Palomo, A., Pedersen, A. G., Fowler, J., Dechesne, A., Sicheritz-Pontén, T.
& Smets, B. F. (2018).
Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira.
I S M E Journal,
12(7), 1779-1793.
https://doi.org/10.1038/s41396-018-0083-3
Xu, S., Chai, W., Xiao, R.
, Smets, B. F., Palomo, A. & Lu, H. (2022).
Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source.
Science of the Total Environment,
802, Article 149862.
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Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J.
, Smets, B. F., Bürgmann, H. & Ju, F. (2021).
Pathogenic and Indigenous Denitrifying Bacteria are Transcriptionally Active and Key Multi-Antibiotic-Resistant Players in Wastewater Treatment Plants.
Environmental Science and Technology,
55(5), 10862–10874.
https://doi.org/10.1021/acs.est.1c02483
Wang, S., Ishii, K., Yu, H., Shi, X.
, Smets, B. F., Palomo, A. & Zuo, J. (2021).
Stable nitrogen removal by anammox process after rapid temperature drops: Insights from metagenomics and metaproteomics.
Bioresource Technology,
320, Article 124231.
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Valverde Pérez, B., Xing, W., Zachariae, A. A., Skadborg, M. M., Kjeldgaard, A. F., Palomo, A.
& Smets, B. F. (2020).
Cultivation of methanotrophic bacteria in a novel bubble-free membrane bioreactor for microbial protein production.
Bioresource Technology,
310, Article 123388.
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Palomo, A., Fowler, J., Gülay, A., Rasmussen, S., Sicheritz-Pontén, T.
& Smets, B. F. (2016).
Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.
I S M E Journal,
10, 2569–2581.
https://doi.org/10.1038/ismej.2016.63
Su, Q., Domingo-Felez, C., Zhang, Z., Blum, J.-M., Jensen, M. M.
& Smets, B. F. (2019).
The effect of pH on N2O production in intermittently-fed nitritation reactors.
Water Research,
156, 223-231.
https://doi.org/10.1016/j.watres.2019.03.015
Blansaer, N., Alloul, A., Verstraete, W., Vlaeminck, S. E.
& Smets, B. F. (2022).
Aggregation of purple bacteria in an upflow photobioreactor to facilitate solid/liquid separation: Impact of organic loading rate, hydraulic retention time and water composition.
Bioresource Technology,
348, Article 126806.
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Lee, C. O., Boe-Hansen, R., Musovic, S.
, Smets, B. F., Albrechtsen, H.-J. & Binning, P. J. (2014).
Effects of dynamic operating conditions on nitrification in biological rapid sand filters for drinking water treatment.
Water Research,
64, 226-236.
https://doi.org/10.1016/j.watres.2014.07.001
Parra, B., Lutz, V. T., Brøndsted, L., Carmona, J. L., Palomo, A., Nesme, J., Van Hung Le, V.
, Smets, B. F. & Dechesne, A. (2024).
Characterization and Abundance of Plasmid-Dependent Alphatectivirus Bacteriophages.
Microbial Ecology,
87(1), Article 85.
https://doi.org/10.1007/s00248-024-02401-3
Parra, B., Cockx, B., Lutz, V. T., Brøndsted, L.
, Smets, B. F. & Dechesne, A. (2024).
Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids.
Microbiology Spectrum,
12(1), Article e0253723.
https://doi.org/10.1128/spectrum.02537-23
Li, L., Nesme, J., Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, S. J., Graham, D. W., Romalde, J. L., Dechesne, A.
& Smets, B. F. (2021).
Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage.
Environmental Science and Technology,
55(9), 5939–5949.
https://doi.org/10.1021/acs.est.0c08548
Klümper, U., Dechesne, A., Riber, L., Brandt, K. K., Gülay, A., Sørensen, S. J.
& Smets, B. F. (2017).
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner.
I S M E Journal,
11, 152-165.
https://doi.org/10.1038/ismej.2016.98
Vangsgaard, A. K., Mutlu, A. G., Gernaey, K.
, Smets, B. F. & Sin, G. (2013).
Calibration and validation of a model describing complete autotrophic nitrogen removal in a granular SBR system.
Journal of Chemical Technology and Biotechnology,
88(11), 2007-2015.
https://doi.org/10.1002/jctb.4060
Valverde Pérez, B., Pape, M. L., Kjeldgaard, A. F., Zachariae, A. A., Schneider, C., Hélix-Nielsen, C., Zarebska, A.
& Smets, B. F. (2019).
Dewatering methanotrophic enrichments intended for single cell protein production using biomimetic aquaporin forward osmosis membranes.
Separation and Purification Technology,
235, Article 116133.
https://doi.org/10.1016/j.seppur.2019.116133
Rosenbom, A. E., Binning, P. J., Aamand, J., Dechesne, A.
, Smets, B. F. & Johnsen, A. R. (2014).
Does microbial cm-scale heterogeneity impact pesticide degradation in and leaching from loamy agricultural soils? Science of the Total Environment,
472, 90-98.
https://doi.org/10.1016/j.scitotenv.2013.11.009
Yang, H.-H., Morrow, J. B., Grasso, D., Vinopal, R. T., Dechesne, A.
& Smets, B. F. (2008).
Antecedent growth conditions alter retention of environmental Escherichia coli isolates in transiently wetted porous media.
Environmental Science & Technology,
42(24), 9310-9316.
https://doi.org/10.1021/es801708h
Dechesne, A., Wang, G., Gulez, G., Or, D.
& Smets, B. F. (2010).
Hydration-controlled bacterial motility and dispersal on surfaces.
Proceedings of the National Academy of Sciences of the United States of America,
107(32), 14369-14372.
https://doi.org/10.1073/pnas.1008392107
Papadopoulou, A., Hedegaard, M. J., Dechesne, A., Albrechtsen, H.-J., Musovic, S.
& Smets, B. F. (2019).
Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter.
Applied Microbiology and Biotechnology,
103(2), 1007-1019.
https://doi.org/10.1007/s00253-018-9501-8
Musovic, S., Klümper, U., Dechesne, A., Magid, J.
& Smets, B. F. (2014).
Long- term manure exposure increases soil bacterial community potential for plasmid uptake.
Environmental Microbiology Reports,
6(2), 125-130.
https://doi.org/10.1111/1758-2229.12138
Yu, Z., He, W., Klincke, F., Madsen, J. S., Kot, W., Hansen, L. H., Quintela-Baluja, M., Balboa, S., Dechesne, A.
, Smets, B., Nesme, J. & Sørensen, S. J. (2024).
Insights into the circular: the cryptic plasmidome and its derived antibiotic resistome in the urban water systems.
Environment International,
183, Article 108351.
https://doi.org/10.1016/j.envint.2023.108351
Hedegaard, M. J., Deliniere, H., Prasse, C., Dechesne, A.
, Smets, B. F. & Albrechtsen, H.-J. (2018).
Evidence of co-metabolic bentazone transformation by methanotrophic enrichment from a groundwater-fed rapid sand filter.
Water Research,
129, 105-114.
https://doi.org/10.1016/j.watres.2017.10.073
Tirkey, V., Goonesekera, E. M., Kovalovszki, A.
, Smets, B. F., Dechesne, A. & Valverde-Pérez, B. (2022).
Short sludge age denitrification as alternative process for energy and nutrient recovery.
Bioresource Technology,
366, Article 128184.
https://doi.org/10.1016/j.biortech.2022.128184
Li, L., Dechesne, A., He, Z., Madsen, J. S., Nesme, J., Sørensen, S. J.
& Smets, B. F. (2018).
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community.
Environmental Science & Technology Letters,
5(5), 260-265.
https://doi.org/10.1021/acs.estlett.8b00105
Kinnunen, M., Gülay, A., Albrechtsen, H.-J., Dechesne, A.
& Smets, B. F. (2017).
Nitrotoga is selected over Nitrospira in newly assembled biofilm communities from a tap water source community at increased nitrite loading.
Environmental Microbiology,
19(7), 2785–2793.
https://doi.org/10.1111/1462-2920.13792
Riva, F., Dechesne, A., Eckert, E. M., Riva, V., Borin, S., Mapelli, F.
, Smets, B. F. & Crotti, E. (2024).
Conjugal plasmid transfer in the plant rhizosphere in the One Health context.
Frontiers in Microbiology,
15, Article 1457854.
https://doi.org/10.3389/fmicb.2024.1457854
Yu, Z., Wang, Q., Pinilla-Redondo, R., Madsen, J. S., Clasen, K. A. D., Ananbeh, H., Olesen, A. K., Gong, Z., Yang, N., Dechesne, A.
, Smets, B., Nesme, J. & Sørensen, S. J. (2024).
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater.
Ecotoxicology and Environmental Safety,
271, Article 115971.
https://doi.org/10.1016/j.ecoenv.2024.115971
Dechesne, A., Owsianiak, M., Bazire, A., Grundmann, G. L., Binning, P. J.
& Smets, B. F. (2010).
Biodegradation in a Partially Saturated Sand Matrix: Compounding Effects of Water Content, Bacterial Spatial Distribution, and Motility.
Environmental Science & Technology,
44, 2386-2392.
https://doi.org/10.1021/es902760y
Owsianiak, M., Dechesne, A., Binning, P. J., Chambon, J. C. C., Sørensen, S. R.
& Smets, B. F. (2010).
Evaluation of Bioaugmentation with Entrapped Degrading Cells as a Soil Remediation Technology.
Environmental Science & Technology,
44(19), 7622-7627.
https://doi.org/10.1021/es101160u
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., Graham, D., Daffonchio, D., Fodelianakis, S., Hahn, N., Boon, N.
& Smets, B. F. (2016).
A conceptual framework for invasion in microbial communities.
ISME Journal,
10(12), 2773–2779.
https://doi.org/10.1038/ismej.2016.75
Li, L., Dechesne, A., Madsen, J. S., Nesme, J., Sørensen, S. J.
& Smets, B. F. (2020).
Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes.
ISME Journal,
14, 1170–1181.
https://doi.org/10.1038/s41396-020-0596-4
Serhatlioglu, M., Rezaei, B., Stovicek, A., Pikkupeura, S., Hoestgaard-Jensen, K., Keller, S. S., Dechesne, A.
, Smets, B. F. & Kristensen, A. (2025).
Viscoelastic particle enrichment using a 3D-printed enrichment device.
Sensors and Actuators A: Physical,
395, Article 116992.
https://doi.org/10.1016/j.sna.2025.116992
Wagner, F. B., Diwan, V., Dechesne, A., Fowler, J.
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Copper-induced stimulation of nitrification in biological rapid sand filters for drinking water production by proliferation of Nitrosomonas spp. Environmental Science and Technology,
53(21), 12433-12441.
https://doi.org/10.1021/acs.est.9b03885
Gülez, G., Altintas, A., Fazli, M., Dechesne, A., Workman, C., Tolker-Nielsen, T.
& Smets, B. F. (2014).
Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials.
MicrobiologyOpen,
3(4), 457-469.
https://doi.org/10.1002/mbo3.180
He, Z., Parra, B., Nesme, J.
, Smets, B. F. & Dechesne, A. (2022).
Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages.
Water Research,
227, Article 119320.
https://doi.org/10.1016/j.watres.2022.119320
Li, H., Dechesne, A., He, Z., Jensen, M. M., Song, H. L.
& Smets, B. F. (2023).
Electrochemical disinfection may increase the spread of antibiotic resistance genes by promoting conjugal plasmid transfer.
Science of the Total Environment,
858, Article 159846.
https://doi.org/10.1016/j.scitotenv.2022.159846
Olesen, A. K., Pinilla-Redondo, R., Hansen, M. F., Russel, J., Dechesne, A.
, Smets, B. F., Madsen, J. S., Nesme, J. & Sørensen, S. J. (2022).
IncHI1A plasmids potentially facilitate a horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage.
Molecular Ecology,
31(5), 1595-1608.
https://doi.org/10.1111/mec.16346
Hassoun-Kheir, N., Stabholz, Y., Kreft, J.-U., de la Cruz, R., Dechesne, A.
, Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J. ... Paul, M. (2021).
EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments.
One Health,
13, Article 100339.
https://doi.org/10.1016/j.onehlt.2021.100339