Publications by Industrial Biotechnology

Are you looking for publications by Section of Industrial Biotechnology? On this page you can find all the publications made by the Section of Industrial Biotechnology - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

Sort by: Date | Author | Title

Lara, A. R., Galindo, J., Jaén, K. E., Juárez, M. & Sigala, J. C. (2020). Physiological response of escherichia coli W3110 and BL21 to the aerobic expression of vitreoscilla hemoglobin. Journal of Microbiology and Biotechnology, 30(10), 1592-1596. https://doi.org/10.4014/JMB.2004.04030

Oliveira, P. H., Mairhofer, J., Alves, P. M., Lara, A. R. & Kontoravdi, C. (2015). Advances in the development of biotherapeutics. BioMed Research International, 2015, Article 793876. https://doi.org/10.1155/2015/793876

Pablos, T. E., Mora, E. M., Le Borgne, S., Ramírez, O. T., Gosset, G. & Lara, A. R. (2011). Vitreoscilla hemoglobin expression in engineered Escherichia coli: Improved performance in high cell-density batch cultivations. Biotechnology Journal, 6(8), 993-1002. https://doi.org/10.1002/biot.201000405

Soto, R., Caspeta, L., Barrón, B., Gosset, G., Ramírez, O. T. & Lara, A. R. (2011). High cell-density cultivation in batch mode for plasmid DNA production by a metabolically engineered E. coli strain with minimized overflow metabolism. Biochemical Engineering Journal, 56(3), 165-171. https://doi.org/10.1016/j.bej.2011.06.003

Velazquez, D., Jaén, K. E., Sigala, J. C. & Lara, A. R. (2021). Minimized backbone and novel microaerobic promoters boost plasmid DNA production. Process Biochemistry, 106, 130-136. https://doi.org/10.1016/j.procbio.2021.04.013

Licona-Cassani, C., Lara, A. R., Cabrera-Valladares, N., Escalante, A., Hernández-Chávez, G., Martinez, A., Bolívar, F. & Gosset, G. (2014). Inactivation of pyruvate kinase or the phosphoenolpyruvate: Sugar phosphotransferase system increases shikimic and dehydroshikimic acid yields from glucose in bacillus subtilis. Journal of Molecular Microbiology and Biotechnology, 24(1), 37-45. https://doi.org/10.1159/000355264

Fragoso-Jiménez, J. C., Gutierrez-Rios, R. M., Flores, N., Martinez, A., Lara, A. R., Delvigne, F. & Gosset, G. (2022). Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories. Microbial Cell Factories, 21(1), Article 189. https://doi.org/10.1186/s12934-022-01909-y

Velazquez, D., Sigala, J. C., Martínez, L. M., Gaytán, P., Gosset, G. & Lara, A. R. (2022). Glucose transport engineering allows mimicking fed-batch performance in batch mode and selection of superior producer strains. Microbial Cell Factories, 21(1), Article 183. https://doi.org/10.1186/s12934-022-01906-1

Taymaz-Nikerel, H. & Lara, A. R. (2022). Vitreoscilla haemoglobin: A tool to reduce overflow metabolism. Microorganisms, 10(1), Article 43. https://doi.org/10.3390/microorganisms10010043

Krausch, N., Kaspersetz, L., Gaytán-Castro, R. D., Schermeyer, M. T., Lara, A. R., Gosset, G., Cruz Bournazou, M. N. & Neubauer, P. (2023). Model-Based Characterization of E. coli Strains with Impaired Glucose Uptake. Bioengineering, 10(7), Article 808. https://doi.org/10.3390/bioengineering10070808

Islas, F., Sabido, A., Sigala, J. C. & Lara, A. R. (2023). Design of microaerobically inducible miniR1 plasmids. mLife, 2(1), 101-104. https://doi.org/10.1002/mlf2.12058

Timmis, K., Karahan, Z. C., Ramos, J. L., Koren, O., Pérez-Cobas, A. E., Steward, K., de Lorenzo, V., Caselli, E., Douglas, M., Schwab, C., Rivero, V., Giraldo, R., Garmendia, J., Turner, R. J., Perlmutter, J., Borrero de Acuña, J. M., Nikel, P. I., Bonnet, J., Sessitsch, A. ... Häggblom, M. (2025). Microbes Saving Lives and Reducing Suffering. Microbial Biotechnology, 18(1), Article e70068. https://doi.org/10.1111/1751-7915.70068

Saad, A., Bai, L., Christensen, F. M. S., Luo, S., Bentien, A., Ashokkumar, M. & Wei, Z. (2025). Ultrasound-enhanced alkaline water splitting with fast bubble release and sustained Ni catalysts. Applied Catalysis B: Environmental, 370, Article 125152. https://doi.org/10.1016/j.apcatb.2025.125152

Sieborg, M. U., Engelbrecht, N., Singh, A., Schnürer, A., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Unraveling the effects of temperature on mass transfer and microbiology in thermophilic and extreme thermophilic trickle bed biomethanation reactors. Chemical Engineering Journal, 509, Article 161179. https://doi.org/10.1016/j.cej.2025.161179

Peng, S., Zhang, C., Wei, Y., Ouyang, Y., Han, J., Li, C., Dong, M. & Wang, J. (2025). High performance self-powered PbSe/WSe₂ p-n heterojunction photodetector for image sensing. Journal of Materials Science and Technology, 225, 125-132. https://doi.org/10.1016/j.jmst.2024.11.025

Claes, N., Foged, N., Norvin Vilhelmsen, T., Rumph Frederiksen, R., Kim, H. & Vest Christiansen, A. (2021). Data-driven hydrogeophysical and redox modelling. In 1st Conference on Hydrogeophysics: Contribution to Exploration and Management of Groundwater, Land-Use and Natural Hazards under a Changing Climate, Held at Near Surface Geoscience Conference and Exhibition 2021, NSG 2021 EAGE Publishing BV. https://doi.org/10.3997/2214-4609.202120078

Šáner, A., Ambye-Jensen, M., Jensen, S. K., Vorkamp, K., Ceccato, M. & Smith, A. M. (2025). Biochar produced from bio-refined herbaceous fibre residue for feed and technical purposes. Journal of Analytical and Applied Pyrolysis, 187, Article 107004. https://doi.org/10.1016/j.jaap.2025.107004

Struwe, H., Grimm, C., Dräger, G., Beutel, S., Alcalde, M., Kirschning, A. & Kara, S. (2025). Expanding the “Terpenome”: Applications of Unspecific Peroxygenases (UPOs) in Oxidations of Unnatural Terpenoids. ChemCatChem, 17(1), Article e202401414. https://doi.org/10.1002/cctc.202401414

Bittner, J. P., Zhang, N., Domínguez de María, P., Smirnova, I., Kara, S. & Jakobtorweihen, S. (2025). Molecular Understanding of Activity Changes of Alcohol Dehydrogenase in Deep Eutectic Solvents. Journal of Physical Chemistry B, 129(4), 1197-1213. https://doi.org/10.1021/acs.jpcb.4c06523

Christensen, B., Krüger, T. F., Hjorth, T. P., Buhl, E. H. & Sørensen, E. S. (2025). Milk osteopontin mediates zinc uptake in intestinal cells in the presence of phytic acid. International Dairy Journal, 161, Article 106113. https://doi.org/10.1016/j.idairyj.2024.106113

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: A new reaction of diiron enzymes (Angewandte Chemie - International Edition (2011) 50 DOI: 10.1002/anie.201101552). Angewandte Chemie - International Edition, 51(32). https://doi.org/10.1002/anie.201204831

Kim, H., Mi, H. T. N., Ahn, J. H., Lee, J. S., Eser, B. E., Choi, J. & Han, J. (2024). Glycoside-metabolizing oxidoreductase D3dgpA from human gut bacterium. Frontiers in Bioengineering and Biotechnology, 12, Article 1413854. https://doi.org/10.3389/fbioe.2024.1413854

Mi, H. T. N., Chaiyasarn, S., Eser, B. E., Tan, S. R. S., Burapan, S. & Han, J. (2022). Allyl Aryl Ether Cleavage by Blautia sp. MRG-PMF1 Cocorrinoid O-Demethylase. Microbiology Spectrum, 10(5). https://doi.org/10.1128/spectrum.03305-22

Eser, B. E., Das, D., Han, J., Jones, P. R. & Marsh, E. N. G. (2012). Erratum: Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: Investigation of kinetics and requirement for an external electron donor (Biochemistry (2011) 50:49 (10743-10750). DOI: 10.1021/bi2012417). Biochemistry, 51(28), 5703. https://doi.org/10.1021/bi300837j

Li, Z., Zhang, Y., Balle, T., Eser, B. E., Fang, Y. & Guo, Z. (2025). Preparation of Cello-Oligosaccharides by Precise-Controlled Enzymatic Depolymerization and Its Amphiphilic Functionalization for High-Oil Load Emulsification. Journal of Agricultural and Food Chemistry, 73(2), 1458–1467. https://doi.org/10.1021/acs.jafc.4c08886

Nazipi Bushi, S., Lund, M. B., Sandfeld, T., Nørskov, S. S., Fruergaard, S., Glasius, M., Bilde, T. & Schramm, A. (2025). A modified iChip for in situ cultivation of bacteria in arid environments. Applied and Environmental Microbiology, 91(2), Article e0132524. https://doi.org/10.1128/aem.01325-24

Elvan Gezer, M., Gravlund Fønss, K., Bambace, M. F., Marietou, A., Sandberg Overby, S., Sundekilde, U. & Schwab, C. (2025). Investigation on L-rhamnose metabolism of Loigolactobacillus coryniformis subsp. coryniformis DSM 20001 and its propionate-containing fermentates. Applied and Environmental Microbiology, 91(1), e0161324. Article e0161324. https://doi.org/10.1128/aem.01613-24

Palacios Jaramillo, P. A., Sieborg, M. U., Kuipers, S. B., Fruergaard, S. & Kofoed, M. V. W. (2025). Temperature tactics: Targeting acetate or methane production in autotrophic H2/CO2 conversion with mixed cultures. Biochemical Engineering Journal, 214, Article 109574. https://doi.org/10.1016/j.bej.2024.109574

Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D'Agostino, P. M., de Rond, T., Del Pup, E., Duncan, K. R., Gu, W. ... Medema, M. H. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53(D1), D678-D690. https://doi.org/10.1093/nar/gkae1115

Mekureyaw, M. F., Junker, A., Bai, L., Zhang, Y., Wei, Z. & Guo, Z. (2025). Laccase based per- and polyfluoroalkyl substances degradation: Status and future perspectives. Water Research, 271, Article 122888. https://doi.org/10.1016/j.watres.2024.122888

Benfeldt, F. V., Wang, F., Bredahl, N., Gao, R., Guo, Z. & Eser, B. E. (2024). A Highly Efficient Ferulic Acid Decarboxylase from Capronia coronata: Characterization and Biocatalytic Applications. (pp. xxx-xxx). ChemRxiv https://doi.org/10.26434/chemrxiv-2024-0npph-v2

Ouyang, Y., Jiang, Z., Ulstrup, S., Guo, Z., Wang, Z. & Dong, MD. (2024). Enhancing MoS2 Electronic Performance with Solid-State Lithium-Ion Electrolyte Contacts through Dielectric Screening. ACS Nano, 18(49), 33310-33318. https://doi.org/10.1021/acsnano.4c05973

Andrade, T. A., López Fetzer, D. E., Hachow Motta dos Passos, N. & Ambye-Jensen, M. (2025). Maceration and fractionation technologies in a demonstration-scale green biorefinery: Proteins, sugars, and lipids extraction and energy efficiency. Industrial Crops and Products, 223, Article 120142. https://doi.org/10.1016/j.indcrop.2024.120142

Gkantzou, E., Koulopoulou, T., Brass, H., Schönauer, D., Glieder, A. & Kara, S. (2024). Unspecific peroxygenase immobilization in 3D-printed microfluidics: towards tailor-made screening platforms. Catalysis Science and Technology, 14(22), 6496-6502. https://doi.org/10.1039/d4cy00869c

Kundu, D., Samanta, P., Bhowmick, S., Panigrahi, S., Dey, S., Nath, K., Rajak, R. C., Sherpa, K. C., Barathi, A., Kofoed, M. V. W., Kumar, S. & Ki Lin, C. S. (2024). Heterogeneous catalysts for sustainable biofuel production: A paradigm shift towards renewable energy. Biocatalysis and Agricultural Biotechnology, 62, Article 103432. https://doi.org/10.1016/j.bcab.2024.103432

Ng, K. S., Bambace, M. F., Andersen, E. B., Meyer, R. L. & Schwab, C. (2024). Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica. Microbiology Spectrum, 12(11), Article e0165824. https://doi.org/10.1128/spectrum.01658-24

Rohbohm, N., Lang, M., Erben, J., Gemeinhardt, K., Patel, N., Ilic, I. K., Hafenbradl, D., Rodrigo Quejigo, J. & Angenent, L. T. (2024). Performance Effects of Different Shutdown Methods on Three Electrode Materials for Electromethanogenesis. ChemElectroChem, 11(21), Article e202400372. https://doi.org/10.1002/celc.202400372

Chanquia, S. N., Bittner, J. P., Santner, P., Szabó, L. K., Madsen, J. S., Øhlenschlæger, M. L., Sarvari, A. G., Merrild, A. H., Fo̷nss, K. G., Jaron, D., Lutz, L., Kara, S. & Eser, B. E. (2024). Active-Site Mutagenesis of Fatty Acid Photodecarboxylase: Experimental and Computational Insight into Substrate Chain-Length Specificity. ACS Catalysis, 14(21), 15837-15849. https://doi.org/10.1021/acscatal.4c02970

Zhang, C., Peng, S., Ouyang, Y., Han, J., Li, C., Wei, Y., Jiang, Y., Dong, M. & Wang, J. (2024). Broadband self-powered MoS₂/PdSe₂/WSe₂ PSN heterojunction photodetector for high-performance optical imaging and communication. Optics Express, 32(22), 38136-38146. https://doi.org/10.1364/OE.539148

Nissen, S. H., Juul, L., Stødkilde, L., Bruhn, A., Ambye-Jensen, M. & Dalsgaard, T. K. (2024). Pilot-scale protein extraction of green seaweed (Ulva spp.) whole biomass and pulp – Investigating biochemical composition and protein digestibility in a rat trial. Food and Bioproducts Processing, 148, 353-364. https://doi.org/10.1016/j.fbp.2024.10.003

Ravenni, G., Thomsen, T. P., Smith, A. M., Ambye-Jensen, M., Rohde-Nielsen, K. T. & Henriksen, U. B. (2024). Integration of a drying and pyrolysis system in a green biorefinery: biochar product quality and impacts on the overall energy balance and climate footprint. Biomass Conversion and Biorefinery, 14(20), 25143-25159. https://doi.org/10.1007/s13399-023-04877-4

Svenningsen, T. (2024). Bridging the Gap: Understanding Triculamin Biosynthesis through In vitro Reconstitution and Genetic Analysis. Poster session presented at Microbial Secondary Metabolites
in Microbiomes , Helsingør, Denmark.

Svenningsen, T. (2024). Uncovering the biosynthesis of the non-canonical lasso peptide Triculamin through in vitro reconstitution. Poster session presented at 4th Synthetic Biology of Natural Products Conference, Cancun, Mexico.

Lambrecht, S., Gazizova, A., Kara, S., Meyer, J. & Jopp, S. (2024). Antimicrobial properties and biocompatibility of semi-synthetic carbohydrate-based ionic hydrogels. RSC Advances, 14(42), 30719-30731. https://doi.org/10.1039/d4ra05695g

Hougaard, R. F., Andersen, F. D. & Tørring, T. (2024). Scaffolding scientific inquiry: Adapting Tiny Earth for engaging high school students and their teachers in authentic research. Abstract from The Nordic conference on Science Education Research, NFSUN 2024, Reykjavik, Iceland.

Schwab, C. & Bambace, M. F. (2024). Traditional and novel applications of sourdough microbes in Northern Europe and the Baltic countries. In Sourdough Microbiota and Starter Cultures for Industry (pp. 93-129). Springer International Publishing. https://doi.org/10.1007/978-3-031-48604-3_4

Huang, Z., Qin, D., Abuduwupuer, X., Cao, L., Piao, Y., Shao, Z., Jiang, L., Guo, Z. & Gao, R. (2024). Regulate catalytic performance by engineering non-regular structure of extradiol dioxygenase: An entrance to bottom strategy. International Journal of Biological Macromolecules, 281(Part 1), 1-13. Article 136246. https://doi.org/10.1016/j.ijbiomac.2024.136246

Li, Q., Ruscheweyh, H. J., Østergaard, L. H., Libertella, M., Simonsen, K. S., Sunagawa, S., Scoma, A. & Schwab, C. (2024). Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. Microbiome, 12, Article 178. https://doi.org/10.1186/s40168-024-01863-4

Dalby, F. R., Hafner, S. D., Ambrose, H. W. & Adamsen, A. P. S. (2024). Modelling and measuring aerobic and anaerobic carbon loss from pig slurry storage. Abstract from EGU, Vienna, Austria. https://doi.org/10.5194/egusphere-egu24-22103

Kirstine Hessellund Nielsen, A., Ditlev Mørck Ottosen, L. & Vedel Wegener Kofoed, M. (2024). Development of membrane bioreactor for conversion of flue Gas-CO₂ to C1 and C2 biomolecules. Chemical Engineering Journal, 499, Article 155780. https://doi.org/10.1016/j.cej.2024.155780

Displaying results 51 to 100 out of 782

Back to the main page

Revised 16.01.2025

AU Engineering