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Department of Biological and Chemical Engineering

Publications by Bioprocess Engineering

Are you looking for publications by Section of Bioprocess Engineering? On this page you can find all the publications made by the Section of Bioprocess Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Pedersen, J. N., Zhou, Y., Guo, Z. & Pérez, B. (2019). Genetic and chemical approaches for surface charge engineering of enzymes and their applicability in biocatalysis: A review. Biotechnology and Bioengineering, 116(7), 1795-1812. https://doi.org/10.1002/bit.26979

İlyasoğlu, H. & Guo, Z. (2019). Water soluble chitosan-caffeic acid conjugates as a dual functional polymeric surfactant. Food Bioscience, 29(June), 118-125. https://doi.org/10.1016/j.fbio.2019.04.007

İlyasoğlu, H., Nadzieja, M. & Guo, Z. (2019). Caffeic acid grafted chitosan as a novel dual-functional stabilizer for food-grade emulsions and additive antioxidant property. Food Hydrocolloids, 95(October), 168-176. https://doi.org/10.1016/j.foodhyd.2019.04.043

Vos, B. J. P. R., Dubois, A. E. J., Rauber, M. M., Pfützner, W., Miehe, M., Bohle, B., Möbs, C. & Oude Elberink, J. N. G. (2019). Initiating yellow jacket venom immunotherapy with a 100-μg dose: A challenge? The Journal of Allergy and Clinical Immunology: In Practice, 7(4), 1332-1334.e4. https://doi.org/10.1016/j.jaip.2018.09.005

Yesiltas, B., Sørensen, A.-D., Garcia-Moreno, P. J., Anankanbil, S., Guo, Z. & Jacobsen, C. (2019). Modified phosphatidylcholine with different alkyl chain length and covalently attached caffeic acid affects the physical and oxidative stability of omega-3 delivery 70% oil-in-water emulsions. Food Chemistry, 289(August), 490-499. https://doi.org/10.1016/j.foodchem.2019.03.087

Huang, L., Tang, W., Röllig, R., S. Albers, F., W. Fraaije, M. & Kara, S. (2019). Convergent cascade catalyzed by monooxygenase – alcohol dehydrogenase fusion applied in organic media. ChemBioChem, 20(13), 1653-1658. https://doi.org/10.1002/cbic.201800814

Guo, Z. (2019). “Directed evolution” steers new lipid chemistry: my experience working with a Nobel Prize Laureate in chemistry. INFORM, 30(3), 20-24.

Engel, J., Siphamandla Mthetwa, K., Opperman, D. J. & Kara, S. (2019). Characterization of new Baeyer-Villiger monooxygenases for lactonizations in redox-neutral cascades. Molecular Catalysis , 468(May), 44-51. https://doi.org/10.1016/j.mcat.2019.02.006

Cheng, W., Anankanbil, S., Pérez, B., Pedersen, J. N., Liu, G. & Guo, Z. (2019). Aspartic-acid-based ampholytic amphiphiles: Synthesis, characterization, and pH-dependent properties at air/water and oil/water interfaces. Journal of Agricultural and Food Chemistry, 67(8), 2321-2330. https://doi.org/10.1021/acs.jafc.8b05122

Pavon, J. A., Eser, B., Huynh, M. T. & Fitzpatrick, P. F. (2010). Single turnover kinetics of tryptophan hydroxylase: Evidence for a new intermediate in the reaction of the aromatic amino acid hydroxylases. Biochemistry, 49(35), 7563-7571.

Eser, B. E., Yazgan, Ü. C., Gürses, S. A. & Aydın, M. (2016). Diabetes Mellitus ve Epigenetik Mekanizmalar. Dicle Medical Journal/Dicle Tip Dergisi, 43(2).

Ak, S., Gürses, S. A. & Eser, B. E. (2016). Staphylococcus aureus'un makrofajlar tarafından fagositozu üzerine sigara dumanı ekstraktının etkisi. Mikrobiyoloji bulteni, 50(2), 205-214. https://doi.org/10.5578/mb.25278

Demirörs, A. F., Eser, B. E. & Dag, O. (2005). Liquid crystalline mesophases of pluronics (L64, P65, and P123) and transition metal nitrate salts ([M(H2O)6](NO3)2). Langmuir, 21(9), 4156-62. https://doi.org/10.1021/la047136l

Eser, B. E., Barr, E. W., Frantom, P. A., Saleh, L., Bollinger, J. M., Krebs, C. & Fitzpatrick, P. F. (2007). Direct spectroscopic evidence for a high-spin Fe(IV) intermediate in tyrosine hydroxylase. Journal of the American Chemical Society, 129(37), 11334-5. https://doi.org/10.1021/ja074446s

Chow, M. S., Eser, B. E., Wilson, S. A., Hodgson, K. O., Hedman, B., Fitzpatrick, P. F. & Solomon, E. I. (2009). Spectroscopy and kinetics of wild-type and mutant tyrosine hydroxylase: mechanistic insight into O2 activation. Journal of the American Chemical Society, 131(22), 7685-98. https://doi.org/10.1021/ja810080c

Eser, B. E. & Fitzpatrick, P. F. (2010). Measurement of intrinsic rate constants in the tyrosine hydroxylase reaction. Biochemistry, 49(3), 645-52. https://doi.org/10.1021/bi901874e

Eser, B. E., Das, D., Han, J., Jones, P. R. & Marsh, E. N. G. (2011). Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: investigation of kinetics and requirement for an external electron donor. Biochemistry, 50(49), 10743-50. https://doi.org/10.1021/bi2012417

Krzyaniak, M. D., Eser, B. E., Ellis, H. R., Fitzpatrick, P. F. & McCracken, J. (2013). Pulsed EPR study of amino acid and tetrahydropterin binding in a tyrosine hydroxylase nitric oxide complex: evidence for substrate rearrangements in the formation of the oxygen-reactive complex. Biochemistry, 52(47), 8430-41. https://doi.org/10.1021/bi4010914

McCracken, J., Eser, B. E., Mannikko, D., Krzyaniak, M. D. & Fitzpatrick, P. F. (2015). HYSCORE Analysis of the Effects of Substrates on Coordination of Water to the Active Site Iron in Tyrosine Hydroxylase. Biochemistry, 54(24), 3759-71. https://doi.org/10.1021/acs.biochem.5b00363

Zhang, X., Eser, B. E., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). Structural Basis for Iron-Mediated Sulfur Transfer in Archael and Yeast Thiazole Synthases. Biochemistry, 55(12), 1826-1838. https://doi.org/10.1021/acs.biochem.6b00030

Eser, B. E., Zhang, X., Chanani, P. K., Begley, T. P. & Ealick, S. E. (2016). From Suicide Enzyme to Catalyst: The Iron-Dependent Sulfide Transfer in Methanococcus jannaschii Thiamin Thiazole Biosynthesis. Journal of the American Chemical Society, 138(11), 3639-3642. https://doi.org/10.1021/jacs.6b00445

Das, D., Eser, B. E., Han, J., Sciore, A. & Marsh, E. N. G. (2011). Oxygen-independent decarbonylation of aldehydes by cyanobacterial aldehyde decarbonylase: a new reaction of diiron enzymes. Angewandte Chemie International Edition, 50(31), 7148-52. https://doi.org/10.1002/anie.201101552

Ambye-Jensen, M., Balzarotti, R., Thomsen, S. T., Fonseca, C. & Kádár, Z. (2018). Combined ensiling and hydrothermal processing as efficient pretreatment of sugarcane bagasse for 2G bioethanol production. Biotechnology for Biofuels, 11(1), Article 336. https://doi.org/10.1186/s13068-018-1338-y

Zhang, H., Lopez, P. C., Holland, C., Lunde, A., Ambye-Jensen, M., Felby, C. & Thomsen, S. T. (2018). The multi-feedstock biorefinery – Assessing the compatibility of alternative feedstocks in a 2G wheat straw biorefinery process. Global change biology. Bioenergy, 10(12), 946-959. https://doi.org/10.1111/gcbb.12557

He, Y., Wang, X., Guo, Z., Jiang, Y. & Chen, F. (2019). Enzymatic ethanolysis subjected to Schizochytrium biomass: Sequential processing for DHA enrichment and biodiesel production. Energy Conversion and Management, 184, 159-171. https://doi.org/10.1016/j.enconman.2019.01.051

Zhou, Y., Pérez, B., Hao, W., Lv, J., Gao, R. & Guo, Z. (2019). The additive mutational effects from surface charge engineering: A compromise between enzyme activity, thermostability and ionic liquid tolerance. Biochemical Engineering Journal, 148, 195-204. https://doi.org/10.1016/j.bej.2018.07.020

Vanoppen, M., van Vooren, T., Gutierrez, L., Roman, M., Coué, LJ.-P., Verbeken, K., Philips, J. & Verliefde, A. R. D. (2019). Secondary treated domestic wastewater in reverse electrodialysis: what is the best pre-treatment? Separation and Purification Technology, 218, 25-42. https://doi.org/10.1016/j.seppur.2018.12.057

Scoma, A., Heyer, R., Rifai, R., Dandyk, C., Marshall, I., Kerckhof, F. M., Marietou, A., Boshker, H. T. S., Meysman, F. J. R., Malmos, K. G., Vosegaard, T., Vermeir, P., Banat, I. M., Benndorf, D. & Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME Journal, 13(4), 1004-1018. https://doi.org/10.1038/s41396-018-0324-5

pesci, L., Kara, S. & Liese, A. (2018). Enzymkinetik. In K.-E. Jaeger, A. Liese & C. Syldatk (Eds.), Einführung in die Enzymtechnologie (pp. 53-75). Springer. https://doi.org/10.1007/978-3-662-57619-9_4

Kara, S. & von Langermann, J. (2018). Prinzipien der angewandten Biokatalyse. In K.-E. Jaeger, A. Liese & C. Syldatk (Eds.), Einführung in die Enzymtechnologie (pp. 225-242). Springer. https://doi.org/10.1007/978-3-662-57619-9_13

Zhou, Y., Jones, N. C., Pedersen, J. N., Perez, B., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Kristensen, P., Gao, R. & Guo, Z. (2019). Insight into the structure and activity of surface-engineered lipase biofluids. ChemBioChem, 20(10), 1266-1272. https://doi.org/10.1002/cbic.201800819

Santamaria-Fernandez, M., Ambye-Jensen, M., Damborg, V. K. & Lübeck, M. (2019). Demonstration-scale protein recovery by lactic acid fermentation from grass clover – a single case of the production of protein concentrate and press cake silage for animal feeding trials. Biofuels, Bioproducts and Biorefining, 13(3), 502-513. https://doi.org/10.1002/bbb.1957

Philips, J., Monballyu, E., Georg, S., De Paepe, K., Prévoteau, A., Rabaey, K. & Arends, J. B. A. (2019). An Acetobacterium strain isolated with metallic iron as electron donor enhances iron corrosion by a similar mechanism as Sporomusa sphaeroides. FEMS Microbiology Ecology, 95(2), Article fiy222. https://doi.org/10.1093/femsec/fiy222

Jensen, D., Kofoed, M. V. W., Ottosen, L. D. M. & Rotaru, A.-E. (2018). Producing PHBs from renewable sources: Using surplus electricity to produce bioplastics from CO2. Poster session presented at
DMS ANNUAL CONGRESS 2018, Copenhagen, Denmark.

Yesiltas, B., Garcia-Moreno, P., Sørensen, A.-D., Anankanbil, S., Guo, Z. & Jacobsen, C. (2018). Effects of modified DATEMs with different alkyl chain lengths on improving oxidative and physical stability of 70% fish oil-in-water emulsions. Journal of Agricultural and Food Chemistry, 66(47), 12512-12520. https://doi.org/10.1021/acs.jafc.8b04091

Anankanbil, S., Pérez, B., Cheng, W., Ambrósio, G. & Guo, Z. (2019). Caffeoyl maleic fatty alcohol monoesters: Synthesis, characterization and antioxidant assessment. Journal of Colloid and Interface Science, 536, 399-407. https://doi.org/10.1016/j.jcis.2018.10.078

Hollmann, F., Kara, S., Opperman, D. J. & Wang, Y. (2018). Biocatalytic synthesis of lactones and lactams. Chemistry - An Asian Journal, 13(23), 3601-3610. https://doi.org/10.1002/asia.201801180

Hümmer, M., Kara, S., Liese, A., Huth, I., Schrader, J. & Holtmann, D. (2018). Synthesis of (-)-menthol fatty acid esters in and from (-)-menthol and fatty acids – novel concept for lipase catalyzed esterification based on eutectic solvents. Molecular Catalysis , 458(A), 67-72. https://doi.org/10.1016/j.mcat.2018.08.003

Huang, L., Sayoga, G. V., Hollmann, F. & Kara, S. (2018). Horse liver alcohol dehydrogenase-catalyzed oxidative lactamization of amino alcohols. A C S Catalysis, 8(9), 8680-8684. https://doi.org/10.1021/acscatal.8b02355

ILYASOGLU, H., Anankanbil, S., Nadzieja, M. & Guo, Z. (2018). Lipophilization of chitin as novel polymeric stabilizer for improved oil-in-water emulsions. Colloid and Polymer Science, 296(11), 1841-1848. https://doi.org/10.1007/s00396-018-4410-z

Anankanbil, S., Mose, J. H., Pérez, B., Cheng, W., Pedersen, J. N. & Guo, Z. (2019). Mapping the location of DATEM in multi-phase systems: Synthesis and characterization of spin-label probe analogues. Food Chemistry, 275, 474-479. https://doi.org/10.1016/j.foodchem.2018.09.140

Yong-Jin, H., Lin, G., Rao, X., Chen, L., Huang, J., Wang, M., Guo, Z. & Chen, B. (2018). Microalga Isochrysis galbana in feed for Trachinotus ovatus: effect on growth performance and fatty acid composition of fish fillet and liver. Aquaculture International, 26(5), 1261-1280. https://doi.org/10.1007/s10499-018-0282-y

Philips, J., Van den Driessche, N., Prevotaeu, A., Gralnick, J. A., Arends, J. BA. & Rabaey, K. (2018). A new Shewanella isolate enhances corrosion by using metallic iron as electron donor with fumarate as electron acceptor. Applied and Environmental Microbiology, 84(20), Article e01154-18. https://doi.org/10.1128/AEM.01154-18

Dijk, J. A., Breugelmans, P., Philips, J., Haest, P. J., Smolders, E. & Springael, D. (2008). Catalyzed reporter deposition-fluorescent in situ hybridization (CARD-FISH) detection of Dehalococcoides. Journal of Microbiological Methods, 73(2), 142-147. https://doi.org/10.1016/j.mimet.2008.01.012

Haest, P. J., Philips, J., Springael, D. & Smolders, E. (2011). The reactive transport of trichloroethene is influenced by residence time and microbial numbers. Journal of Contaminant Hydrology, 119(1-4), 89-98. https://doi.org/10.1016/j.jconhyd.2010.09.011

Philips, J., Springael, D. & Smolders, E. (2011). A three-layer diffusion-cell to examine bioenhanced dissolution of chloroethene dense non-aqueous phase liquid. Chemosphere, 83(7), 991-996. https://doi.org/10.1016/j.chemosphere.2011.02.012

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Distribution of a dechlorinating community in relation to the distance from a trichloroethene dense non-aqueous phase liquid in a model aquifer. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Philips, J., Van Muylder, R., Springael, D. & Smolders, E. (2013). Electron donor limitations reduce microbial enhanced trichloroethene DNAPL dissolution: a flux-based analysis using three-layer diffusion-cells. Chemosphere, 91(1), 7-13. https://doi.org/10.1016/j.chemosphere.2012.11.016

Philips, J., Haest, P. J., Springael, D. & Smolders, E. (2013). Inhibition of Geobacter Dechlorinators at Elevated Trichloroethene Concentrations Is Explained by a Reduced Activity Rather than by an Enhanced Cell Decay. Environmental Science & Technology, 47(3), 1510-1517. https://doi.org/10.1021/es303390q

Paul, L., Herrmann, S., Koch, C. B., Philips, J. & Smolders, E. (2013). Inhibition of microbial trichloroethylene dechorination by Fe (III) reduction depends on Fe mineralogy: A batch study using the bioaugmentation culture KB-1. Water Research, 47(7), 2543-2554. https://doi.org/10.1016/j.watres.2013.02.029

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