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Department of Biological and Chemical Engineering

Publications by Molecular and Cellular Biotechnology

Are you looking for publications by Section of Molecular and Cellular Biotechnology? On this page you can find all the publications made by the Section of Molecular and Cellular Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Chanquia, S. N., Valotta, A., Gruber-Woelfler, H. & Kara, S. (2021). Photobiocatalysis in continuous flow. Frontiers in Catalysis, 1. https://doi.org/10.3389/fctls.2021.816538/abstract

Asare, P. T., Greppi, A., Pennacchia, A., Brenig, K., Geirnaert, A., Schwab, C., Stephan, R. & Lacroix, C. (2021). In vitro Modeling of Chicken Cecal Microbiota Ecology and Metabolism Using the PolyFermS Platform. Frontiers in Microbiology, 12, Article 780092. https://doi.org/10.3389/fmicb.2021.780092

Møller, A. H., Hammershøj, M., Hachow Motta dos Passos, N., Tanambell, H., Stødkilde-Jørgensen, L., Ambye-Jensen, M., Danielsen, M., Jensen, S. K. & Dalsgaard, T. K. (Ed.) (2021). Biorefinery of Green Biomass─How to Extract and Evaluate High Quality Leaf Protein for Food? Journal of Agricultural and Food Chemistry, 69(48), 14341-14357. https://doi.org/10.1021/acs.jafc.1c04289

Bittner, J. P., Zhang, N., Huang, L., Domínguez de María, P., Jakobtorweihen, S. & Kara, S. (2022). Impact of deep eutectic solvents (DESs) and individual DES components on alcohol dehydrogenase catalysis: Connecting experimental data and molecular dynamics simulations. Green Chemistry, 24(3), 1120-1131. https://doi.org/10.1039/D1GC04059F

Jurkas, V., Winkler, C. K., Poschenrieder, S., Oliveira, P., C. Pacheco, C., A. Ferreira, E., Weissensteiner, F., De Santis, P., Kara, S., Kourist, R., Tamagnini, P. & Kroutil, W. (2022). Expression and activity of heterologous hydroxyisocaproate dehydrogenases in Synechocystis sp. PCC 6803 ΔhoxYH. Engineering Microbiology, 2(1), Article 100008. https://doi.org/10.1016/j.engmic.2021.100008

Sieborg, M. U., Jensen, M. B., Jensen, B. & Kofoed, M. V. W. (2021). Effect of minimizing carrier irrigation on H₂ conversion in trickle bed reactors during ex situ biomethanation. Bioresource Technology Reports, 16, Article 100876. https://doi.org/10.1016/j.biteb.2021.100876

Chanquia, S. N., Vernet Armengol, G. & Kara, S. (2022). Photobioreactors for cultivation and synthesis: Specifications, challenges, and perspectives. Engineering in Life Sciences, 22(12), 712-724. https://doi.org/10.1002/elsc.202100070

Rodriguez-Dominguez, M. A., Bonefeld, B. E., Biller, P., Ambye-Jensen, M., Brix, H. & Arias, C. A. (2021). Production of high-value bio-resources from treatment wetland biomass. Abstract from WETPOL 2021: 9th International Symposium on Wetland Pollutants Dynamics and Control, Vienna, Austria.

Sonnenberg-Riethmacher, E., Miehe, M. & Riethmacher, D. (2021). Periostin in Allergy and Inflammation. Frontiers in Immunology, 12, Article 722170. https://doi.org/10.3389/fimmu.2021.722170

Dai, R., Liu, B., Zhang, Y., Pedersen, J. N., Zhang, X., Dong, M. & Guo, Z. (2021). Copper-based ternary hydrotalcite as a catalyst for hydroxylation of phenolic compounds. Journal of Environmental Chemical Engineering, 9(6), Article 106390. https://doi.org/10.1016/j.jece.2021.106390

Santner, P., Szabó, L. K., Chanquia, S. N., Høj Merrild, A., Hollmann, F., Kara, S. & Eser, B. E. (2021). Optimization and Engineering of Fatty Acid Photodecarboxylase for Substrate Specificity. ChemCatChem, 13(18), 4038-4046. https://doi.org/10.1002/cctc.202100840

Lærke, H. N., Stødkilde, L., Ambye-Jensen, M., Jensen, S. K., Sørensen, J. F., Nørgaard, J. V. & Knudsen, K. E. B. (2019). Extracts of green biomass as source of protein for pigs. EAAP scientific series, 138, 177-178. https://doi.org/10.3920/978-90-8686-891-9_28

Romio, C., Kofoed, M. V. W. & Møller, H. B. (2021). Digestate post-treatment strategies for additional biogas recovery: A review. Sustainability (Switzerland), 13(16), Article 9295. https://doi.org/10.3390/su13169295

Marietou, A. (2021). Sulfate reducing microorganisms in high temperature oil reservoirs. Advances in applied microbiology, 116, 99-131. https://doi.org/10.1016/bs.aambs.2021.03.004

Marietou, A., Kjeldsen, K. U., Glombitza, C. & Jørgensen, B. B. (2022). Response to substrate limitation by a marine sulfate-reducing bacterium. The ISME Journal, 16(1), 200–210. https://doi.org/10.1038/s41396-021-01061-2

Ahmmed, M. S., Jensen, M. B., Kofoed, M. V. W., Ottosen, L. D. M. & Batstone, D. J. (2021). Hydrodynamic analysis of full-scale in-situ biogas upgrading in manure digesters. Water Research, 203, Article 117528. https://doi.org/10.1016/j.watres.2021.117528

Zhang, X., Huang, Z., Wang, D., Zhang, Y., Eser, B. E., Gu, Z., Dai, R., Gao, R. & Guo, Z. (2022). A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials, 422, Article 126860. https://doi.org/10.1016/j.jhazmat.2021.126860

Hobisch, M. & Kara, S. (2021). Automated Feeding and Fermentation Phase Transitions for the Production of Unspecific Peroxygenase by Pichia pastoris. bioRxiv. https://doi.org/10.1101/2021.07.29.454275

Jørgensen, U., Kristensen, T., Jørgensen, J. R., Kongsted, A. G., De Notaris, C., Nielsen, C., Mortensen, E. Ø., Ambye-Jensen, M., Jensen, S. K., Stødkilde-Jørgensen, L., Dalsgaard, T. K., Møller, A. H., Grøn Sørensen, C., Asp, T., Lehmann Olsen, F. & Gylling, M. (2021). Green biorefining of grassland biomass. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 193 https://dcapub.au.dk/djfpublikation/index.asp?action=show&id=1480

Liang, N., Neužil-Bunešová, V., Tejnecký, V., Gänzle, M. & Schwab, C. (2021). 3-Hydroxypropionic acid contributes to the antibacterial activity of glycerol metabolism by the food microbe Limosilactobacillus reuteri. Food Microbiology, 98, Article 103720. https://doi.org/10.1016/j.fm.2020.103720

Rasmussen, T. S., Streidl, T., Hitch, T. C. A., Wortmann, E., Deptula, P., Kofoed, M. V. W., Riedel, T., Neumann-Schaal, M., Hansen, M., Nielsen, D. S., Clavel, T. & Vogensen, F. K. (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. International Journal of Systematic and Evolutionary Microbiology, 71(3), Article 004673. https://doi.org/10.1099/ijsem.0.004673

Andrade, T. A., Errico, M. & Christensen, K. V. (2020). Implementation of Biodiesel Production Process Using Enzyme-Catalyzed Routes. In A. Bonilla-Petriciolet & G. P. Rangaiah (Eds.), Process Systems Engineering for Biofuels Development (pp. 191-220). Wiley. https://doi.org/10.1002/9781119582694.ch8

Andrade, T. A., Hamerski, F., López Fetzer, D. E., Roda-Serrat, M. C., Corazza, M. L., Norddahl, B. & Errico, M. (2021). Ultrasound-assisted pressurized liquid extraction of anthocyanins from Aronia melanocarpa pomace. Separation and Purification Technology, 276, Article 119290. https://doi.org/10.1016/j.seppur.2021.119290

Jensen, M. B., Poulsen, S., Jensen, B., Feilberg, A. & Kofoed, M. V. W. (2021). Selecting carrier material for efficient biomethanation of industrial biogas-CO₂ in a trickle-bed reactor. Journal of CO2 Utilization, 51, Article 101611. https://doi.org/10.1016/j.jcou.2021.101611

Bittner, J. P., Huang, L., Zhang, N., Kara, S. & Jakobtorweihen, S. (2021). Comparison and Validation of Force Fields for Deep Eutectic Solvents in Combination with Water and Alcohol Dehydrogenase. Journal of Chemical Theory and Computation, 17(8), 5322-5341. https://doi.org/10.1021/acs.jctc.1c00274

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C. & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Stenderup, K. & Overby, S. S. (2021). Oral Group Examination Method to Evaluate Collaborative and Individual Learning. In J. Bennedsen, K. Edström, M. S. Gudjonsdottir, I. Sæmundsdóttir, N. Kuptasthien, J. Roslöf & A. Sripakagorn (Eds.), The 17th International CDIO Conference: Proceedings - Full Papers (pp. 630-644) http://www.cdio2021.chula.ac.th/download/CDIO2021_proceeding.pdf

Hobisch, M., Spasic, J., Malihan-Yap, L., Barone, G. D., Castiglione, K., Tamagnini, P., Kara, S. & Kourist, R. (2021). Internal Illumination to Overcome the Cell Density Limitation in the Scale-up of Whole-cell Photobiocatalysis. ChemSusChem, 14(15), 3219-3225. https://doi.org/10.1002/cssc.202100832

Zhang, N., Steininger, F., Meyer, L.-E., Koren, K. & Kara, S. (2021). Can Deep Eutectic Solvents Sustain Oxygen-Dependent Bioprocesses? Measurements of Oxygen Transfer Rates. ACS Sustainable Chemistry & Engineering, 9(25), 8347–8353. https://doi.org/10.1021/acssuschemeng.1c03547

Petermeier, P., Fortuna, C., M. Hübschmann, K., Nahuel Bidart Costoya, G., Tørring, T., Teze, D., Welner, D. H. & Kara, S. (2021). Exploring the in Vitro Operating Window of Glycosyltransferase PtUGT1 from Polygonum tinctorium for a Biocatalytic Route to Indigo Dye. ACS Sustainable Chemistry & Engineering, 9(25), 8497-8506. https://doi.org/10.1021/acssuschemeng.1c01536

Aryal, N., Ottosen, L. D. M., Kofoed, M. V. W. & Pant, D. (Eds.) (2021). Emerging Technologies and Biological Systems for Biogas Upgrading. (1 ed.) Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00019-2

Aryal, N., Ottosen, L. D. M., Bentien, A., Pant, D. & Kofoed, M. V. W. (2021). Bioelectrochemical systems for biogas upgrading and biomethane production. In N. Aryal, L. D. Mørck Ottosen, M. Vedel Wegener Kofoed & D. Pant (Eds.), Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 363-382). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00013-1

Zong, L., Zhang, Y., Shao, Z., Wang, Y., Guo, Z., Gao, R. & Eser, B. E. (2021). Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids. Catalysts, 11(6), Article 665. https://doi.org/10.3390/catal11060665

Jensen, M. B., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). H₂ gas-liquid mass transfer: A key element in biological Power-to-Gas methanation. Renewable & Sustainable Energy Reviews, 147, Article 111209. https://doi.org/10.1016/j.rser.2021.111209

Jensen, M. B., de Jonge, N., Dolriis, M. D., Kragelund, C., Holst Fischer, C., Eskesen, M., Noer, K. W., Møller, H. B., Ottosen, L. D. M., Nielsen, J. L. & Kofoed, M. V. W. (2021). Cellulolytic and Xylanolytic Microbial Communities Associated With Lignocellulose-Rich Wheat Straw Degradation in Anaerobic Digestion. Frontiers in Microbiology, 12, Article 645174. https://doi.org/10.3389/fmicb.2021.645174

Li, Z., Zhang, Y., Anankanbil, S. & Guo, Z. (2021). Applications of nanocellulosic products in food: Manufacturing processes, structural features and multifaceted functionalities. Trends in Food Science & Technology, 113, 277-300. https://doi.org/10.1016/j.tifs.2021.03.027

Stødkilde, L., Ambye-Jensen, M. & Jensen, S. K. (2021). Biorefined organic grass-clover protein concentrate for growing pigs: Effect on growth performance and meat fatty acid profile. Animal Feed Science and Technology, 276, Article 114943. https://doi.org/10.1016/j.anifeedsci.2021.114943

Kofoed, M. V. W., Jensen, M. B. & Ottosen, L. D. M. (2021). Biological upgrading of biogas through CO2 conversion to CH4. In Emerging Technologies and Biological Systems for Biogas Upgrading (pp. 321-362). Academic Press. https://doi.org/10.1016/B978-0-12-822808-1.00012-X

Meyer, L.-E., Eser, B. E. & Kara, S. (2021). Coupling light with biocatalysis for sustainable synthesis – very recent developments and future perspectives. Current Opinion in Green and Sustainable Chemistry, 31, Article 100496. https://doi.org/10.1016/j.cogsc.2021.100496

Röllig, R., Paul, C. E., Claeys-Bruno, M., Duquesne, K., Kara, S. & Alphand, V. (2021). Divorce in the two-component BVMO family: the single oxygenase for enantioselective chemo-enzymatic Baeyer–Villiger oxidations. Organic & Biomolecular Chemistry, 19(15), 3441-3450. https://doi.org/10.1039/D1OB00015B

Zhang, Y., Eser, B. E. & Guo, Z. (2021). A bi‐enzymatic cascade pathway towards optically pure FAHFAs. ChemBioChem, 22(12), 2146-2153. https://doi.org/10.1002/cbic.202100070

Zhang, Y., Eser, B. E., Kougioumtzoglou, G., Eser, Z., Poborsky, M., Kishino, S., Takeuchi, M., Ogawa, J., Kristensen, P. & Guo, Z. (2021). Effects of the engineering of a single binding pocket residue on specificity and regioselectivity of hydratases from Lactobacillus Acidophilus. Biochemical Engineering Journal, 171, Article 108006. https://doi.org/10.1016/j.bej.2021.108006

Lyu, J., Gao, R. & Guo, Z. (2021). Galactosyldiacylglycerols: From a Photosynthesis-Associated Apparatus to Structure-Defined In Vitro Assembling. Journal of Agricultural and Food Chemistry, 69(32), 8910–8928. https://doi.org/10.1021/acs.jafc.1c00204

Kara, S. & Rudroff, F. (2021). Perspectives: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 179-181). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (2021). Introduction: Enzyme Cascade Design and Modelling. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 1-6). Springer. https://doi.org/10.1007/978-3-030-65718-5

Petermeier, P. & Kara, S. (2021). Enzyme Cascade Reaction Engineering. In S. Kara & F. Rudroff (Eds.), Enzyme Cascade Design and Modelling (pp. 109-124). Springer. https://doi.org/10.1007/978-3-030-65718-5

Kara, S. & Rudroff, F. (Eds.) (2021). Enzyme Cascade Design and Modelling. Springer. https://doi.org/10.1007/978-3-030-65718-5

Dos Reis Vechi, N., Agnessens, L. M., Feilberg, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2021). In situ biomethanation: Inoculum origin influences acetate consumption rate during hydrogen addition. Bioresource Technology Reports, 14, Article 100656. https://doi.org/10.1016/j.biteb.2021.100656

Andrade, T. A., Al-Kabalawi, I. F., Errico, M. & Christensen, K. V. (2018). Evaluation of the optimal reaction conditions for the methanolysis and ethanolysis of castor oil catalyzed by immobilized enzymes. European Biomass Conference and Exhibition Proceedings, 2018(26thEUBCE), 1044-1050.

Andrade, T. A., Martín, M., Errico, M. & Christensen, K. V. (2019). Biodiesel production catalyzed by liquid and immobilized enzymes: Optimization and economic analysis. Chemical Engineering Research and Design, 141, 1-14. https://doi.org/10.1016/j.cherd.2018.10.026

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