Publications by Bioprocess Engineering

Are you looking for publications by Section of Bioprocess Engineering? On this page you can find all the publications made by the Section of Bioprocess Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Irla, M., Brito, L. F., Langlo, J., Wohlers, C., Benninghaus, L., Heid, C., Wendisch, V. F., Schmid, J. & Brautaset, T. (2026). Development of a markerless tool for targeted chromosome modification in the thermophilic and methylotrophic bacterium Bacillus methanolicus. Microbial Cell Factories, 25(1), Article 10. https://doi.org/10.1186/s12934-025-02880-0

Kromm, F. E. H., Møller, S. L. B., Jensen, A. S., Wørmer, G. J., Rasmussen, M. H., B. Svenningsen, E., Tørring, T. & Poulsen, T. B. (2026). Modular Total Synthesis of Lasalocid Acid A through Direct C(sp³)–C(sp³) Attached Ring Construction. Journal of the American Chemical Society, 148(1), 249-257. https://doi.org/10.1021/jacs.5c11543

Fang, F., Franco, M., Gallego-Lobillo, P., Spotti, M. J., Bechtner, J. D. & Martinez, M. M. (2026). Interactive effects of free and cell wall-bound polyphenols on starch pasting, retrogradation, gelation and digestibility. Food Hydrocolloids, 175, Article 112457. https://doi.org/10.1016/j.foodhyd.2026.112457

Franco, M., Lopez-Rodulfo, I. M., Bianchi, F., Gomez, M. & Martinez, M. M. (2026). Harnessing apple pomace as a bioactive bread ingredient: Influence of exogenous soluble polysaccharides on water dynamics and structure-dependent polyphenol stability. Food Hydrocolloids, 175, Article 112444. https://doi.org/10.1016/j.foodhyd.2026.112444

Ma, Y. & Eser, B. E. (2025). Bridging Disciplines in Enzyme Kinetics: Understanding Steady-State, Transient-State and Performance Parameters. Catalysts, 15(12), Article 1139. https://doi.org/10.3390/catal15121139

Mota, L. A., Calegari, R. P., Pinto, A. U., Sica, P., Gomes, M. P., Baptista, A. S. & Arthur, V. (2026). Biofortification of Yeast with Selenomethionine in Corn Hydrolysate: Influence of Different Metabolic Pathways. Biological Trace Element Research, 204(6), 4251-4268. https://doi.org/10.1007/s12011-025-04963-w

Lucas, T. N., Biehain, U., Gautam, A., Gemeinhardt, K., Lass, T., Konzalla, S., Ley, R. E., Angenent, L. T. & Huson, D. H. (2026). MMonitor for real-time monitoring of microbial communities using long reads. Cell Reports Methods, 6(1), Article 101266. https://doi.org/10.1016/j.crmeth.2025.101266

Vaupel, S., Meyer, L. E., Domínguez de María, P. & Kara, S. (2025). Molar-Scale Phenolic Acid Decarboxylation Using Thermostable Biocatalysts and Enzyme-Compatible Deep Eutectic Solvents. ChemSusChem, 18(24), Article e202501755. https://doi.org/10.1002/cssc.202501755

Ko, G., Park, H., Lee, C. Y., Angenent, L. T., Jeon, B. S. & Hwang, E. T. (2026). Biomineralization-driven one-pot separation and stabilization of extracellular lipases bypassing purification. International Journal of Biological Macromolecules, 337(Part 2), Article 149554. https://doi.org/10.1016/j.ijbiomac.2025.149554

Behan, J. A., Barrière, F., Geneste, F., Bodin, C., Vautier, A., Guihéneuf, S., Colavita, P. E., Philips, J., Reiner, J. E., Tschulkow, M. & Nimmegeers, P. (2025). Challenges and opportunities for the production of sustainable active species for redox flow batteries in bioelectrochemical systems. Chemical Engineering Journal, 524, Article 169515. https://doi.org/10.1016/j.cej.2025.169515

Palacios Jaramillo, P. A. & Kofoed, M. V. W. (2026). Performance of mesophilic and thermophilic acetogenic strains for CO2 -to-acetate production. Biomass and Bioenergy, 207, Article 108599. https://doi.org/10.1016/j.biombioe.2025.108599

Calegari, R. P., Schutgens, M., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Selenium and Cysteine Synergy: Enhancing methane production rates in hyperthermophilic methanogens. 1604. Abstract from FEMS MICRO 2025, Milan, Italy.

Ahmmed, M. S., Otten, C. K., Kofoed, M. V. W. & Batstone, D. J. (2025). Impact of rheology on mass transfer and bubble diameter in wastewater treatment systems. Chemical Engineering Research and Design, 224, 523-532. https://doi.org/10.1016/j.cherd.2025.11.039

Ballegaard, A. S. R., Jensen, B. K., Aagaard, J. B., Miehe, M. & Spillner, E. (2026). Molecular targeting in the context of insect venom allergy: targets and perspectives. Allergo Journal International, 35(1), 8-14. https://doi.org/10.1007/s40629-025-00355-7

Falkeborg, M., Berton-Carabin, C. C. & Cheong, L. Z. (2016). Ionic Liquids in the Synthesis of Antioxidant Targeted Compounds. In Ionic Liquids in Lipid Processing and Analysis: Opportunities and Challenges (pp. 317-346). Elsevier Inc.. https://doi.org/10.1016/B978-1-63067-047-4.00010-6

Falkeborg, M. F., Roda-Serrat, M. C., Burnæs, K. L. & Nielsen, A. L. D. (2018). Stabilising phycocyanin by anionic micelles. Food Chemistry, 239, 771-780. https://doi.org/10.1016/j.foodchem.2017.07.007

Wijesooriya, M. M., Calegari, R. P., Kofoed, M. V. W. & Ottosen, L. D. M. (2025). Exploring increased concentration of capture agent and methanogenic activity in Bio-Integrated Carbon Capture and Utilization (BICCU) reactors. Abstract ID: 4039 / Poster Number: 372.17P (770=. Poster session presented at FEMS MICRO 2025, Milan, Italy.

Wijesooriya, M. M., Kofoed, M. V. W., Ottosen, L. D. M., Nielsen, J. L. & Eskildsen, M. (2025). Exploring methanogen-carbon capture agent interactions in bio-integrated carbon capture and utilization (BICCU) into biomethane. O1A-002 (29). Abstract from The 5th International Conference on Biogas Microbiology, Galway, Ireland.

Nielsen, A. K. H., Ottosen, L. D. M. & Kofoed, M. V. W. (2025). Production of acetate from flue gas-CO₂ by membrane-based bio-integrated carbon capture and utilization. Chemical Engineering Journal, 526, Article 170633. https://doi.org/10.1016/j.cej.2025.170633

Ma, Y., Smith, G., Haaijer-Vroomen, S. S. C. M., Olde Olthof, S., Welte, C. U. & Glodowska, M. (2025). Hexavalent Chromium Inhibits Nitrate-Dependent Anaerobic Methane Oxidation While Enriching Denitrifiers: Insights into Microbial Interactions for Simultaneous Methane, Nitrate, and Chromate Removal. ACS ES&T Water, 5(11), 6790-6800. https://doi.org/10.1021/acsestwater.5c00752

Rodulfo, I. M. L. (2025). In vitro bioaccessibility and metabolic effects of polyphenols from different apple matrices in the upper gastrointestinal tract. [PhD dissertation, Aarhus University].

Jensen, R. K., Miehe, M., Gandini, R., Jørgensen, M. H., Spillner, E. & Andersen, G. R. (2026). Cryo-EM Structure of FcεRI Bound IgE Reveals Multiple Defined Conformations of the Fab-Fc Hinge. Allergy: European Journal of Allergy and Clinical Immunology, 81(6), 2047-2058. https://doi.org/10.1111/all.70132

Brito, L. F., Luciano, D., Irla, M., Virant, D., Courtade, G. & Brautaset, T. (2025). Identification of MscS as a Key L-Glutamate Exporter in Bacillus methanolicus. Microbial Biotechnology, 18(10), Article e70252. https://doi.org/10.1111/1751-7915.70252

Ng, K. S., Busche, T., Rückert-Reed, C., Bambace, M. F., Sundekilde, U. K. & Schwab, C. (2025). Structural properties of short-chain carboxylic acids and alcohols relate to the molecular and physiological response of Salmonella enterica in an acidic environment. Applied Microbiology and Biotechnology, 109(1), Article 240. https://doi.org/10.1007/s00253-025-13608-w

Cid Gomes, L., da Rosa Garcia, A., Raeisi, F., de Oliveira Barbosa, L. C., Wasalabandara, D., Panakkal Manuel, A., Skovborg, N. L., Hostrup, E. T., Wojtasz, J., Gunnarsson, M., Ambye-Jensen, M. & Bernin, D. (2025). Green Biorefinery Side Stream as a Source of Chlorophyll Pigments, Lignin, and Cellulose for Textile Fibers. ACS Sustainable Chemistry and Engineering, 13(40), 16946-16957. https://doi.org/10.1021/acssuschemeng.5c06653

Zhang, N., Schwarz, E., Bittner, J. P., Jakobtorweihen, S., Smirnova, I., de María, P. D. & Kara, S. (2025). Rational Design of Hydrophilic Deep Eutectic Solvents to Outperform Oxidoreductase Activity in Aqueous Media. ChemCatChem, 17(19), Article e00986. https://doi.org/10.1002/cctc.202500986

Brito, L. F., Friis, M. K., Zhu, H., Brautaset, T., Wendisch, V. F. & Irla, M. K. (2025). Tools and Strategies for Engineering Bacillus methanolicus: A Versatile Thermophilic Platform for Sustainable Bioproduction from Methanol and Alternative Feedstocks. Synthetic Biology and Engineering, 3(4). https://doi.org/10.70322/sbe.2025.10016

Sommer, S. G., Christensen, M. L., Norddahl, B., Ambye-Jensen, M. & Roda-Serrat, M. C. (2025). Preface. In Bioprocesses: A Comprehensive Guide to Sustainable Resources in the Non-Fossil Era (pp. xi-xii). Cambridge University Press. https://doi.org/10.1017/9781108950831.001

Jeon, B. S., Kim, E. J., Seo, H., Kim, H., Shin, S., Schlaiß, C., Angenent, L. T., Kim, K. J. & Sang, B. I. (2025). Molecular Chain Elongation Mechanism for n-Caproate Biosynthesis by Megasphaera Hexanoica. Advanced Science, 12(44), Article e06069. https://doi.org/10.1002/advs.202506069

Schwab, C., Lang, H., Stegmüller, S., Hosek, J., Marietou, A., Huertas-Díaz, L., Li, Q., Krings, A. P. S., Zander, A., Kræmer Sundekilde, U. & Richling, E. (2025). Microbial Transformation of Dietary Glycerol Contributes to Intestinal Acrolein Formation and Urinary Excretion. Molecular Nutrition and Food Research, 69(24), Article e70289. https://doi.org/10.1002/mnfr.70289

Ambrose, H. W., Dalby, F. R., Lashkari, S. & Børsting, C. F. (2025). Can diet influence methane emissions from the manure of dairy cows?. Poster session presented at RAMIRAN 2025, Wageningen, Netherlands.

Dalby, F. R., Ambrose, H. W., Lashkari, S. & Børsting, C. F. (2025). Methane emission and organic matter degradation dynamics in cattle manure: Effects of diet and storage temperature. Poster session presented at RAMIRAN 2025, Wageningen, Netherlands.

Huertas-Díaz, L., Gezer, M. E., Marietou, A., Hosek, J., Thams, L., Dalgaard, L. B., Hansen, M. & Schwab, C. (2025). Megasphaera contributes to lactate-driven valerate production in the human gut. Microbiome, 13(1), Article 210. https://doi.org/10.1186/s40168-025-02207-6

Lara, A. R., Andersen, M. B., Madsen, A. A. V., Fønss, K. G., Irla, M., Taymaz-Nikerel, H., Martínez, L. M., Dicke, M. D., Mann, M., Magnus, J. B. & Gosset, G. (2025). Biomanufacturing Potential of Streamlined Cells. Biotechnology and Bioengineering, 122(12), 3309-3318. https://doi.org/10.1002/bit.70070

Fetzer, D. E. L., Coelho, J. A. P. & Ambye-Jensen, M. (2025). Extraction of lipids with supercritical CO₂and downstream processing from grass-clover products from a green biorefinery demonstration platform. Journal of CO2 Utilization, 101, Article 103198. https://doi.org/10.1016/j.jcou.2025.103198

Boffe, P. M., Calegari, R. P., de Souza, D. C. R., da Conceição, P. S., Szymczak, D. A. & Tessaro, D. (2017). Potencial fitoextrator da espécie vegetal Helianthus annuus L. Em solo contaminado por chumbo. Espacios, 38(9), 8.

Mota, L. A., Calegari, R. P., Pinto, A. U., Sica, P., Amorim, D. J., Azevedo, R. A., Gaziola, S. A., Douradinho, R. S., Baptista, A. S. & Arthur, V. (2025). Selenium-biofortified spent yeast cultivated in corn hydrolysate: antioxidant response and biomass production under aerobic and anaerobic conditions. International Microbiology, 28(8), 2829-2844. https://doi.org/10.1007/s10123-025-00722-y

Sica, P., Prado, L. M. L. M., Granja, P., de Carvalho, E. M., Mattos, E. D. C., Calegari, R. P., Silverio, M., Martins, B. C. & Baptista, A. S. (2021). Effects of energy cane (Saccharum spp.) juice on corn ethanol (Zea mays) fermentation efficiency: Integration towards a more sustainable production. Fermentation , 7(1), Article 30. https://doi.org/10.3390/fermentation7010030

Amorim Mota, L., Maria da Silva, A. P., Alberto da Silva, E., Maria Ferreira Lima Leite, G., Perez Calegari, R. & Sampaio Baptista, A. (2022). Ability of the Saccharomyces cerevisiae Y904 to tolerate and adapt to high concentrations of selenium. Brazilian Journal of Biosystems Engineering, 16, Article 1066. https://doi.org/10.18011/bioeng.2022.v16.1066

Stødkilde, L., Ingerslev, A. K., Lærke, H. N., Jørgensen, E. T., Ambye-Jensen, M. & Jensen, S. K. (2025). Evaluating protein digestibility of biorefined forage crops in growing pigs: effects of plant species and precipitation methods. Animal, 19(10), Article 101653. https://doi.org/10.1016/j.animal.2025.101653

López-Rodulfo, I. M., Villa-Martínez, E., Rios, A. & Escalante, B. (2023). Caveolin Delivered by Ultrasound-Mediated Microbubble Destruction Prevents Endothelial Cell Proliferation. Cellular and Molecular Bioengineering, 16(3), 219-229. https://doi.org/10.1007/s12195-023-00763-1

Johnsen, N. K., Chaiyasarn, S., Guo, Z., Han, J. & Eser, B. E. (2025). Cobalamin-Dependent Aryl Methyl Ether O-Demethylases: Promising Enzymes for Biocatalytic Applications from Lignin Valorization to Organic Synthesis. ChemCatChem, 17(21), 1-19. Article e00877. https://doi.org/10.1002/cctc.202500877

Ambrose, H. W., Feilberg, A., Schwab, C. & Kofoed, M. V. W. (2025). Impact of chemical and biological additives on microbial community and methane emissions in pig slurry storage. 41. Abstract from 13th International Symposium on Anaerobic Microbiology, Leipzig, Germany.

Jensen, T. B., Anand, M., Batstone, D. & Kofoed, M. V. W. (2025). Here comes the sun: intermittent operation of hydrogen-based in situ biomethanation at pilot-scale. Applied Energy, 401(Part A), Article 126601. https://doi.org/10.1016/j.apenergy.2025.126601

Ambrose, H. W., Bambace, M. F., Marietou, A., Hosek, J., Feilberg, A., Kofoed, M. V. W. & Schwab, C. (2025). Novel Biological Approach to Mitigate Methane Emissions from Livestock Slurry through Microbial Conversion of Glycerol. Environmental Science & Technology, 59(38), 20512-20525. https://doi.org/10.1021/acs.est.4c12999

Wang, H., Jeon, B. S., Ortiz-Ardila, A. E. & Angenent, L. T. (2025). Steering the Chain-Elongating Microbiome to C8 or C6 Production with Ethanol and Lactate as Coelectron Donors. Environmental Science and Technology, 59(32), 16947-16958. https://doi.org/10.1021/acs.est.5c01461

Rasmussen, M. H., Møller, S. L. B., Svenningsen, E. B., Tørring, T. & Poulsen, T. B. (2025). P450 Enzyme LyoI Performs Hydro-2,2'-Bifuran Oxidation in the Polyether Ionophore Lysocellin. Angewandte Chemie International Edition, 64(43), Article e202507847. https://doi.org/10.1002/anie.202507847

Freitas, D., Gwala, S., Henry, G., Lazaridou, A., Boesch, C., Duijsens, D., Wheller, F., Lopez-Rodulfo, I. M., Kotsiou, K., Corbin, K. R., Alongi, M., Martinez, M. M., Hafiz, M. S., Tomassen, M. M. M., Perez-Moral, N., Vidal, N. P., Ariëns, R. M. C., Simsek, S., El, S. N. ... Grassby, T. (2025). Interlaboratory validation of an optimized protocol for measuring α-amylase activity by the INFOGEST international research network. Scientific Reports, 15(1), Article 30985. https://doi.org/10.1038/s41598-025-12561-y

Calegari, R. P., Mendes, K. F., Martins, B. C., Pimpinato, R. F., Baptista, A. S. & Tornisielo, V. L. (2018). Removal of diuron and hexazinone from public water supply using a filter system. Planta Daninha, 36, Article e018183662. https://doi.org/10.1590/S0100-83582018360100147

Silva, A. P. M. D., Sica, P., Pires, L. D. A. N., Spironello, L., Mota, L. A., Peixoto, G. T., Calegari, R. P., Basso, T. O., Tonso, A., Gomes, M. P., Somessari, S. L., Duarte, H. G., Somessari, E. S. R., Carvalho, R. D. S. & Baptista, A. S. (2023). Integration of Corn and Cane for Ethanol Production: Effects of Lactobacilli Contamination on Fermentative Parameters and Use of Ionizing Radiation Treatment for Disinfection. Fermentation , 9(2), Article 89. https://doi.org/10.3390/fermentation9020089

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Revised 20.03.2026

AU Engineering