.1016/j.biortech.2024.130673

Li, L., Liu, G. & Guo, Z. (2024). Oleogels Produced by Direct Methods Using as Gelator: Fatty Acids (Including 12-HSA), Fatty Alcohols, Ceramides, Lecithins, Sterols, Cellulose Fibers, and Fumed Silica. In C. Palla & F. Valoppi (Eds.), Advances in Oleogel Development, Characterization, and Nutritional Aspects (pp. 177–207). Springer. https://doi.org/10.1007/978-3-031-46831-5_8

Lara, A. R., Utrilla, J., Martínez, L. M., Krausch, N., Kaspersetz, L., Hidalgo, D., Cruz-Bournazou, N., Neubauer, P., Sigala, J. C., Gosset, G. & Büchs, J. (2024). Recombinant protein expression in proteome-reduced cells under aerobic and oxygen-limited regimes. Biotechnology and Bioengineering, 121(4), 1216-1230. https://doi.org/10.1002/bit.28645

Zhang, G., Li, Z., Guo, Z. & Charalampopoulos, D. (2024). Comparative extraction of melon seed (Cucumis melo L.) oil by conventional and enzymatic methods: physicochemical properties and oxidative stability. Journal of Agriculture and Food Research, 16, Article 101182. https://doi.org/10.1016/j.jafr.2024.101182

Kleikamp, H. B. C., Palacios, P. A., Kofoed, M. V. W., Papacharalampos, G., Bentien, A. & Nielsen, J. L. (2024). The Selenoproteome as a Dynamic Response Mechanism to Oxidative Stress in Hydrogenotrophic Methanogenic Communities. Environmental Science & Technology, 58(15), 6637-6646. https://doi.org/10.1021/acs.est.3c07725

Kofoed, M. V. W. (2019). In situ Methnation: Effect of Hydrogen on Acetate Production and Consumption Rates. Abstract from 16th IWA World Conference on Anaerobic Digestion, Delft, Netherlands.

Kofoed, M. V. W. (2021). Mass transfer-based selection of carrier material to enhance biogas upgrading in a methanogenic biotrickling filter. Abstract from Progress in Biogas V.

Kofoed, M. V. W. & Mørck Ottosen, L. D. (2023). Mikroorganismer omdanner menneskeskab CO₂. Aktuel Naturvidenskab, 2023(4), 13-16. https://aktuelnaturvidenskab.dk/find-artikel/nyeste-numre/4-2023/mikroorganismer-omdanner-menneskeskabt-co2

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2023). Exploring increased hydraulic retention time as a cost-efficient way of valorizing residual biogas potential. Bioresource Technology, 387, 129646. Article 129646. https://doi.org/10.1016/j.biortech.2023.129646

Schütterle, D. M., Hegner, R., Temovska, M., Ortiz-Ardila, A. E. & Angenent, L. T. (2024). Exclusive D-lactate-isomer production during a reactor-microbiome conversion of lactose-rich waste by controlling pH and temperature. Water Research, 250, Article 121045. https://doi.org/10.1016/j.watres.2023.121045

dos Passos, N. H. M. & Ambye-Jensen, M. (2024). Fractionation of proteins from alfalfa juice at demonstration scale: Effects of temperature and centrifugation strategies on removal of green protein and recovery of the soluble white protein fraction. Separation and Purification Technology, 330(Part C), Article 125461. https://doi.org/10.1016/j.seppur.2023.125461

Oliveira, J. M. S., Ottosen, L. D. M. & Kofoed, M. V. W. (2024). Continuous biomethanation of flue gas-carbon dioxide using bio-integrated carbon capture and utilization. Bioresource Technology, 399, Article 130506. https://doi.org/10.1016/j.biortech.2024.130506

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