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Vitreoscilla hemoglobin expression in engineered Escherichia coli: Improved performance in high cell-density batch cultivations.
Biotechnology Journal,
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Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: An alternative to fed-batch cultures.
Biotechnology and Bioengineering,
99(4), 893-901.
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Lara, A. R., Kunert, F., Vandenbroucke, V., Taymaz-Nikerel, H., Martínez, L. M., Sigala, J. C., Delvigne, F., Gosset, G. & Büchs, J. (2024).
Transport-controlled growth decoupling for self-induced protein expression with a glycerol-repressible genetic circuit.
Biotechnology and Bioengineering,
121(6), 1789-1802.
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Lara, A. R., Leal, L., Flores, N., Gosset, G., Bolívar, F. & Ramírez, O. T. (2006).
Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-down system.
Biotechnology and Bioengineering,
93(2), 372-385.
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Pablos, T. E., Olivares, R., Sigala, J. C., Ramírez, O. T.
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Toward efficient microaerobic processes using engineered Escherichia coli W3110 strains.
Engineering in Life Sciences,
16(7), 588-597.
https://doi.org/10.1002/elsc.201500129
Pohlen, L., García, E., Martínez, L. M., Flores, N., Büchs, J., Gosset, G.
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Sigma Factors as Potential Targets to Enhance Recombinant Protein Expression.
Biotechnology and Bioengineering,
122(6), 1598-1607.
https://doi.org/10.1002/bit.28958
De Anda, R.
, Lara, A. R., Hernández, V., Hernández-Montalvo, V., Gosset, G., Bolívar, F. & Ramírez, O. T. (2006).
Replacement of the glucose phosphotransferase transport system by galactose permease reduces acetate accumulation and improves process performance of Escherichia coli for recombinant protein production without impairment of growth rate.
Metabolic Engineering,
8(3), 281-290.
https://doi.org/10.1016/j.ymben.2006.01.002
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Recombinant protein expression in proteome-reduced cells under aerobic and oxygen-limited regimes.
Biotechnology and Bioengineering,
121(4), 1216-1230.
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Plasmid DNA production in proteome-reduced Escherichia coli.
Microorganisms,
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Lara, A. R., Galindo, J., Jaén, K. E., Juárez, M. & Sigala, J. C. (2020).
Physiological response of escherichia coli W3110 and BL21 to the aerobic expression of vitreoscilla hemoglobin.
Journal of Microbiology and Biotechnology,
30(10), 1592-1596.
https://doi.org/10.4014/JMB.2004.04030
Cortés, J. T., Flores, N., Bolívar, F.
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Physiological effects of pH gradients on Escherichia coli during plasmid DNA production.
Biotechnology and Bioengineering,
113(3), 598-611.
https://doi.org/10.1002/bit.25817
Sigala, J. C., Quiroz, L., Arteaga, E., Olivares, R.
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Physiological and transcriptional comparison of acetate catabolism between Acinetobacter schindleri ACE and Escherichia coli JM101.
FEMS Microbiology Letters,
366(12), Article fnz151.
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Fuentes, L. G.
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Modification of glucose import capacity in Escherichia coli: Physiologic consequences and utility for improving DNA vaccine production.
Microbial Cell Factories,
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Krausch, N., Kaspersetz, L., Gaytán-Castro, R. D., Schermeyer, M. T.
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Model-Based Characterization of E. coli Strains with Impaired Glucose Uptake.
Bioengineering,
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Baert, J., Delepierre, A., Telek, S., Fickers, P., Toye, D., Delamotte, A.
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Microbial population heterogeneity versus bioreactor heterogeneity: Evaluation of Redox Sensor Green as an exogenous metabolic biosensor.
Engineering in Life Sciences,
16(7), 643-651.
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Delvigne, F., Zune, Q.
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Metabolic variability in bioprocessing: Implications of microbial phenotypic heterogeneity.
Trends in Biotechnology,
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Martínez, J. A., Rodriguez, A., Moreno, F., Flores, N.
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Metabolic modeling and response surface analysis of an Escherichia coli strain engineered for shikimic acid production.
BMC Systems Biology,
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Metabolic engineering of Escherichia coli for L-tyrosine production by expression of genes coding for the chorismate mutase domain of the native chorismate mutase-prephenate dehydratase and a cyclohexadienyl dehydrogenase from Zymomonas mobilis.
Applied and Environmental Microbiology,
74(10), 3284-3290.
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Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered E. coli.
Microorganisms,
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Licona-Cassani, C.
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Inactivation of pyruvate kinase or the phosphoenolpyruvate: Sugar phosphotransferase system increases shikimic and dehydroshikimic acid yields from glucose in bacillus subtilis.
Journal of Molecular Microbiology and Biotechnology,
24(1), 37-45.
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Grijalva-Hernández, F., Vega-Estrada, J., Escobar-Rosales, M., Ortega-López, J., Aguilar-López, R.
, Lara, A. R. & Montes-Horcasitas, M. D. C. (2019).
High kanamycin concentration as another stress factor additional to temperature to increase pdna production in e. Coli dh5α batch and fed-batch cultures.
Microorganisms,
7(12), Article 711.
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Knabben, I., Regestein, L., Marquering, F., Steinbusch, S.
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High cell-density processes in batch mode of a genetically engineered Escherichia coli strain with minimized overflow metabolism using a pressurized bioreactor.
Journal of Biotechnology,
150(1), 73-79.
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High cell-density cultivation in batch mode for plasmid DNA production by a metabolically engineered E. coli strain with minimized overflow metabolism.
Biochemical Engineering Journal,
56(3), 165-171.
https://doi.org/10.1016/j.bej.2011.06.003
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Heterogeneous oxygen availability affects the titer and topology but not the fidelity of plasmid DNA produced by Escherichia coli.
BMC Biotechnology,
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Glucose transport engineering allows mimicking fed-batch performance in batch mode and selection of superior producer strains.
Microbial Cell Factories,
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Glucose consumption rate-dependent transcriptome profiling of Escherichia coli provides insight on performance as microbial factories.
Microbial Cell Factories,
21(1), Article 189.
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Sigala, J. C., Suárez, B. P.
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Genomic and physiological characterization of a laboratory-isolated Acinetobacter schindleri ACE strain that quickly and efficiently catabolizes acetate.
Microbiology (United Kingdom),
163(7), 1052-1064.
https://doi.org/10.1099/mic.0.000488
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Furfural biotransformation in Acinetobacter baylyi ADP1 and Acinetobacter schindleri ACE.
Biotechnology Letters ,
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https://doi.org/10.1007/s10529-021-03094-1
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Fast dynamic response of the fermentative metabolism of Escherichia coli to aerobic and anaerobic glucose pulses.
Biotechnology and Bioengineering,
104(6), 1153-1161.
https://doi.org/10.1002/bit.22503
Lara, A. R., Jaén, K. E., Sigala, J. C., Regestein, L. & Büchs, J. (2017).
Evaluation of microbial globin promoters for oxygen-limited processes using Escherichia coli.
Journal of Biological Engineering,
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Caspeta, L.
, Lara, A. R., Pérez, N. O., Flores, N., Bolívar, F. & Ramírez, O. T. (2013).
Enhancing thermo-induced recombinant protein production in Escherichia coli by temperature oscillations and post-induction nutrient feeding strategies.
Journal of Biotechnology,
167(1), 47-55.
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Pablos, T. E., Soto, R., Mora, E. M., Le Borgne, S., Ramírez, O. T., Gosset, G.
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Enhanced production of plasmid DNA by engineered Escherichia coli strains.
Journal of Biotechnology,
158(4), 211-214.
https://doi.org/10.1016/j.jbiotec.2011.04.015
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& Lara, A. R. (2012).
Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode.
Microbial Cell Factories,
11, Article 132.
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Lara, A. R., Vazquez-Limón, C., Gosset, G., Bolívar, F., López-Munguía, A. & Ramírez, O. T. (2006).
Engineering Escherichia coli to improve culture performance and reduce formation of by-products during recombinant protein production under transient intermittent anaerobic conditions.
Biotechnology and Bioengineering,
94(6), 1164-1175.
https://doi.org/10.1002/bit.20954
Jaén, K. E., Velazquez, D., Delvigne, F., Sigala, J. C.
& Lara, A. R. (2019).
Engineering E. coli for improved microaerobic pDNA production.
Bioprocess and Biosystems Engineering,
42(9), 1457-1466.
https://doi.org/10.1007/s00449-019-02142-5
Lara, A. R., Jaén, K. E., Folarin, O., Keshavarz-Moore, E. & Büchs, J. (2019).
Effect of the oxygen transfer rate on oxygen-limited production of plasmid DNA by Escherichia coli.
Biochemical Engineering Journal,
150, Article 107303.
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Wunderlich, M., Taymaz-Nikerel, H., Gosset, G., Ramírez, O. T.
& Lara, A. R. (2014).
Effect of growth rate on plasmid DNA production and metabolic performance ofengineered Escherichia coli strains.
Journal of Bioscience and Bioengineering,
117(3), 336-342.
https://doi.org/10.1016/j.jbiosc.2013.08.007