Publications by Environmental Engineering

Are you looking for publications by Section of Environmental Engineering? On this page you can find all the publications made by the Section of Environmental Engineering - Department of Biological & Chemical Engineering, Aarhus University.

Below you can find a list of all the publications, their publishing date, their author(s), and titles. The list can be sorted by date, author, and title:

List of Publications

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Li, L., Li, B., Yin, X., Xia, Y., Yang, Y., Xu, X., Lam, T. T. Y., Leung, K. M. Y., Xu, F., Zhang, X., Guo, J., Schmitt, H., Wright, G. D., Midega, J., Bezuidenhout, C., Picão, R. C., Ahammad, S. Z., Smalla, K., Djordjevic, S. P. ... Zhang, T. (2025). Assessing antimicrobial resistance connectivity across One Health sectors. Nature Water, 3(10), 1100-1113. https://doi.org/10.1038/s44221-025-00514-8

Attard, E., Poly, F., Commeaux, C., Laurent, F., Terada, A., Smets, B. F., Recous, S. & Le Roux, X. (2010). Shifts between Nitrospira- and Nitrobacter-like nitrite oxidizers underlie the response of soil potential nitrite oxidation to changes in tillage practices. Environmental Microbiology, 12(2), 315-326. https://doi.org/10.1111/j.1462-2920.2009.02070.x

Kinnunen, M., Dechesne, A., Albrechtsen, H.-J. & Smets, B. F. (2018). Stochastic processes govern invasion success in microbial communities when the invader is phylogenetically close to resident bacteria. I S M E Journal, 12, 2748–2756. https://doi.org/10.1038/s41396-018-0202-1

Terada, A., Lackner, S., Tsuneda, S. & Smets, B. F. (2007). Redox-stratification controlled biofilm (ReSCoBi) for completely autotrophic nitrogen removal: The effect of co-versus-diffusion on reactor performance. Biotechnology and Bioengineering, 97(1), 40-51. https://doi.org/10.1002/bit.21213

Or, D., Smets, B. F., Wraith, J. M., Dechesne, A. & Friedman, S. P. (2007). Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review. Advances in Water Resources, 30, 1505-1527. https://doi.org/10.1016/j.advwatres.2006.05.025

Yu, R., Smets, B. F., Gan, P., MacKay, A. A. & Graf, J. (2014). Seasonal and spatial variations in microbial activity at various phylogenetic resolutions at a groundwater – surface water interface. Canadian Journal of Microbiology, 60(5), 277-286. https://doi.org/10.1139/cjm-2014-0048

Niederdorfer, R., Hausherr, D., Palomo, A., Wei, J., Magyar, P., Smets, B. F., Joss, A. & Bürgmann, H. (2021). Temperature modulates stress response in mainstream anammox reactors. Communications Biology, 4(1), Artikel 23. https://doi.org/10.1038/s42003-020-01534-8

Torresi, E., Tang, K., Deng, J., Sund, C., Smets, B. F., Christensson, M. & Andersen, H. R. (2019). Removal of micropollutants during biological phosphorus removal: Impact of redox conditions in MBBR. Science of the Total Environment, 663, 496-506. https://doi.org/10.1016/j.scitotenv.2019.01.283

Mortensen, A. T., Goonesekera, E. M., Dechesne, A., Elad, T., Tang, K., Andersen, H. R., Smets, B. F. & Valverde-Pérez, B. (2023). Methanotrophic oxidation of organic micropollutants and nitrogen upcycling in a hybrid membrane biofilm reactor (hMbFR) for simultaneous O₂ and CH₄ supply. Water Research, 242, Artikel 120104. https://doi.org/10.1016/j.watres.2023.120104

Pellicer i Nàcher, C., Franck, S., Gülay, A., Ruscalleda, M., Terada, A., Abu Al-Soud, W., Asser Hansen, M., Sørensen, S. J. & Smets, B. F. (2014). Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics. Microbial Biotechnology, 7(1), 32-43. https://doi.org/10.1111/1751-7915.12079

Spérandio, M., Lang, L., Sabba, F., Nerenberg, R., Vanrolleghem, P., Domingo-Félez, C., Smets, B. F., Duan, H., Ni, B. J. & Yuan, Z. (2022). Modelling N₂O production and emissions. I L. Ye, J. Porro & I. Nopens (red.), Quantification and Modelling of Fugitive Greenhouse Gas Emissions from Urban Water Systems (s. 167-196). IWA Publishing. https://doi.org/10.2166/9781789060461_0167

Sabba, F., Terada, A., Wells, G., Smets, B. F. & Nerenberg, R. (2018). Nitrous oxide emissions from biofilm processes for wastewater treatment. Applied Microbiology and Biotechnology, 102(22), 9815–9829. https://doi.org/10.1007/s00253-018-9332-7

Sydow, M., Owsianiak, M., Szczepaniak, Z., Framski, G., Smets, B. F., Ławniczak, Ł., Lisiecki, P., Szulc, A., Cyplik, P. & Chrzanowski, Ł. (2016). Evaluating robustness of a diesel-degrading bacterial consortium isolated from contaminated soil. New Biotechnology, 33(6), 852-859. https://doi.org/10.1016/j.nbt.2016.08.003

Agrawal, S., Weissbrodt, D. G., Annavajhala, M., Jensen, M. M., Arroyo, J. M. C., Wells, G., Chandran, K., Vlaeminck, S. E., Terada, A., Smets, B. F. & Lackner, S. (2021). Time to act-assessing variations in qPCR analyses in biological nitrogen removal with examples from partial nitritation/anammox systems. Water Research, 190, Artikel 116604. https://doi.org/10.1016/j.watres.2020.116604

Ye, J., Gao, H., Domingo-Félez, C., Wu, J., Zhan, M., Yu, R. & Smets, B. F. (2021). Insights into chronic zinc oxide nanoparticle stress responses of biological nitrogen removal system with nitrous oxide emission and its recovery potential. Bioresource Technology, 327, Artikel 124797. https://doi.org/10.1016/j.biortech.2021.124797

Ye, J., Gao, H., Domingo-Félez, C., Wu, J., Zhan, M., Yu, R. & Smets, B. F. (2022). Chronic effects of cerium dioxide nanoparticles on biological nitrogen removal and nitrous oxide emission: Insight into impact mechanism and performance recovery potential. Bioresource Technology, 351, Artikel 126966. https://doi.org/10.1016/j.biortech.2022.126966

Valverde Perez, B., Ramin, E., Smets, B. F. & Plósz, B. G. (2015). EBP2R – An innovative enhanced biological nutrient recovery activated sludge system to produce growth medium for green microalgae cultivation. Water Research, 68(1), 821-830. https://doi.org/10.1016/j.watres.2014.09.027

Xu, J.-X., Li, X.-M., Sun, G.-X., Cui, L., Ding, L.-J., He, C., Li, L.-G., Shi, Q., Smets, B. F. & Zhu, Y.-G. (2019). Fate of Labile Organic Carbon in Paddy Soil Is Regulated by Microbial Ferric Iron Reduction. Environmental Science and Technology, 53(15), 8633-8542. https://doi.org/10.1021/acs.est.9b01323

Lv, C., Ming, L., Zhong, S., Wang, J., Lei, W., Mutlu, A. G. & Smets, B. F. (2018). Corrigendum to “Decay Experiments of Effective N-Removing Microbial Communities in Sequencing Batch Reactors”. Journal of Chemistry, 2018. https://doi.org/10.1155/2018/8949574

Gilmore, K. R., Terada, A., Smets, B. F., Love, N. G. & Garland, J. L. (2013). Autotrophic Nitrogen Removal in a Membrane-Aerated Biofilm Reactor Under Continuous Aeration: A Demonstration. Environmental Engineering Science, 30(1), 38-45. https://doi.org/10.1089/ees.2012.0222

Yin, X., Chen, X., Jiang, X.-T., Yang, Y., Li, B., Shum, M. H.-H., Lam, T. T. Y., Leung, G. M., Rose, J., Sanchez-Cid, C., Vogel, T. M., Walsh, F., Berendonk, T. U., Midega, J., Uchea, C., Frigon, D., Wright, G. D., Bezuidenhout, C., Picão, R. C. ... Zhang, T. (2023). Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples. Environmental Science and Technology, 57(26), 9713-9721. https://doi.org/10.1021/acs.est.3c00159

Palomo, A., Dechesne, A., Pedersen, A. G. & Smets, B. F. (2022). Genomic profiling of Nitrospira species reveals ecological success of comammox Nitrospira. Microbiome, 10(1), Artikel 204. https://doi.org/10.1186/s40168-022-01411-y

Dechesne, A., Musovic, S., Palomo, A., Diwan, V. & Smets, B. F. (2016). Underestimation of ammonia-oxidizing bacteria abundance by amplification bias in amoA-targeted qPCR. Microbial Biotechnology, 9(4), 519-524. https://doi.org/10.1111/1751-7915.12366

Palomo, A., Dechesne, A., Cordero, O. X. & Smets, B. F. (2022). Evolutionary Ecology of Natural Comammox Nitrospira Populations. mSystems, 7(1), Artikel e01139-21. https://doi.org/10.1128/msystems.01139-21

Tian, Z., Palomo, A., Zhang, H., Luan, X., Liu, R., Awad, M., Smets, B. F., Zhang, Y. & Yang, M. (2020). Minimum influent concentrations of oxytetracycline, streptomycin and spiramycin in selecting antibiotic resistance in biofilm type wastewater treatment systems. Science of the Total Environment, 720, Artikel 137531. https://doi.org/10.1016/j.scitotenv.2020.137531

Fowler, S. J., Palomo, A., Dechesne, A., Mines, P. D. & Smets, B. F. (2018). Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities. Environmental Microbiology, 20(3), 1002-1015. https://doi.org/10.1111/1462-2920.14033

Palomo, A., Azevedo, D., Touceda-Suárez, M., Domingo-Félez, C., Mutlu, A. G., Dechesne, A., Wang, Y., Zhang, T. & Smets, B. F. (2022). Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle. Environmental Microbiomes, 17(1), Artikel 39. https://doi.org/10.1186/s40793-022-00432-2

Palomo, A., Pedersen, A. G., Fowler, J., Dechesne, A., Sicheritz-Pontén, T. & Smets, B. F. (2018). Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira. I S M E Journal, 12(7), 1779-1793. https://doi.org/10.1038/s41396-018-0083-3

Xu, S., Chai, W., Xiao, R., Smets, B. F., Palomo, A. & Lu, H. (2022). Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source. Science of the Total Environment, 802, Artikel 149862. https://doi.org/10.1016/j.scitotenv.2021.149862

Yuan, L., Wang, Y., Zhang, L., Palomo, A., Zhou, J., Smets, B. F., Bürgmann, H. & Ju, F. (2021). Pathogenic and Indigenous Denitrifying Bacteria are Transcriptionally Active and Key Multi-Antibiotic-Resistant Players in Wastewater Treatment Plants. Environmental Science and Technology, 55(5), 10862–10874. https://doi.org/10.1021/acs.est.1c02483

Wang, S., Ishii, K., Yu, H., Shi, X., Smets, B. F., Palomo, A. & Zuo, J. (2021). Stable nitrogen removal by anammox process after rapid temperature drops: Insights from metagenomics and metaproteomics. Bioresource Technology, 320, Artikel 124231. https://doi.org/10.1016/j.biortech.2020.124231

Valverde Pérez, B., Xing, W., Zachariae, A. A., Skadborg, M. M., Kjeldgaard, A. F., Palomo, A. & Smets, B. F. (2020). Cultivation of methanotrophic bacteria in a novel bubble-free membrane bioreactor for microbial protein production. Bioresource Technology, 310, Artikel 123388. https://doi.org/10.1016/j.biortech.2020.123388

Palomo, A., Fowler, J., Gülay, A., Rasmussen, S., Sicheritz-Pontén, T. & Smets, B. F. (2016). Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp. I S M E Journal, 10, 2569–2581. https://doi.org/10.1038/ismej.2016.63

Su, Q., Domingo-Felez, C., Zhang, Z., Blum, J.-M., Jensen, M. M. & Smets, B. F. (2019). The effect of pH on N₂O production in intermittently-fed nitritation reactors. Water Research, 156, 223-231. https://doi.org/10.1016/j.watres.2019.03.015

Blansaer, N., Alloul, A., Verstraete, W., Vlaeminck, S. E. & Smets, B. F. (2022). Aggregation of purple bacteria in an upflow photobioreactor to facilitate solid/liquid separation: Impact of organic loading rate, hydraulic retention time and water composition. Bioresource Technology, 348, Artikel 126806. https://doi.org/10.1016/j.biortech.2022.126806

Pellicer i Nàcher, C. & Smets, B. F. (2014). Structure, composition, and strength of nitrifying membrane-aerated biofilms. Water Research, 57, 151-161. https://doi.org/10.1016/j.watres.2014.03.026

Lee, C. O., Boe-Hansen, R., Musovic, S., Smets, B. F., Albrechtsen, H.-J. & Binning, P. J. (2014). Effects of dynamic operating conditions on nitrification in biological rapid sand filters for drinking water treatment. Water Research, 64, 226-236. https://doi.org/10.1016/j.watres.2014.07.001

Parra, B., Lutz, V. T., Brøndsted, L., Carmona, J. L., Palomo, A., Nesme, J., Van Hung Le, V., Smets, B. F. & Dechesne, A. (2024). Characterization and Abundance of Plasmid-Dependent Alphatectivirus Bacteriophages. Microbial Ecology, 87, Artikel 85. https://doi.org/10.1007/s00248-024-02401-3

Parra, B., Cockx, B., Lutz, V. T., Brøndsted, L., Smets, B. F. & Dechesne, A. (2024). Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids. Microbiology Spectrum, 12(1), Artikel e0253723. https://doi.org/10.1128/spectrum.02537-23

Li, L., Nesme, J., Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, S. J., Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F. (2021). Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage. Environmental Science and Technology, 55(9), 5939–5949. https://doi.org/10.1021/acs.est.0c08548

Tsitonaki, A., Smets, B. F. & Bjerg, P. L. (2008). Effects of heat-activated persulfate oxidation on soil microorganisms. Water Research, 42(4-5), 1013-1022. https://doi.org/10.1016/j.watres.2007.09.018

Klümper, U., Dechesne, A., Riber, L., Brandt, K. K., Gülay, A., Sørensen, S. J. & Smets, B. F. (2017). Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner. I S M E Journal, 11, 152-165. https://doi.org/10.1038/ismej.2016.98

Vangsgaard, A. K., Mutlu, A. G., Gernaey, K., Smets, B. F. & Sin, G. (2013). Calibration and validation of a model describing complete autotrophic nitrogen removal in a granular SBR system. Journal of Chemical Technology and Biotechnology, 88(11), 2007-2015. https://doi.org/10.1002/jctb.4060

Ma, Y., Domingo Felez, C., Plósz, B. G. & Smets, B. F. (2017). Intermittent Aeration Suppresses Nitrite-Oxidizing Bacteria in Membrane-Aerated Biofilms: A Model-Based Explanation. Environmental Science and Technology, 51(11), 6146-6155. https://doi.org/10.1021/acs.est.7b00463

Valverde Pérez, B., Pape, M. L., Kjeldgaard, A. F., Zachariae, A. A., Schneider, C., Hélix-Nielsen, C., Zarebska, A. & Smets, B. F. (2019). Dewatering methanotrophic enrichments intended for single cell protein production using biomimetic aquaporin forward osmosis membranes. Separation and Purification Technology, 235, Artikel 116133. https://doi.org/10.1016/j.seppur.2019.116133

Rosenbom, A. E., Binning, P. J., Aamand, J., Dechesne, A., Smets, B. F. & Johnsen, A. R. (2014). Does microbial cm-scale heterogeneity impact pesticide degradation in and leaching from loamy agricultural soils? Science of the Total Environment, 472, 90-98. https://doi.org/10.1016/j.scitotenv.2013.11.009

Yang, H.-H., Morrow, J. B., Grasso, D., Vinopal, R. T., Dechesne, A. & Smets, B. F. (2008). Antecedent growth conditions alter retention of environmental Escherichia coli isolates in transiently wetted porous media. Environmental Science & Technology, 42(24), 9310-9316. https://doi.org/10.1021/es801708h

Dechesne, A., Wang, G., Gulez, G., Or, D. & Smets, B. F. (2010). Hydration-controlled bacterial motility and dispersal on surfaces. Proceedings of the National Academy of Sciences of the United States of America, 107(32), 14369-14372. https://doi.org/10.1073/pnas.1008392107

Papadopoulou, A., Hedegaard, M. J., Dechesne, A., Albrechtsen, H.-J., Musovic, S. & Smets, B. F. (2019). Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter. Applied Microbiology and Biotechnology, 103(2), 1007-1019. https://doi.org/10.1007/s00253-018-9501-8

Dechesne, A., Or, D. & Smets, B. F. (2005). Substrate diffusion heterogeneity controls bacterial competition and coixistence. EOS Transactions AGU - Fall Meeting, 86(52), Abstract B31A-0967.

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Revideret 16.01.2025

AU Engineering